不确定图间α-β子图同构匹配算法

子图查询返回图数据集合中所有包含查询图的数据图。在查询图和数据图同时为不确定性图的前提下,提出了不确定图间的期望子图同构定义和α-β子图同构匹配定义。不确定图间的期望子图同构是确定图上子图同构在概率图模型上的直接推广,不确定图间α-β子图同构利用两个限制阈值来衡量查询图和数据图间的匹配质量。文章详细阐述了α-β子图同构匹配的语义特点,分析了其和期望子图同构的联系和差别,设计实现α-β子图同构匹配判定算法。     

GSO:基于图神经网络的深度学习计算图子图替换优化框架

深度学习在各种实际应用中取得了巨大成功,如何有效提高各种复杂的深度学习模型在硬件设备上的执行效率是该领域重要的研究内容之一.深度学习框架通常将深度学习模型表达为由基础算子构成的计算图,为了提高计算图的执行效率,传统的深度学习系统通常基于一些专家设计的子图替换规则,采用启发式搜索算法来优化计算图.它们的不足主要有:1)搜...     

gMLC: a multi-label feature selection framework for graph classification

Graph classification has been showing critical importance in a wide variety of applications, e.g. drug activity predictions and toxicology analysis. Current research on graph classification focuses on single-label settings. However, in many applications, each graph data can be assigned with a set of multiple labels simultaneously. Extracting good features using multiple labels of the graphs becomes an important step before graph classification. In this paper, we study the problem of multi-label feature selection for graph classification and propose a novel solution, called gMLC, to efficiently search for optimal subgraph features for graph objects with multiple labels. Different from existing feature selection methods in vector spaces that assume the feature set is given, we perform multi-label feature selection for graph data in a progressive way together with the subgraph feature mining process. We derive an evaluation criterion to estimate the dependence between subgraph features and multiple labels of graphs. Then, a branch-and-bound algorithm is proposed to efficiently search for optimal subgraph features by judiciously pruning the subgraph search space using multiple labels. Empirical studies demonstrate that our feature selection approach can effectively boost multi-label graph classification performances and is more efficient by pruning the subgraph search space using multiple labels.     

A decision tree approach to graph and subgraph isomorphism detection

A new approach to the problem of graph and subgraph isomorphism detection from an input graph to a database of model graphs is proposed in this paper. It is based on a preprocessing step in which the model graphs are used to create a decision tree. At run time, subgraph isomorphisms are detected by means of decision tree traversal. If we neglect the time needed for preprocessing, the computational complexity of the new graph algorithm is only polynomial in the number of input graph vertices. In particular, it is independent of the number of model graphs and the number of edges in any of the graphs. However, the decision tree is of exponential size. Several pruning techniques which aim at reducing the size of the decision tree are presented. A computational complexity analysis of the new method is given and its behavior is studied in a number of practical experiments with randomly generated graphs.     

Fast processing of graph queries on a large database of small and medium-sized data graphs

We propose a new way of indexing a large database of small and medium-sized graphs and processing exact subgraph matching (or subgraph isomorphism) and approximate (full) graph matching queries. Rather than decomposing a graph into smaller units (e.g., paths, trees, graphs) for indexing purposes, we represent each graph in the database by its graph signature, which is essentially a multiset. We construct a disk-based index on all the signatures via bulk loading. During query processing, a query graph is also mapped into its signature, and this signature is searched using the index by performing multiset operations. To improve the precision of exact subgraph matching, we develop a new scheme using the concept of line graphs. Through extensive evaluation on real and synthetic graph datasets, we demonstrate that our approach provides a scalable and efficient disk-based solution for a large database of small and medium-sized graphs.     

Structure and attribute index for approximate graph matching in large graphs

The increasing popularity of graph data in various domains has lead to a renewed interest in developing efficient graph matching techniques, especially for processing large graphs. In this paper, we study the problem of approximate graph matching in a large attributed graph. Given a large attributed graph and a query graph, we compute a subgraph of the large graph that best matches the query graph. We propose a novel structure-aware and attribute-aware index to process approximate graph matching in a large attributed graph. We first construct an index on the similarity of the attributed graph, by partitioning the large search space into smaller subgraphs based on structure similarity and attribute similarity. Then, we construct a connectivity-based index to give a concise representation of inter-partition connections. We use the index to find a set of best matching paths. From these best matching paths, we compute the best matching answer graph using a greedy algorithm. Experimental results on real datasets demonstrate the efficiency of both index construction and query processing. We also show that our approach attains high-quality query answers.     

