Species‐ and habitat‐specific otolith chemistry patterns inform riverine fisheries management

Geology and hydrology are drivers of water chemistry and thus important considerations for fish otolith chemistry research. However, other factors such as species and habitat identity may have predictive ability, enabling selection of appropriate elemental signatures prior to costly, perhaps unnecessary water/age‐0 fish sampling. The goal of this study was to develop a predictive methodology for using species and habitat identity to design efficient otolith chemistry studies. Duplicate water samples and age‐0 fish were collected from 61 sites in 4 Missouri River reservoirs for walleye Sander vitreus and one impoundment (Lake Sharpe, South Dakota) for other fishes (bluegill Lepomis macrochirus, black crappie Pomoxis nigromaculatus, gizzard shad Dorosoma cepedianum, largemouth bass Micropterus salmoides, smallmouth bass M. dolomieu, white bass Morone chrysops, white crappie P. annularis, and yellow perch Perca flavescens). Water chemistry (barium:calcium [Ba:Ca], strontium:calcium [Sr:Ca]) was temporally stable, spatially variable, and highly correlated with otolith chemistry for all species except yellow perch. Classification accuracies based on bivariate Ba:Ca and Sr:Ca signatures were high (84% across species) yet varied between floodplain and main‐channel habitats in a species‐specific manner. Thus, to maximize the reliability of otolith chemistry, researchers can use species classifications presented herein to inform habitat selection (e.g., study reservoir‐oriented species such as white bass in main‐channel environments) and habitat‐based classifications to inform species selection (e.g., focus floodplain studies on littoral species such as largemouth bass). Overall, species and habitat identity are important considerations for efficient, effective otolith chemistry studies that inform and advance fisheries and aquatic resource management.     

Fish Assemblage Structure and Habitat Associations in a Large Western River System

Longitudinal gradients of fish assemblage and habitat structure were investigated in the Kootenai River of northern Idaho. A total of 43 500‐m river reaches was sampled repeatedly with several techniques (boat‐mounted electrofishing, hoop nets and benthic trawls) in the summers of 2012 and 2013. Differences in habitat and fish assemblage structure were apparent along the longitudinal gradient of the Kootenai River. Habitat characteristics (e.g. depth, substrate composition and water velocity) were related to fish assemblage structure in three different geomorphic river sections. Upper river sections were characterized by native salmonids (e.g. mountain whitefish Prosopium williamsoni), whereas native cyprinids (peamouth Mylocheilus caurinus, northern pikeminnow Ptychocheilus oregonensis) and non‐native fishes (pumpkinseed Lepomis gibbosus, yellow perch Perca flavescens) were common in the downstream section. Overall, a general pattern of species addition from upstream to downstream sections was discovered and is likely related to increased habitat complexity and additions of non‐native species in downstream sections. Assemblage structure of the upper sections were similar, but were both dissimilar to the lower section of the Kootenai River. Species‐specific hurdle regressions indicated the relationships among habitat characteristics and the predicted probability of occurrence and relative abundance varied by species. Understanding fish assemblage structure in relation to habitat could improve conservation efforts of rare fishes and improve management of coldwater river systems. Copyright © 2015 John Wiley & Sons, Ltd.     

Spatial distribution and geomorphic condition of fish habitat in streams: an analysis using hydraulic modelling and geostatistics

Reach‐scale physical habitat assessment scores are increasingly used to make decisions about management. We characterized the spatial distribution of hydraulic habitat characteristics at the reach and sub‐reach scales for four fish species using detailed two‐dimensional hydraulic models and spatial analysis techniques (semi‐variogram analyses). We next explored whether these hydraulic characteristics were correlated with commonly used reach‐scale geomorphic assessment (RGA) scores, rapid habitat assessment (RHA) scores, or indices of fish biodiversity and abundance. River2D was used to calculate weighted usable areas (WUAs) at median flows, Q₅₀, for six Vermont streams using modelled velocity, depth estimates, channel bed data and habitat suitability curves for blacknose dace (Rhinichthys atratulus), brown trout (Salmo trutta), common shiner (Notropis cornutus) and white sucker (Catostomus commersoni) at both the adult and spawn stages. All stream reaches exhibited different spatial distributions of WUA ranging from uniform distribution of patches of high WUA to irregular distribution of more isolated patches. Streams with discontinuous, distinct patches of high score WUA had lower fish biotic integrity measured with the State of Vermont's Mixed Water Index of Biotic Integrity (MWIBI) than streams with a more uniform distribution of high WUA. In fact, the distribution of usable habitats may be a determining factor for fish communities. A relationship between predicted WUAs averaged at the reach scale and RGA or RHA scores was not found. Future research is needed to identify the appropriate spatial scales to capture the connections between usable patches of stream channel habitat. Copyright © 2008 John Wiley & Sons, Ltd.     

