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HAOTONG SUN HEYING WANG XIN LI YANJIE HAO JUN LING HUAN WANG FEIMIAO WANG FANG XU 《Biocell》2023,47(3):607-618
Background: Colon adenocarcinoma (COAD) is the second leading cause of cancer death worldwide thus,
identification of COAD biomarkers is critical. Mitotic Arrest Deficient 2 Like 2 (MAD2L2) is a key factor in
mammalian DNA damage repair and is highly expressed in many malignant tumors. This is a comprehensive study
of MAD2L2 expression, its diagnostic value, prognostic analysis, potential biological function, and impact on the
immune system of patients with COAD. Methods: Gene expression, clinical relevance, prognostic analysis, diagnostic
value, GO/KEGG cluster analysis, data obtained from TCGA, and bioinformatics statistical analysis were performed
using the R package. Immune responses to MAD2L2 expression in COAD were analyzed using TIMER. The
expression of MAD2L2 in HCT116 cells induced by the inflammatory factor TNF-α was detected using Western blot.
Results: Our results underscore the clinical diagnostic value and potential biological significance of MAD2L2 in
patients with COAD. A high level of MAD2L2 expression has been found in COAD and correlated with tumor status
and colon polyps. ROC curve analysis showed that MAD2L2 expression has high diagnostic value in COAD. Analysis
of immune infiltration results showed that MAD2L2 expression was positively correlated with neutrophil levels. The
western blot results demonstrated that MAD2L2 was dose-dependently present with TNF-α. GO/KEGG revealed that
MAD2L2 overexpressed and coexpressed genes were mostly involved in biological functions, including hypoxia
response, response to reduced oxygen levels, mitochondrial translation elongation, and other processes. Conclusion:
MAD2L2 as a new COAD biomarker contributes to our understanding of how alterations in gene expression and the
immunological environment contribute to the development of colon cancer. Following further investigation, MAD2L2
may prove to be a viable target factor for clinical diagnosis and therapy of COAD. 相似文献
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The term “undruggable” is to describe molecules that are not targetable or at least hard to target pharmacologically. Unfortunately, some targets with potent oncogenic activity fall into this category, and currently little is known about how to solve this problem, which largely hampered drug research on human cancers. Ras, as one of the most common oncogenes, was previously considered “undruggable”, but in recent years, a few small molecules like Sotorasib (AMG-510) have emerged and proved their targeted anti-cancer effects. Further, myc, as one of the most studied oncogenes, and tp53, being the most common tumor suppressor genes, are both considered “undruggable”. Many attempts have been made to target these “undruggable” targets, but little progress has been made yet. This article summarizes the current progress of direct and indirect targeting approaches for ras, myc, two oncogenes, and tp53, a tumor suppressor gene. These are potential therapeutic targets but are considered “undruggable”. We conclude with some emerging research approaches like proteolysis targeting chimeras (PROTACs), cancer vaccines, and artificial intelligence (AI)-based drug discovery, which might provide new cues for cancer intervention. Therefore, this review sets out to clarify the current status of targeted anti-cancer drug research, and the insights gained from this review may be of assistance to learn from experience and find new ideas in developing new chemicals that directly target such “undruggable” molecules. 相似文献
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Somatic embryogenesis is an asexual reproduction process that occurs in many plant species, including rice.
This process contains several totipotency markers such as Somatic Embryogenesis Receptor-like Kinase (SERK), Leafy
Cotyledon1 (LEC1) and WUSCHEL-Related Homeobox4 (WOX4) and also a helpful model for embryo development
and clones and transformations. Here, we report the gene expression during somatic embryo development correlates
with regeneration frequency in 14 Javanica rice (pigmented and non-pigmented) using modifified N6 media
supplemented with Kinetin (2.0 mg/L) and NAA (1.0 mg/L). Although there have been advances in understanding
the genetic basis of somatic embryogenesis in other varieties, rice is still unexplored, especially during somatic embryo
development. Moreover, for the formation of callus induction from immature embryos, 2,4-D (2.0 mg/L, 3.0 mg/L)
was used. This study analysed the gene expression of OsSERK, OsWOX4 and OsLEC1 genes through RT-PCR analysis.