Matching graphs with unique node labels

A special class of graphs is introduced in this paper. The graphs belonging to this class are characterised by the existence of unique node labels. A number of matching algorithms for graphs with unique node labels are developed. It is shown that problems such as graph isomorphism, subgraph isomorphism, maximum common subgraph (MCS) and graph edit distance (GED) have a computational complexity that is only quadratic in the number of nodes. Moreover, computing the median of a set of graphs is only linear in the cardinality of the set. In a series of experiments, it is demonstrated that the proposed algorithms run very fast in practice. The considered class makes the matching of large graphs, consisting of thousands of nodes, computationally tractable. We also discuss an application of the considered class of graphs and related matching algorithms to the classification and detection of abnormal events in computer networks.     

从不确定图中挖掘频繁子图模式

研究不确定图数据的挖掘,主要解决不确定图数据的频繁子图模式挖掘问题.介绍了一种数据模型来表示图的不确定性,以及一种期望支持度来评价子图模式的重要性.利用期望支持度的Apriori性质,给出了一种基于深度优先搜索策略的挖掘算法.该算法使用高效的期望支持度计算方法和搜索空间裁剪技术,使得计算子图模式的期望支持度所需的子图同构测试的数量从指数级降低到线性级.实验结果表明,该算法比简单的深度优先搜索算法快3～5个数量级,有很高的效率和可扩展性.     

挖掘不确定频繁子图的改进算法的研究

鉴于图结构能简单方便地描绘复杂的数据以及实际应用中图数据的获得具有不确定性,不确定频繁子图挖掘算法得到广泛的研究。目前一个典型的图挖掘算法是MUSE,但MUSE算法存在期望支持度计算消耗大、时间效率不够高等问题。针对此问题提出了一种基于划分思想混合搜索策略的不确定子图挖掘算法EDFS,它用改进过的GSpan算法进行不确定的子图数据预处理,用裁剪子图模式的搜索空间裁剪不确定子图数据,用基于划分思想的混合策略进行频繁子图的挖掘。子图同构与边存在概率的实验结果证明了EDFS算法能更高效地挖掘出不确定数据频繁子图。     

Density-based data partitioning strategy to approximate large-scale subgraph mining

Recently, graph mining approaches have become very popular, especially in certain domains such as bioinformatics, chemoinformatics and social networks. One of the most challenging tasks is frequent subgraph discovery. This task has been highly motivated by the tremendously increasing size of existing graph databases. Due to this fact, there is an urgent need of efficient and scaling approaches for frequent subgraph discovery. In this paper, we propose a novel approach for large-scale subgraph mining by means of a density-based partitioning technique, using the MapReduce framework. Our partitioning aims to balance computational load on a collection of machines. We experimentally show that our approach decreases significantly the execution time and scales the subgraph discovery process to large graph databases.     

多编码树GPU并行轴心子图匹配

子图同构问题是非确定多项式(NP)完全问题,而轴心子图同构是一种特殊的子图同构问题.针对现在已经有许多高效的子图同构算法,然而对于轴心子图同构问题目前并没有基于GPU的搜索算法,且通过改造已有的子图同构算法来解决轴心子图匹配问题会产生大量不必要的中间结果这一问题,提出了一种基于GPU的轴心子图同构算法.首先,通过一种新...     

Discovering Frequent Graph Patterns Using Disjoint Paths

Whereas data mining in structured data focuses on frequent data values, in semistructured and graph data mining, the issue is frequent labels and common specific topologies. The structure of the data is just as important as its content. We study the problem of discovering typical patterns of graph data, a task made difficult because of the complexity of required subtasks, especially subgraph isomorphism. In this paper, we propose a new apriori-based algorithm for mining graph data, where the basic building blocks are relatively large, disjoint paths. The algorithm is proven to be sound and complete. Empirical evidence shows practical advantages of our approach for certain categories of graphs     