Age‐0 Channel Catfish Ictalurus Punctatus Growth Related to Environmental Conditions in the Channelized Missouri River,Nebraska

Large river paradigms suggest that natural flow regimes are critical for maintaining instream habitats and promoting production and growth of native aquatic organisms. Modifications to the Missouri River, Nebraska, within the past 100 years have drastically reduced shallow water habitat, homogenized the flow regime, and contributed to declines in several native species. Despite drastic flow modifications, several metrics of the Missouri River's flow regime still vary across years. We related age‐0 channel catfish growth to environmental conditions in the channelized Missouri River, Nebraska, between 1996 and 2013 using an information theoretic approach. Growth rate was most influenced by growing season duration and duration of discharges below the 25th percentile of 30‐year daily Missouri River discharges. Periods of low water may be important for juvenile growth because of channel modifications that limit critical shallow water habitat during higher within‐bank flows. Exclusion of peak discharge and peak discharge timing in the best model to predict growth is counter to conventional thoughts on river fish responses to hydrological conditions but may be reflective of the general lack of high‐magnitude flooding during the majority of our study. Future efforts to relate juvenile fish growth to environmental conditions can provide guidance for water management in the Missouri River and other regulated North American rivers. Copyright © 2015 John Wiley & Sons, Ltd.     

Community Structure of Age‐0 Fishes in Paired Mainstem and Created Shallow‐water Habitats in the Lower Missouri River

Anthropogenic alterations to aquatic ecosystems have greatly reduced and homogenized riverine habitat, especially those used by larval and juvenile fishes. Creation of shallow‐water habitats is used as a restoration technique in response to altered conditions in several studies globally, but only recently in the USA. In the summer of 2012, the U.S. Army Corps of Engineers sampled larval and juvenile fishes at six paired sites (mainstem and constructed chute shallow‐water habitats) along a section of the Missouri River between Rulo, NE and St. Louis, MO, USA. From those samples, we enumerated and identified a total of 7622 fishes representing 12 families. Community responses of fishes to created shallow‐water habitats were assessed by comparisons of species richness and diversity measures between paired sites and among sampling events. Shannon entropy measures were transformed, and gamma diversity (total diversity) was partitioned into two components, alpha (within community) and beta (between community) diversity using a multiplicative decomposition method. Mantel test results suggest site location, time of sampling event and habitat type were drivers of larval and juvenile community structure. Paired t‐test results indicated little to no differences in beta diversity between habitat types; however, chute habitats had significantly higher alpha and gamma diversity as well as increased abundances of Asian carp larvae when compared with mainstem shallow‐water habitat. Our results not only show the importance of created shallow‐water habitat in promoting stream fish diversity but also highlight the role space and time may play in future restoration and management efforts. Copyright © 2015 John Wiley & Sons, Ltd.     

A physical habitat model for predicting the effects of flow fluctuations in nursery habitats of the endangered Colorado pikeminnow (Ptychocheilus lucius)

Larval and juvenile Colorado pikeminnow (Ptychocheilus lucius) use shallow, low‐velocity, channel‐margin areas (backwaters) as nursery habitats. It is hypothesized that within‐day flow fluctuations caused by hydropower operations can directly affect the suitability of such habitats by altering water temperature and habitat geometry. Despite the importance of backwaters to juvenile fishes, there is a lack of established approaches for modelling how river management affects these habitats. Here, we describe a physical habitat model that predicts the effects of mainstem flow variation on backwater temperature, geometry and invertebrate availability. We specifically modelled these effects on habitat in a portion of the Green River in Utah below Flaming Gorge Dam. The overall model combines a cell‐based model of backwater geometry, a pond‐based temperature model and a model of invertebrate production. Results from a series of simulations suggest that the most important biological effects of within‐day flow fluctuations are likely to be those associated with the availability of invertebrate prey including (1) minimum wetted area, (2) the proportion of the backwater's volume exchanged with the mainstem, and, to a lesser degree, (3) backwater temperature. Taken together, such effects could have important implications for the growth and survival of juvenile fish when flow fluctuations are sufficiently large. Copyright © 2006 John Wiley & Sons, Ltd.     

