Detection of Bacillus globigii spores using a Fourier transform infrared-attenuated total reflection method

The use of an alumina-coated ZnSe internal reflection element (IRE) to detect spores by attenuated total reflection infrared spectroscopy (FTIR-ATR) was investigated. Two methods for coating the IRE with alumina are described. It is shown that the adsorption proceeds through an interaction of the carboxylate groups on Bacillus globigii (BG) and positively charged sites on the alumina. The amount adsorbed is highly dependent on solution pH and passes through a maximum value near pH 5, which is dictated by the charge density on the spores and the charge density on the alumina surface. Furthermore, it is shown that lateral-lateral repulsion between the spores limits the maximum adsorbed amount, giving rise to a detection limit of 10(7) spores per cm(2) of the IRE.     

Simultaneous monitoring of organic acids and sugars in fresh and processed apple juice by Fourier transform infrared-attenuated total reflection spectroscopy

A combination of Fourier transform infrared spectroscopy (FT-IR) and chemometrics was used as a screening tool for the determination of sugars and organic acids such as sucrose, glucose, fructose, sorbitol, citric acid, and malic acid in processed commercial and extracted fresh apple juices. Prepared samples of synthetic apple juice in different constituent concentration ranges were scanned by attenuated total reflectance (ATR) accessory and the spectral region in the range between 950 and 1500 cm(-1) was selected for calibration model development using partial least squares (PLS) regression and principal component regression (PCR). The calibration models were successfully validated by high-performance liquid chromatography (HPLC) measurements against several commercial juice varieties as well as juice extracted from different apple varieties to provide an overall R2 correlation of 0.998. The present study demonstrates that Fourier transform infrared spectroscopy could be used for rapid and nondestructive determination of multiple constituents in commercial and fresh apple juices. Results indicate this approach to be a rapid and cost-effective tool for routine monitoring of multiple constituents in a fruit juice production facility.     

Fourier transform infrared-attenuated total reflection nitrate determination of soil pastes using principal component regression, partial least squares, and cross-correlation

This paper investigates the use of Fourier transform infrared (FTIR) attenuated total reflectance (ATR) spectroscopy as a fast and simple way for direct determination of nitrate concentration in soil pastes, which would assist precision fertilizer placement and reduce nitrate pollution. Eight types of soils are investigated, with nitrate concentrations ranging from 0 to 1000 ppm-N. The spectral region around the nitrate band (1300-1550 cm(-1)) is analyzed by (1) principal component regression (PCR), (2) partial least squares (PLS), and (3) cross-correlation with reference libraries that include spectra of pure ions and/or soils. The main obstacle to accurate nitrate measurement appears to be an interfering band present in calcareous soils. This band, which may be due to carbonate, is located around 1450 cm(-1) and overlaps with the nitrate band centered around 1370 cm(-1). For non-calcareous soils, and in particular for light sandy agricultural soils, PLS and cross-correlation with a reference library containing only spectra of ions in water give similar results (about 8 ppm-N on dry soil basis), while PCR leads to slightly poorer results. When calcareous soils are included in the analysis, the prediction errors are about twice as large. In this case, the best results are obtained using PLS, followed by PCR, while cross-correlation with reference libraries leads to poorer results.     

Use of attenuated total reflectance Fourier transform infrared spectroscopy to monitor the development of lipid aggregate structures

Attenuated total reflectance Fourier transform infrared spectroscopy is used to monitor the adsorption of 100 nm 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) phospholipid vesicles to the surfaces of Ge, electrolessly deposited Au, and a well formed self-assembled monolayer of 1-octadecanethiol. The interaction of DPPC vesicles in solution with these different surfaces yields distinctly different surface structures: intact DPPC vesicles on Ge, a supported phospholipid bilayer on an electrolessly deposited Au surface, and a phospholipid monolayer onto the hydrophobic self-assembled monolayer. IR peak position, bandwidth, and intensity are used to confirm structure formation and quantitation of the amount of lipid that desorbs during film formation.     