Frequent subgraph mining in outerplanar graphs

In recent years there has been an increased interest in frequent pattern discovery in large databases of graph structured objects. While the frequent connected subgraph mining problem for tree datasets can be solved in incremental polynomial time, it becomes intractable for arbitrary graph databases. Existing approaches have therefore resorted to various heuristic strategies and restrictions of the search space, but have not identified a practically relevant tractable graph class beyond trees. In this paper, we consider the class of outerplanar graphs, a strict generalization of trees, develop a frequent subgraph mining algorithm for outerplanar graphs, and show that it works in incremental polynomial time for the practically relevant subclass of well-behaved outerplanar graphs, i.e., which have only polynomially many simple cycles. We evaluate the algorithm empirically on chemo- and bioinformatics applications.     

Fast graph similarity search via hashing and its application on image retrieval

Similarity search in graph databases has been widely investigated. It is worthwhile to develop a fast algorithm to support similarity search in large-scale graph databases. In this paper, we investigate a k-NN (k-Nearest Neighbor) similarity search problem by locality sensitive hashing (LSH). We propose an innovative fast graph search algorithm named LSH-GSS, which first transforms complex graphs into vectorial representations based on prototypes in the database and later accelerates a query in Euclidean space by employing LSH. Because images can be represented as attributed graphs, we propose an approach to transform attributed graphs into n-dimensional vectors and apply LSH-GSS to execute further image retrieval. Experiments on three real graph datasets and two image datasets show that our methods are highly accurate and efficient.     

Detecting subgraph isomorphism with MapReduce

In recent years, the MapReduce framework has become one of the most popular parallel computing platforms for processing big data. MapReduce is used by companies such as Facebook, IBM, and Google to process or analyze massive data sets. Since the approach is frequently used for industrial solutions, the algorithms based on the MapReduce framework gained significant attention within the scientific community. The subgraph isomorphism is a fundamental graph theory problem. Finding small patterns in large graphs is a core challenge in the analysis of applications with big data sets. This paper introduces two novel algorithms, which are capable of finding matching patterns in arbitrary large graphs. The algorithms are designed for utilizing the easy parallelization technique offered by the MapReduce framework. The approaches are evaluated regarding their space and memory requirements. The paper also provides the applied data structure and presents formal analysis of the algorithms.     

An Efficient Framework for Multiple Subgraph Pattern Matching Models

With the popularity of storing large data graph in cloud, the emergence of subgraph pattern matching on a remote cloud has been inspired. Typically, subgraph pattern matching is defined in terms of subgraph isomorphism, which is an NP-complete problem and sometimes too strict to find useful matches in certain applications. And how to protect the privacy of data graphs in subgraph pattern matching without undermining matching results is an important concern. Thus, we propose a novel framework to achieve the privacy-preserving subgraph pattern matching in cloud. In order to protect the structural privacy in data graphs, we firstly develop a k-automorphism model based method. Additionally, we use a cost-model based label generalization method to protect label privacy in both data graphs and pattern graphs. During the generation of the k-automorphic graph, a large number of noise edges or vertices might be introduced to the original data graph. Thus, we use the outsourced graph, which is only a subset of a k-automorphic graph, to answer the subgraph pattern matching. The efficiency of the pattern matching process can be greatly improved in this way. Extensive experiments on real-world datasets demonstrate the high efficiency of our framework.

     

A user parameter-free approach for mining robust sequential classification rules

Recent years have witnessed extensive studies of graph classification due to the rapid increase in applications involving structural data and complex relationships. To support graph classification, all existing methods require that training graphs should be relevant (or belong) to the target class, but cannot integrate graphs irrelevant to the class of interest into the learning process. In this paper, we study a new universum graph classification framework which leverages additional “non-example” graphs to help improve the graph classification accuracy. We argue that although universum graphs do not belong to the target class, they may contain meaningful structure patterns to help enrich the feature space for graph representation and classification. To support universum graph classification, we propose a mathematical programming algorithm, ugBoost, which integrates discriminative subgraph selection and margin maximization into a unified framework to fully exploit the universum. Because informative subgraph exploration in a universum setting requires the search of a large space, we derive an upper bound discriminative score for each subgraph and employ a branch-and-bound scheme to prune the search space. By using the explored subgraphs, our graph classification model intends to maximize the margin between positive and negative graphs and minimize the loss on the universum graph examples simultaneously. The subgraph exploration and the learning are integrated and performed iteratively so that each can be beneficial to the other. Experimental results and comparisons on real-world dataset demonstrate the performance of our algorithm.     