Population effect of a large‐scale stream restoration effort on Chinook salmon in the Pahsimeroi River,Idaho

Stream habitat restoration is an important tool for fisheries management in impaired lotic systems. Although small‐scale benefits of stream habitat restoration are commonly investigated, it is difficult to demonstrate population effects. The Pahsimeroi River Chinook salmon Oncorhynchus tshawytscha population was previously restricted to the lower portion of the river by multiple irrigation structures. To address fish passage issues, a combination of restoration projects was initiated including barrier removals, instream flow enhancements and installation of fish screens on diversions. The largest barrier was removed in 2009, more than doubling the amount of accessible linear habitat. We hypothesized restoration efforts would expand the distribution of spawning salmon in the Pahsimeroi River watershed, leading to a broader distribution of juveniles. We also hypothesized a broader juvenile distribution would have population effects by reducing the prevalence of density‐dependent growth and survival. Redds were documented in newly accessible habitat immediately following barrier removal and accounted for a median of 42% of all redds in the Pahsimeroi River watershed during 2009–2015. Snorkel surveys also documented juvenile rearing in newly accessible habitat. Juvenile productivity increased from a median of 64 smolts/female spawner for brood years 2002–2008 to 99 smolts/female spawner for brood years 2009–2014. Overall, results suggested increased habitat accessibility in the Pahsimeroi River broadened the distribution of spawning adult and rearing juvenile salmon and reduced the effects of density‐dependent survival. Large‐scale stream restoration efforts can have a population effect. Despite the large‐scale effort and response, habitat restoration alone is likely not sufficient to restore this population.     

The Chalan beel in Bangladesh: Habitat and biodiversity degradation,and implications for future management

This study provides an overview of the current resources and fisheries status of the Chalan beel, and identifies the scope of opportunities to evolve existing fisheries management strategies, focusing on fish biodiversity conservation. Chalan beel is the largest, most important watershed in the North Central Bangladesh, and covers an area of about 375 km² during the monsoon season. The watershed serves about 5 million people, predominantly through fisheries and agricultural activities. Although considerably degraded over time, Chalan beel still supports a diverse ichthyofauna of major importance to the local economy and people's livelihoods. The Chalan beel area incorporates 21 rivers and 93 smaller seasonal beels of varying size. Most of the rivers and beels are at risk of partial or total degradation, as a result of agricultural encroachment, siltation and other anthropogenic activities. During the study, ≈ 83% of the rivers, and 68% of the beels in the lean season, shrunk to 0–5% of their maximum (monsoon) water‐spread area during the dry season (i.e. critical levels for survival of many fish species). A fish catch survey was carried out in the main fishing season (July to December) over two successive years in the three most important catchment areas; namely, the Gumani, Baral and Katagang Rivers. A total of 72 sampling episodes yielded 9818 individuals, representing 114 fish species. The most abundant fish species during the 2‐year study period were punti (Puntius sophore and Puntius ticto), followed by chanda (Chanda nama and Parambassis ranga), chapila (Gudusia chapra) and tengra (Mystus vittatus). The study results indicate at least 19 fish species once considered abundant can now be classified as threatened, with a possibility of local extinction. The mean fish catch was 2.08 ± 0.49 kg, and 1.29 ± 0.32 kg per hour per person, by suti jal (set bag net – the most common gear used in the beel) in 2005 and 2006, respectively, with a significant (P < 0.05) variation among catches in months and years at all three sample sites. In 2005–2006, the annual fish production in Chalan beel was 12 217 tonnes, being less than half of the production observed in 1982. The stakeholders identified several major causes they thought were directly responsible for the continued decrease in fish production and biodiversity of the beel area. Several management strategies were suggested by the same stakeholders, and the findings are discussed in the context of overall developments in the Chalan beel fisheries related to habitat and biodiversity management.     