Characterization of historic silk by polarized attenuated total reflectance Fourier transform infrared spectroscopy for informed conservation

When assessing historic textiles and considering appropriate conservation, display, and storage strategies, characterizing the physical condition of the textiles is essential. Our work has concentrated on developing nondestructive or micro-destructive methodologies that will permit this. Previously, we have demonstrated a correlation between the physical deterioration of unweighted and "pink" tin (IV) chloride weighted silk and certain measurable spectroscopic and chromatographic signatures, derived from polarized Fourier transform infrared attenuated total reflectance (FTIR-ATR) spectroscopy (Pol-ATR) and high-performance liquid chromatography (HPLC) microsampling analyses. The application of the Pol-ATR technique to aged silk characterization has now been extended to include a more comprehensive range of weighting methods and aging regimes. This was intended to replicate the full spectrum of states of deterioration observed in silk textiles, from pristine to heavily degraded. Breaking strength was employed as a measure of the physical integrity of the fibers, and, as expected, decreased with aging. An orientational crystallinity parameter, reflecting the microstructural ordering of the fibroin polymer within the fibers, was derived from the Pol-ATR spectra. A good correlation was observed between the breaking strength of the variety of fibers and this parameter. This suggests that the physical state of historic silk fabrics might be adequately characterized for conservation purposes by such indirect micromethodology.     

Prediction of source rock origin by chemometric analysis of fourier transform infrared-attenuated total reflectance spectra of oil petroleum: evaluation of aliphatic and aromatic fractions by self-modeling mixture analysis

This study describes a new methodology for the interpretation of Fourier transform infrared (FT-IR) attenuated total reflectance (ATR) spectra of Algerian, Brazilian, and Venezuelan crude oils. It is based on a comparative study between a chemometric treatment and the classical one, which refers to indices calculation. In fact, the combined use of FT-IR indices and principal component analysis (PCA) has led to the classification of the studied samples in terms of geographic distribution. Quantitative analysis has been successfully realized by the supervised method partial least squares (PLS), which has permitted the prediction of the locations of oils. We have also applied another mathematical processing method, simple-to-use interactive self-modeling mixture analysis (SIMPLISMA), to evaluate the aromatic and aliphatic composition of the oils by extracting pure spectra representative of the different fractions.     

The interpolated fast Fourier transform: a comparative study

The properties of five interpolating fast Fourier transform (IFFT) methods (IFFT) are studied with respect to their systematic errors and their noise sensitivity, for a monofrequency signal. It is shown that windows with small spectral side lobes do not always result in a better overall performance of the IFFT method and that time-domain estimators can be more efficient than the analyzed IFFT methods     

Determination of the feasibility of using attenuated total reflectance Fourier transform–infrared spectroscopy to evaluate thermal ageing of enamel-coated magnet wire

A study was initiated to determine the feasibility of employing attenuated total reflectance Fourier transform–infrared spectroscopy (ATR/FT–IR) to detect changes resulting from thermal ageing in the enamel of copper magnet wire. Polyamideimide (SX-81002) was cured on a zinc selenide (ZnSe) internal reflection element (IRE) coated with a thin film of metallic copper. The coated IRE was inserted in a Circle cell housed in a heating jacket and maintained at 250°C on the optical bench of an infrared spectrometer to simulate thermal ageing of enamel-coated magnet wire. Evaluation of the infrared spectra in the fingerprint region suggested that the polymer experienced chemical degradation within a 23 day period of thermal ageing. Through comparisons with controls containing no copper coatings, and ageing studies carried out at 28°C, it was determined that ageing at elevated temperature caused more pronounced chemical changes in the polymer than did exposure to the copper. These results indicate that ATR/FT–IR may be a useful tool to detect enamel fatigue after a short period of thermal ageing.     

Structural changes of evaporated tantalum during film growth

According to the Sondheimer approximation the resistivity of an infinitely thick film with the same structure as a thin film can be determined from the graph of ?d versus d (where ? is the resistivity and d the film thickness). Since the resistivity is highly sensitive to film structure it is possible to observe structural changes by making in situ measurements during film growth. From these measurements it can be established that tantalum films condense under ultrahigh vacuum at room temperature onto oxide substrates (e.g. Corning 7059 glass, sapphire or BeO) as the β phase. It can be demonstrated that the transition temperature from β-Ta to α-Ta decreases with increasing film thickness. Increasing the substrate temperature (e.g. to 300 °C) causes the tantalum films to nucleate first as the β phase and to be converted into α-Ta during film growth. This effect is influenced by the substrate. The thickness dependence of the structure of tantalum was confirmed by ultrahigh vacuum in situ annealing experiments and electron optical investigations.     