NODAR: mining globally distributed substructures from a single labeled graph

Data mining in structured and semi-structured data focuses on frequent data values. However, in graph data mining, the focus is on common specific topologies. Graph mining, although its ubiquity, is a difficult task since it requires subgraph isomorphism which is known to be NP-complete. In order to effectively prune the search space and thereby save computational time, a graph mining algorithm requires that the support measure of a pattern to be no greater than that of its subpatterns. This property of the support measure is referred to in the literature as the down-closure, anti-monotonicity or admissibility. Unfortunately, when mining a single labeled graph, simply counting the occurrences of a graph pattern may not have the down-closure property. For this, most existing approaches mine frequent substructures in a set of labeled graphs (called also the transactional setting) and few efforts have been devoted to mining frequent globally distributed substructures in a single labeled graph. In this paper, we propose a graph mining algorithm, called NODAR(Non-Overlapping embeDding based grAph mineR), for computing common and globally distributed substructures in a single labeled graph. NODAR adopts the Depth-First Search (DFS) strategy and is based on the SMNOES (Size of Maximum Non Overlapping Embedding Set) as support measure. The core idea of NODAR is to automatically extract frequent subpatterns; and thus without frequency computation thanks to the down-closure property of SMNOES. By adopting this strategy in the computation of frequent substructures, NODAR reduces the number of subgraph isomorphism tests needed to compute pattern frequencies. Experimental results on monograph and transactional graph databases; and comparison with well-known probabilistic and exact algorithms; prove the efficacy of NODAR.     

Solving subgraph isomorphism problems with constraint programming

The subgraph isomorphism problem consists in deciding if there exists a copy of a pattern graph in a target graph. We introduce in this paper a global constraint and an associated filtering algorithm to solve this problem within the context of constraint programming. The main idea of the filtering algorithm is to label every node with respect to its relationships with other nodes of the graph, and to define a partial order on these labels in order to express compatibility of labels for subgraph isomorphism. This partial order over labels is used to filter domains. Labelings can also be strengthened by adding information from the labels of neighbors. Such a strengthening can be applied iteratively until a fixpoint is reached. Practical experiments illustrate that our new filtering approach is more effective on difficult instances of scale free graphs than state-of-the-art algorithms and other constraint programming approaches.     

Lindex: a lattice-based index for graph databases

Subgraph querying has wide applications in various fields such as cheminformatics and bioinformatics. Given a query graph, q, a subgraph-querying algorithm retrieves all graphs, D(q), which have q as a subgraph, from a graph database, D. Subgraph querying is costly because it uses subgraph isomorphism tests, which are NP-complete. Graph indices are commonly used to improve the performance of subgraph querying in graph databases. Subgraph-querying algorithms first construct a candidate answer set by filtering out a set of false answers and then verify each candidate graph using subgraph isomorphism tests. To build graph indices, various kinds of substructure (subgraph, subtree, or path) features have been proposed with the goal of maximizing the filtering rate. Each of them works with a specifically designed index structure, for example, discriminative and frequent subgraph features work with gIndex, δ-TCFG features work with FG-index, etc. We propose Lindex, a graph index, which indexes subgraphs contained in database graphs. Nodes in Lindex represent key-value pairs where the key is a subgraph in a database and the value is a list of database graphs containing the key. We propose two heuristics that are used in the construction of Lindex that allows us to determine answers to subgraph queries conducting less subgraph isomorphism tests. Consequently, Lindex improves subgraph-querying efficiency. In addition, Lindex is compatible with any choice of features. Empirically, we demonstrate that Lindex used in conjunction with subgraph indexing features proposed in previous works outperforms other specifically designed index structures. As a novel index structure, Lindex (1) is effective in filtering false graphs (2) provides fast index lookups, (3) is fast with respect to index construction and maintenance, and (4) can be constructed using any set of substructure index features. These four properties result in a fast and scalable subgraph-querying infrastructure. We substantiate the benefits of Lindex and its disk-resident variation Lindex+ theoretically and empirically.