Recent habitat association and the historical decline of Notropis simus pecosensis

Small‐bodied, riverine minnows that historically characterized fish assemblages of Great Plains rivers in North America have declined because of river fragmentation, dewatering, river channel degradation, river salinization and nonnative species introductions. The Pecos bluntnose shiner Notropis simus pecosensis, a member of this guild, persists in one segment of the Pecos River, New Mexico, USA. We characterized habitat associations for the species at two spatial scales. In general, N. s. pecosensis associated with fluvial habitats, but velocity association depended on body size, with larger individuals using swifter habitats. All N. s. pecosensis associated with relatively low depths (3–51 cm), which were most abundant in sites with relatively wide river channels (>25 m), especially when discharge was between 0.5 and 4.0 m³ s^?1. The Pecos River sub‐segment that is occupied by the core population of N. s. pecosensis (V‐ii) had a unique combination of being buffered from direct dam effects by intervening segments and sub‐segments, high sub‐segment length, substantial sediment inputs from numerous uncontrolled tributaries, substantial base flow provided by irrigation return flows and groundwater inflows, high channel width in relation to discharge and low salinity. Although no unoccupied Pecos River segment appears to be suitable for N. s. pecosensis, habitat restoration opportunities exist within all occupied sub‐segments (V‐i, V‐ii and V‐iii) via base flow enhancement and river channel restoration. Restoration that offsets chronic effects of dams may be necessary to conserve the species. Restoration would also benefit other rare riverine minnows that coexist with N. s. pecosensis. Copyright © 2008 John Wiley & Sons, Ltd.     

Influence of habitat restoration on post‐emergence displacement of brown trout (Salmo trutta L.): A case study in a Northern Swedish stream

During the 19th and 20th centuries, Swedish streams were channelized to facilitate the commercial transport of timber on water. Stream‐dwelling fish were affected by the consequent reduction in habitat quality. To mitigate the effects on salmonids, which sustain important recreational fisheries, many streams have been restored through the replacement of boulders into the channel since the early 1980s. However, the effects of restoration on salmonids remain poorly known. This study assesses the effect of habitat restoration on the post‐emergence displacement of brown trout (Salmo trutta L.) fry. Hatchery‐raised fry were released in a third‐order stream canalized for timber floating in northern Sweden, and the effect of restoration on displacement was assessed. The short‐term (24 h) displacement of trout fry was reduced from 10.1 to 2.3% of fry released following restoration. Water velocity accounted for 89.4% of the variation in fry displacement across years and sites. Post‐summer recruitment (the proportion of introduced juvenile trout remaining in the study reaches 60 days after the emergence) increased approximately three fold after restoration. These findings suggest that habitat restoration benefit trout populations through substantial reductions of fry displacement and possible contributions to juvenile recruitment. Copyright © 2009 John Wiley & Sons, Ltd.     

Seasonal Rearing Habitat in a Large Mediterranean‐Climate River: Management Implications at the Southern Extent of Pacific Salmon (Oncorhynchus spp.)

Pacific salmon (Oncorhynchus) use a variety of rearing environments prior to seaward migration, yet large river habitats and their use have not been well defined, particularly at the southernmost salmon range where major landscape‐level alterations have occurred. We explored juvenile Chinook salmon (Oncorhynchus tshawytscha) and steelhead (Oncorhynchus mykiss) presence along the river continuum and in main‐channel and off‐channel habitats of a regulated California Mediterranean‐climate river. Over an 8‐year period, off‐channels of the lower Mokelumne River exhibited slower and warmer water than the main‐channel. Probability of salmonid presence varied by stream reach and habitat types. Steelhead and Chinook salmon both demonstrated transitional responses to the dry season, with juveniles leaving off‐channels by midsummer. This corresponded to flow recession, increasing water temperatures, salmonid growth and end of emigration period. Main‐channel steelhead observations continued until the following storm season, which brought cool flood flows to reconnect off‐channels and the next juvenile cohort of both species to the river. Within arid climates, low‐gradient off‐channels appear more transiently used than in cooler and more northern humid climate systems. Within a highly regulated Mediterranean‐climate river, off‐channel habitats become increasingly scarce, disconnected or temperature limiting in low‐gradient reaches both seasonally and due to anthropogenic modifications. These observations may provide guidance for future management within large salmon streams. Copyright © 2015 John Wiley & Sons, Ltd.     