Solvent interactions in methanol/N, N-dimethylamide binary systems studied by Fourier transform infrared-attenuated total reflection (FT-IR/ATR) and two-dimensional correlation spectroscopy (2D-COS)

The interaction of N,N-dimethyl formamide (DMF) and N,N-dimethyl acetamide (DMA) with methanol in solution mixtures was studied using Fourier transform infrared-attenuated total reflection (FT-IR/ATR) spectroscopy. The concentration-dependent FT-IR/ATR spectra of DMF/methanol and DMA/methanol mixtures were recorded in the wavenumber range 4000-650 cm(-1) to investigate wavenumber shifts as a consequence of hydrogen bonding interactions. In combination with two-dimensional correlation spectroscopy (2D-COS), the positional fluctuations observed in the ν(C=O) and ν(O-H) regions of DMF/DMA and methanol, respectively, have been discussed in terms of changing populations of differently hydrogen-bonded and interacting species of the same and different component molecules.     

Quantitative nondestructive methods for the determination of ticlopidine in tablets using reflectance near-infrared and Fourier transform Raman spectroscopy

Two different nondestructive spectroscopy methods based on near-infrared (NIR) and Fourier transform (FT) Raman spectroscopy were developed for the determination of ticlopidine-hydrochloride (TCL) in pharmaceutical formulations and the results were compared to those obtained by high-performance liquid chromatography (HPLC). An NIR assay was performed by reflectance over the 850-1700 nm region using a partial least squares (PLS) prediction model, while the absolute FT-Raman intensity of TCL's most intense vibration was used for constructing the calibration curve. For both methodologies the spectra were obtained from the as-received film-coated tablets of TCL. The two quantitative techniques were built using five "manual compressed" tablets containing different concentrations and validated by evaluating the calibration model as well as the accuracy and precision. The models were applied to commercial preparations (Ticlid). The results were compared to those obtained from the application of HPLC using the methodology described by "Sanofi Research Department" and were found to be in excellent agreement, proving that NIR, using fiber-optic probes, and FT-Raman spectroscopy can be used for the fast and reliable determination of the major component in pharmaceutical analysis.     

Impulse-induced compression rheo-optics study of polymers using attenuated total reflection based step-scan Fourier transform infrared time-resolved spectroscopy

An impulse-induced attenuated total reflection (ATR) based dynamic compression step-scan time-resolved Fourier transform rheo-optical system has been developed. This system was used to observe different viscoelastic properties of poly(ethylene terephthalate) (PET), poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) (PHBHx), and carbon-black-filled polyester-polyamide blend. In the case of PET, almost no viscoelastic response extending beyond 15 ms was observed in the dynamic absorbance difference time domain spectrum. In contrast, PHBHx showed apparently different viscoelastic responses in the dynamic absorbance difference spectrum, especially in the C=O stretching band region. A long relaxation tail of the 1723 cm(-1) band lasting about 2.7 milliseconds was clearly seen. The tail corresponds to the structural or morphological reorganization of a less ordered crystalline form (Type II) under compressive perturbation. The carbon-black-filled polyester-polyamide blend film also shows different viscoelastic response tails. In this case, the amide C=O stretching vibration band does not show distinct viscoelastic responses, suggesting that the polyamide component does not contribute much to the viscoelastic properties. The present method shows promise for characterizing a wide variety of viscoelastic materials, including polymer alloys, blends, composites, copolymers, and semicrystalline polymers.     

Fourier transform infrared reflectance microspectroscopy study of Bacillus subtilis engineered without dipicolinic acid: the contribution of calcium dipicolinate to the mid-infrared absorbance of Bacillus subtilis endospores

Mid-infrared spectra of spores of two strains of Bacillus subtilis, PS832 (wild-type) and FB122 (sleB spoVF), that are isogenic except for the two mutations in FB122 were obtained by Fourier transform infrared (FT-IR) reflectance microspectroscopy. The mutations in FB122 cause the spores of this strain to be devoid of dipicolinic acid (pyridine-2,6-dicarboxylic acid; DPA), a biomarker characteristic of bacterial spores. Analysis of these two strains by difference spectroscopy revealed a spectrum similar to that of calcium dipicolinate (CaDPA), a chelate salt of DPA. This difference spectrum was compared to mid-infrared spectra of both DPA and CaDPA, and was attributed to CaDPA only. This is the first report known to the authors of a genetically engineered organism being used to identify the spectral contribution of a particular cellular component.     