Higher expression of the OsLEC1 gene indicates that their function may correlate in the in vitro with the high
response of rice after transfer to regeneration media. This study found that rice varieties of pigmented rice (MS
Pendek and Gogoniti II) and non-pigmented rice (Pandan Ungu) showed high regeneration frequency, showing
higher OsLEC1 expression than other varieties because OsLEC1 promotes the maturation of somatic embryos in plant
regeneration on day 14. However, the contrast with Genjah nganjuk may be effective because of other regulatory
genes. RT-PCR analysis showed OsSERK had less expression level than OsLEC1 and OsWOX4 in the varieties, which
correlate with the percentage of plant regeneration, but not for Gogoniti II. In conclusion, the higher percentage of
plant regeneration correlates with the higher expression level of OsLEC1 at day 14 of media regeneration of rice. 相似文献
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LEI WANG QIUXIA DU YISU SHI MICHAEL ACKAH PENG GUO DANYAN ZHENG MENGMENG WU XIN JIN PEILAN LI QIAONAN ZHANG RUIXUE LI ZHI YIN MENGDI ZHAO WEIGUO ZHAO 《Biocell》2022,46(10):2327-2342
HMA2 (heavy metal ATPase 2) plays a crucial role in extracellular and intracellular Zn2+ transport across biomembranes, maintaining ion homeostasis, and playing an important role in the normal physiological metabolism, growth, and development of plants. In our study, a novel HMA2 gene, named MaHMA2, was isolated and cloned from white mulberry (Morus alba L.). The gene sequence obtained was 1,342 bp long, with an open reading frame of 1,194 bp, encoding a protein of 397 amino acids, with a predicted molecular mass of 42.852 kD and an isoelectric point of 7.53. This protein belonged to the PIB-type ATPase transport protein family. We analyzed the expression of the MaHMA2 gene by quantitative real-time PCR. The results showed that the level of MaHMA2 gene expression decreased to a Zn concentration of 800 mg/kg. Malondialdehyde and proline levels increased and responded to increasing Zn when the MaHMA2 gene was silenced, whereas the activities of peroxidase and superoxide dismutase tended to increase in response to increasing Zn2+ ion stress concentrations but were lower in the gene-silenced plants. These findings suggested that the MaHMA2 gene played an active role in the tolerance response of mulberry to Zn stress. 相似文献
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YANG CAO YINING LIU YANG YU XIAOFEI GUO XIUXIU WANG WENYA MA HANJING LI ZHONGYU REN XINLU GAO SIJIA LI HAOYU JI HONGYANG CHEN HONG YAN YANAN TIAN XIN WANG BENZHI CAI 《Biocell》2023,47(6):1407-1416
Background: Cardiomyocytes derived from human embryonic stem cells (hESCs) are regulated by complex and stringent gene networks during differentiation. Long non-coding RNAs (lncRNAs) exert critical epigenetic regulatory functions in multiple differentiation processes. However, the involvement of lncRNAs in the differentiation of hESCs into cardiomyocytes has not yet been fully elucidated. Here, we identified the key roles of ZFAS1 (lncRNA zinc finger antisense 1) in the differentiation of cardiomyocytes from hESCs. Methods: A model of cardiomyocyte differentiation from stem cells was established using the monolayer differentiation method, and the number of beating hESCs-derived cardiomyocytes was calculated. Gene expression was analyzed by quantitative real-time PCR (qRT-PCR). Immunofluorescence assays were performed to assess the expression of cardiac troponin T (cTnT) and α-actinin protein in cardiomyocytes. Results: qRT-PCR showed that ZFAS1 expression in the mesoderm was significantly higher than that in embryonic stem cells, cardiac progenitor cells, and cardiomyocytes. Knockdown of ZFAS1 inhibited cardiomyocyte differentiation from hESCs, which was characterized by reduced expression of the cardiac-specific markers cTnT, α-actinin, myosin heavy chain 6 (MYH6), and myosin heavy chain 7 (MYH7). In contrast, ZFAS1 overexpression remarkably increased the percentage of spontaneously beating cardiomyocytes. In terms of the mechanism, we found that ZFAS1 is an antisense lncRNA at the 5′ end of the protein-coding gene ZNFX1. Knockdown of ZFAS1 could increase the mRNA expression level of ZNFX1. Furthermore, qRT-PCR demonstrated that the silencing of ZNFX1 led to an increase in cardiac-specific markers that predicted the promotion of cardiomyocyte differentiation. Conclusion: Altogether, these data suggest that lncRNA-ZFAS1 is required for cardiac differentiation by functionally inhibiting the expression of ZNFX1, which may provide a reference for the treatment of heart disease to a certain extent. 相似文献