Juvenile masu salmon in a regulated river

We examined the relationship between the physical environment and habitat use of juvenile masu salmon, Oncorhynchus masou, in the Nobori River in Hokkaido, Japan to provide a perspective for the conservation of fish habitat in regulated streams. The study was undertaken during the autumn and winter, with an emphasis on the hierarchy of three spatial scales: microhabitat, channel‐unit and reach scales. The microhabitat‐scale analysis indicated juvenile masu salmon preferred a midstream habitat type, with a greater depth (Avg. ± SD: 35.4 ± 14.2 cm) and high (43.4 ± 23.1 cm s^?1) and uniform current velocities during the autumn, and a channel margin habitat type with a moderate current (about 20 cm s^?1) and submerged cover during winter. In addition, different cover types have different roles in determining juvenile salmon distributions during winter. Grass cover had extremely high carrying capacities, whereas coarse substrate cover provided winter habitat for larger juvenile salmon. Channel‐unit scale analyses showed that abundance of juvenile salmon tended to be higher in pools than runs in the autumn through winter. Reach‐scale analysis showed that abundance and mean body length of juvenile salmon significantly differed between differently regulated reaches during winter, associated with the dominant cover type in each reach. This study demonstrated that the habitat conditions determining juvenile masu salmon distribution differ according to the season and scale of analysis. Therefore, for conservation of fish communities, it is important to evaluate and conserve or create fish habitats in regulated reaches, with a focus on the hierarchy of spatial scales and seasonal differences. Copyright © 2007 John Wiley & Sons, Ltd.     

JUVENILE SALMON RESPONSE TO THE PLACEMENT OF ENGINEERED LOG JAMS (ELJS) IN THE ELWHA RIVER,WASHINGTON STATE,USA

Engineered log jams (ELJs) are increasingly being used in large rivers to create fish habitat and as an alternative to riprap for bank stabilization. However, there have been few studies that have systematically examined how juvenile salmonids utilized these structures relative to other available habitat. We examined Chinook salmon (Oncorhynchus tshawytscha), coho salmon (O. kisutch) and trout (O. mykiss and O. clarki) response to the placement of engineered log jams (ELJs) in the Elwha River, Washington State, USA. We used summer snorkel surveys and a paired control‐treatment design to determine how engineered log jams in a large river system affect the density of juvenile salmon. We hypothesized that densities of juvenile salmonids would be greater in habitats with ELJs than in habitats without ELJs in the Elwha River and that this ELJ effect would vary by species and size class. Juvenile salmonid density was higher in ELJ units for all control‐treatment pairs except for one pair in 2002 and one pair in 2003. Positive mean differences in juvenile salmon densities between ELJ and non‐ELJ units were observed in two of four years for all juvenile salmon, trout greater than 100 mm and juvenile Chinook salmon. Positive mean differences occurred in one of 4 years for juvenile coho salmon and trout less than 100 mm. The results suggest that ELJs are potentially useful for restoring juvenile salmon habitat in the Elwha River, Washington State, USA. Copyright © 2011 John Wiley & Sons, Ltd.     

Simulated effects of host fish distribution on juvenile unionid mussel dispersal in a large river

Larval mussels (Family Unionidae) are obligate parasites on fish, and after excystment from their host, as juveniles, they are transported with flow. We know relatively little about the mechanisms that affect dispersal and subsequent settlement of juvenile mussels in large rivers. We used a three‐dimensional hydrodynamic model of a reach of the Upper Mississippi River with stochastic Lagrangian particle tracking to simulate juvenile dispersal. Sensitivity analyses were used to determine the importance of excystment location in two‐dimensional space (lateral and longitudinal) and to assess the effects of vertical location (depth in the water column) on dispersal distances and juvenile settling distributions. In our simulations, greater than 50% of juveniles mussels settled on the river bottom within 500 m of their point of excystment, regardless of the vertical location of the fish in the water column. Dispersal distances were most variable in environments with higher velocity and high gradients in velocity, such as along channel margins, near the channel bed, or where effects of river bed morphology caused large changes in hydraulics. Dispersal distance was greater and variance was greater when juvenile excystment occurred in areas where vertical velocity (w) was positive (indicating an upward velocity) than when w was negative. Juvenile dispersal distance is likely to be more variable for mussels species whose hosts inhabit areas with steeper velocity gradients (e.g. channel margins) than a host that generally inhabits low‐flow environments (e.g. impounded areas). Copyright © 2010 John Wiley & Sons, Ltd.     

Food‐web patterns and diversity in tropical fish communities

The food webs for three Sri Lankan reservoirs, Minneriya (ancient and shallow), Udawalawe (young and shallow) and Victoria (young and deep), were compared. The species richness of the fish communities was highest in Minneriya (30 species), intermediate in Udawalawe (21 species) and lowest in Victoria (18 species). The fish species belonged to 11 families, with Cyprinidae dominating the community in terms of both abundance and species richness. The daily quantity of food consumed per fish species was used to distinguish weak from strong trophic interactions in these food webs. The fish community consumption pattern was characterized by a few strong interactions and many weak ones. The number of major consumers (i.e. contributing >5% of the total fish community consumption) for each reservoir was small and similar for all three reservoirs. Dawkinsia singhala and Amblypharyngodon melettinus were the two major consumers in all three reservoir food webs. Puntius chola was a major consumer in Minneriya and Victoria, although not in Udawalawe, where it fed less on detritus than for the other two food webs. The fish community fed mainly at the bottom of the food web, primarily on algae, macrophytes and detritus in all three reservoirs, with very little piscivory occurring. The average food‐web length was measured as the mean trophic index weighted for the consumption rates of the various fish populations that together comprised the fish community. The average food‐web length in these three Sri Lankan reservoirs relatively short, compared with most other tropical lake/reservoir food webs in Asia and Africa for which relevant data were available. Furthermore, traditionally unexploited species (Oreochromis mossambicus; O. niloticus), in contrast to species of commercial fisheries interest, are major role players in the trophic dynamics of reservoir ecosystems. Thus, based on this study, the potential of their exploitation should be considered in the management of reservoir fisheries.     

Predicted Native Fish Response,Potential Rewards and Risks from Flow Alteration in a New Mexico Arid Mountain Stream

Water and natural resource managers are concerned with evaluating how fish habitat and populations may respond to water diversions and small‐scale flow augmentations. We used two‐dimensional hydraulic models, habitat suitability curves and an individual‐based population viability model to assess whether flow augmentations of about 0.28–0.57 m³/s would create suitable habitat for federally listed native fish loach minnow Rhinichthys cobitis and spikedace Meda fulgida in a reach of the Gila River, New Mexico, and then examined how fish population viability may change under a variety of colonization and extinction scenarios. These simulations help to inform water management decisions in a reach of the Gila River where river diversions currently exist and new diversions and augmentations are being proposed. Our results suggest that the flow augmentations evaluated will result in small changes (on average across life stages, ?0.22% to 4.06%) in suitable habitat for loach minnow and spikedace depending on augmentation scenario and fish life stage. While these percent changes are small, they would result in a reduction in the dewatering of the river channel in a river reach where native fish abundance is thought to be low. Actual native fish responses to these habitat changes are unknown; however, these flow augmentations could potentially allow these native species to re‐colonize this river segment from upstream or downstream sources increasing species distribution and likely population viability. Maintaining viable populations of native fish in this river reach is dependent on complex factors including persistence of suitable habitat for multiple life stages, connectivity with other populations and minimizing risk of invasion from non‐native species. We recommend that these predictions from the habitat and population models be tested and verified in an adaptive management framework linking modelling, experimental management, monitoring and reassessment to inform water management decisions in the Gila River. Copyright © 2017 John Wiley & Sons, Ltd.     

A probability-based model to quantify the impact of hydropeaking on habitat suitability in rivers

A negative effect of hydropower on river environment includes rapid changes in flow and habitat conditions. Any sudden flow change could force fish to move towards a refuge area in a short period of time, causing serious disturbances in the life cycle of the fish. A probability-based model was developed to quantify the impact of hydropeaking on habitat suitability for two fish species, brown trout (Salamo trutta) and Grayling (Thymallus thymallus). The model used habitat preference curves, river velocity and depth to develop the suitability maps. The suitability maps reveal that habitat suitability deteriorates as flow increases in the studied part of the river. The probability model showed that, on average, suitability indices are higher for adult grayling than juvenile trout in hydropeaking events in this part of the river. The method developed shows the potential to be used in river management and the evaluation of hydropeaking impacts in river systems affected by hydropower.     