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Plant U-box (PUB) E3 ubiquitin ligases play important roles in hormone signaling pathways and in response to different abiotic stresses, but little is known about U-box genes in Danshen (root of Salvia miltiorrhiza Bunge). Here, we identified and characterized 70 SmPUB genes based on its genome sequence. Phylogenetic analysis of U-box genes from S. miltiorrhiza and Arabidopsis suggested that they can be clustered into seven subgroups (I–VII). Typical U-box domains were found in all identified SmPUB genes through the analysis of conserved motifs. Moreover, qRT-PCR was applied to analyze the relative expression levels of U-box genes in S. miltiorrhiza roots and leaves under PEG-induced water deficit and salt stresses. Results revealed that the SmPUB genes exhibited stronger response to drought than to salt stress. To the best of our knowledge, this report is the first to perform genome-wide identification and analysis of the U-box gene family in S. miltiorrhiza, and the results provide valuable information for better understanding of the function of U-box in S. miltiorrhiza. 相似文献
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Background: Serratia ureilytica DW2 is a highly efficient phosphate-solubilizing bacteria isolated from
Codonopsis pilosula rhizosphere soil that can promote the growth of C. pilosula; nonetheless, until now, no validated
reference genes from the genus Serratia have been reported that can be used for the normalization of quantitative
real-time polymerase chain reaction (RT–qPCR) data. Methods: To screen stable reference genes of S. ureilytica
DW2, the expression of its eight candidate reference genes (16S rRNA, ftsZ, ftsA, mreB, recA, slyD, thiC, and zipA)
under different treatment conditions (pH, temperature, culture time, and salt content) was assayed by RT–qPCR. The
expression stability of these genes was analyzed using different algorithms (geNorm, NormFinder, and BestKeeper).
To verify the reliability of the data, the expression of the glucose dehydrogenase (gdh) gene under different soluble
phosphate levels was quantified using the most stably expressed reference gene. Results: The results showed that the
zipA and 16S rRNA genes were the most stable reference genes, and the least stable genes were thiC and recA. The
expression of gdh was consistent with the phosphate solubilization ability on plates containing the National Botanical
Research Institute phosphate growth medium. Conclusion: Therefore, this study provides a stable and reliable
reference gene of Serratia for the accurate quantification of functional gene expression in future studies. 相似文献
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NINGYU LI XIAOFANG CHEN SUXIA GENG PEILONG LAI LISI HUANG MINMING LI XIN HUANG CHENGXIN DENG YULIAN WANG JIANYU WENG XIN DU 《Biocell》2023,47(1):133-141
The pathogenesis of myelodysplastic syndrome (MDS) may be related to the abnormal expression of microRNAs
(miRNAs), which could influence the differentiation capacity of mesenchymal stem cells (MSCs) towards adipogenic and
osteogenic lineages. In this study, exosomes from bone marrow plasma were successfully extracted and identified.
Assessment of miR-103-3p expression in exosomes isolated from BM in 34 MDS patients and 10 controls revealed its
0.52-fold downregulation in patients with MDS compared with controls (NOR) and was downregulated 0.55-fold in
MDS-MSCs compared with NOR-MSCs. Transfection of MDS-MSCs with the miR-103-3p mimic improved osteogenic
differentiation and decreased adipogenic differentiation in vitro, while inhibition of miR-103-3p showed the opposite
results in NOR-MSCs. Thus, the expression of miR-103-3p decreases in MDS BM plasma and MDS-MSCs, significantly
impacting MDS-MSCs differentiation. The miR-103-3p mimics may boost MDS-MSCs osteogenic differentiation while
weakening lipid differentiation, thereby providing possible target for the treatment of MDS pathogenesis. 相似文献
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Spermatogenesis is a highly efficient and intricate process in the testis by which mature spermatozoa are
produced daily to maintain lifelong male fertility. Essential to this process are spermatogonia capable of both
proliferation and differentiation. Nevertheless, the underlying mechanisms for spermatogonial proliferation and
differentiation remain poorly understood. MicroRNAs (miRNAs) are a category of non-coding small RNAs with
regulatory functions by binding to the 3’ untranslated region (UTR) of the target mRNA. Previous studies have
demonstrated that miRNAs are capable of modulating cell proliferation, differentiation and apoptosis, but the roles of
individual miRNAs in spermatogonial fate determination remain largely elusive. Here, by using a mouse
spermatogonial cell line (GC-1), we investigated the role for miRNA-382 in spermatogonial proliferation. We found
that pre-miRNA-382 was expressed in spermatogonia. The luciferase reporter assay demonstrated Kmt5a but not
Top1 as a target gene of miRNA-382. Overexpression of miRNA-382 by transfecting a miRNA mimic downregulated
Kmt5a at both RNA and protein levels, and further reduced the proliferation and viability of spermatogonia.