Habitat used by Macrhybopsis chubs associated with channel modifying structures in a large regulated river: implications for river modification

We examined use of channel modifying structures (CMS; e.g., engineered rock dikes, channel sandbars) and their associated smaller spatial‐scale habitats (SSH) on lower Missouri River, USA, by speckled chub (Macrhybopsis aestivalis), sicklefin chub (M. meeki) and sturgeon chub (M. gelida) from June through October, 2006 to identify important habitat characteristics that could aid conservation. We sampled chubs primarily in six CMS types: L‐dikes, wing‐dikes, kicker dikes, rootless dikes, channel sandbars and bank‐lines. Ninety‐three per cent of chubs were collected from L‐dikes, wing‐dikes and channel sandbars. Unidentifiable Macrhybopsis chubs (UHY) were less than 35‐mm TL, were collected early in the sampling season and were most associated with L‐dikes where mean bottom current velocity was slow (0.07 m/s). Chubs large enough to be identified to species were associated with large channel sandbars where mean bottom current velocity was faster (0.34 m/s). Chubs from wing‐dikes were more abundant in shallow water (<1.2 m deep) adjacent to bars than in deeper (>1.2 m deep), open‐water areas (p = 0.007). Month accounted for 54% and CMS with SSH 18% of explained variation in chub species distribution and abundance. Our results demonstrate that CMS in the contemporary lower Missouri River channel provide multiple habitats for multiple life‐stages of Macrhybopsis chubs (e.g., nursery and post‐nursery habitats). L‐ and wing‐dikes may provide surrogate nursery habitats for chubs where in‐channel slow‐velocity areas were lost after river channelization. Managing CMS to address life history stages and an ecologically appropriate proportion and distribution of dike to channel sandbar habitats may be critical for conservation of native Macrhybopsis chubs in lower Missouri River. Published in 2008 by John Wiley & Sons, Ltd.     

Applicability of the flood‐pulse concept in a temperate floodplain river ecosystem: thermal and temporal components

Annual growth increments were calculated for blue catfish (Ictalurus furcatus) and flathead catfish (Pylodictis olivaris) from the lower Mississippi River (LMR) to assess hypothesized relationships between fish growth and floodplain inundation as predicted by the Flood‐Pulse Concept. Variation in catfish growth increment was high for all age classes of both species, and growth increments were not consistently related to various measures of floodplain inundation. However, relationships became stronger, and usually direct, when water temperature was integrated with area and duration of floodplain inundation. Relationships were significant for four of six age classes for blue catfish, a species known to utilize floodplain habitats. Though similar in direction, relationships were weaker for flathead catfish, which is considered a more riverine species. Our results indicate the Flood‐Pulse Concept applies more strongly to temperate floodplain‐river ecosystems when thermal aspects of flood pulses are considered. We recommend that future management of the LMR should consider ways to ‘recouple’ the annual flood and thermal cycles. An adaptive management approach will allow further determination of important processes affecting fisheries production in the LMR. Copyright © 2006 John Wiley & Sons, Ltd.     

Developing habitat associations for fishes in Lake Winnipeg by linking large scale bathymetric and substrate data with fish telemetry detections

Understanding relationships between freshwater fishes and habitat is critical for effective fisheries and habitat management. Habitat suitability indices (HSI) are commonly used to describe fish–habitat associations in rivers and other freshwater ecosystems. When applied to large lakes however, standard sampling procedures are inadequate because of larger sampling areas and an increased risk of fish collection bias through one-time observations. Here, we use lake bathymetry, substrate, and multiple fish telemetry detections collected from a systematically deployed receiver grid to develop HSI for four fish species (lake sturgeon, freshwater drum, common carp, and walleye) in Lake Winnipeg. Seasonal variations in habitat use based on water depth and substrate were observed in three of four species. Lake sturgeon remained in shallow locations with predominantly gravel substrate near the mouth of the Winnipeg River regardless of season. Freshwater drum persisted over fine substrate in both summer and winter but had a broader depth range in the summer compared to winter. Common carp shifted from mid-range depths and silt substrate in the summer to shallow depths and gravel substrate in the winter. Walleye showed an unchanging association to fine substrate but expanded from primarily mid-range depths in the summer to include shallower depths in the winter. These findings show how multiple telemetry detections per fish can be combined with hydroacoustic data to provide informative habitat associations for fishes in a large lacustrine ecosystem.