Knockdown of Kmt5a by RNA interference (RNAi) resulted in a uniform phenotype in spermatogonia. We therefore
conclude that miRNA-382 inhibits the proliferation of mouse spermatogonia by targeting Kmt5a. Our finding extends
the knowledge about the regulatory roles of miRNAs in spermatogonia and lays the groundwork for diagnosis and
treatment of male infertility. 相似文献
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Background: Inflammatory bowel disease (IBD) is a chronic inflammatory disease of the gastrointestinal tract. The destruction of the intestinal epithelial barrier is one of the major pathological processes in IBD pathology. Growing evidence indicated that epithelial cell ferroptosis is linked to IBD and is considered a target process. Methods: RAS-selective lethal 3 (RSL3) was used to induce ferroptosis in intestinal epithelial cell line No. 6 (IEC-6) cells, and cell ferroptosis and the effects of tanshinone IIA (Tan IIA) were determined by cell counting kit-8 (CCK-8), reactive oxygen species (ROS) staining, Giemsa staining and transmission electron microscope (TEM). The cell viability of natural product library compounds was determined by CCK-8. The expression of ferroptosis-related genes were detected by real-time quantitative polymerase chain reaction (RT-qPCR) and western blot. Results: Treatment of IEC-6 cells results in the accumulation of ROS and typical morphological characteristics of ferroptosis. RSL3 treatment caused rapid cellular cytotoxicity which could be reversed by ferrostatin-1 (Fer-1) in IEC-6 cells. Natural product library screening revealed that Tan IIA is a potent inhibitor of IEC-6 cell ferroptosis. Tan IIA could significantly protect the RSL3-induced ferroptosis of IEC-6 cells. Furthermore, the ferroptosis suppressors, glutathione peroxidase 4 (GPX4), solute carrier family 7 member 11 (SLC7A11), and miR-17-92 were found to be early response genes in RSL3-treated cells. Treatment of IEC-6 cells with Tan IIA resulted in upregulation of GPX4, SLC7A11, and miR-17-92. Conclusion: Our study demonstrated that Tan IIA protects IEC-6 cells from ferroptosis through the upregulation of GPX4, SLC7A11, and miR-17-92. The findings might provide a theoretical grounding for the future application of Tan IIA to treat or prevent IBD. 相似文献
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QUANWEI LU YUZHEN SHI RUILI CHEN XIANGHUI XIAO PENGTAO LI JUWU GONG RENHAI PENG YOULU YUAN 《Biocell》2022,46(5):1347-1356
Aluminum-activated malate transporters (ALMT) are widely involved in plant growth and metabolic processes, including adaptation to acid soils, guard cell regulation, anion homeostasis, and seed development. Although ALMT genes have been identified in Arabidopsis, wheat, barley, and Lotus japonicus, little is known about its presence in Gossypium hirsutum L. In this study, ALMT gene recognition in diploid and tetraploid cotton were done using bioinformatics analysis that examined correlation between homology and evolution. Differentially regulated ALMT genetic profile in G. hirsutum was examined, using RNA sequencing and qRT-PCR, during six fiber developmental time-points, namely 5 d, 7 d, 10 d, 15 d, 20 d, and 25 d. We detected 36 ALMT genes in G. hirsutum, which were subsequently annotated and divided into seven sub-categories. Among these ALMT genes, 34 had uneven distribution across 14/26 chromosomes. Conserved domains and gene structure analysis indicated that ALMT genes were highly conserved and composed of exons and introns. The GhALMT gene expression profile at different DPA (days post anthesis) in different varieties of G. hirsutum is indicative of a crucial role of ALMT genes in fiber development in G. hirsutum. This study provides basis for advancements in the cloning and functional enhancements of ALMT genes in enhancing fiber development and augmenting high quality crop production. 相似文献