Attenuated total reflection Fourier transform infrared imaging with variable angles of incidence: a three-dimensional profiling of heterogeneous materials

Depth profiling in Fourier transform infrared (FT-IR) spectroscopic imaging has been demonstrated using a single reflection variable angle attenuated total reflection (ATR) accessory. Chemical information about samples can be obtained in three dimensions by acquiring ATR-FT-IR images at different angles of incidence through the ATR crystal. The image quality and field of view achieved at different angles of incidence has been discussed. A polymer film comprising two layers has been used as an example to demonstrate the principle of the measurement. The demonstrated approach is a promising tool to obtain depth profiles of heterogeneous materials. The extent of the measured depths is limited and ranges from approximately 0.3 to 4 microm, but the spatial resolution in the z-direction is not limited by diffraction. The development of this approach opens up the possibility to study the spatial heterogeneity of thin films including biological tissues, such as hair and skin, with high depth resolution.     

Monitoring the thermal gelation of cellulose ethers in situ using attenuated total reflectance fourier transform infrared spectroscopy

In this work attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy was used to probe the thermal gelation behavior of aqueous solutions of hydroxypropyl methylcellulose (HPMC), specifically thermal gelation and accompanying precipitation. Cloud point measurements are usually evaluated through turbidity in dilute solutions but the method cannot readily be applied to more concentrated or highly viscous solutions. From the ATR-FTIR data, intensity changes of the nu(CO) band marked the onset of gelation and information about the temperature of gelation and the effect of the gel structure on the water hydrogen bonding network was elucidated. Changes in the relative intensities of bands associated with the methoxyl groups and hydrogen-bond-forming secondary alcohol groups indicated that hydrophobic polymer chain interactions were involved in the gelation process. The dominance of inter-molecular H bonding over intra-molecular H bonding within the cellulose ether in solution was also observed. The ATR-FTIR data was in good agreement with measurements of turbidity conducted on the same systems. The work indicates significant potential for the use of ATR-FTIR for the investigation of gelation and cloud point measurements in viscous cellulosic formulations.     

Fourier transform infrared study of lipoxygenase conformation in organic solvent media

The secondary structure of commercially purified soybean lipoxygenase (EC 1.13.11.12) was investigated in selected monophasic organic solvents, including chloroform, methanol, acetonitrile, hexane, and octane. The Fourier transform infrared (FT-IR) spectra of the enzyme obtained in chloroform, methanol, and acetonitrile showed an absorption band at 1617 cm(-1) indicative of significant protein aggregation, whereas spectra of lipoxygenase in hexane and octane exhibited substantially less aggregate formation. Variable-temperature infrared studies of lipoxygenase in D(2)O show that the predominately alpha-helical structure of the protein undergoes an irreversible transition to intermolecular beta-sheet at and above 65 degrees C. Chemical imaging technology employing an FT-IR spectrometer equipped with an infrared microscope and a focal-plane array detector was used to examine the changes in the secondary structure of lipoxygenase at the water-hexane interface in the presence and absence of substrate. The secondary structure of lipoxygenase at the hexane-water interface was comparable to that of the structure of lipoxygenase in D(2)O after exposure of lipoxygenase solution to hexane.     

Single-pass attenuated total reflection Fourier transform infrared spectroscopy for the prediction of protein secondary structure

Principal component regression (PCR) was applied to a spectral library of proteins in H2O solution acquired by single-pass attenuated total reflectance (ATR) Fourier transform infrared (FT-IR) spectroscopy. PCR was used to predict the secondary structure content, principally alpha-helical and the beta-sheet content, of proteins within a spectral library. Quantitation of protein secondary structure content was performed as a proof of principle that use of single-pass ATR-FT-IR is an appropriate method for protein secondary structure analysis. The ATR-FT-IR method permits acquisition of the entire spectral range from 700 to 3900 cm(-1) without significant interference from water bands. An "inside model space" bootstrap and a genetic algorithm (GA) were used to improve prediction results. Specifically, the bootstrap was utilized to increase the number of replicates for adequate training and validation of the PCR model. The GA was used to optimize PCR parameters, particularly wavenumber selection. The use of the bootstrap allowed for adequate representation of variability in the amide A, amide B, and C-H stretching regions due to differing levels of sample hydration. Implementation of the bootstrap improved the robustness of the PCR models significantly; however, the use of a GA only slightly improved prediction results. Two spectral libraries are presented where one was better suited for beta-sheet content prediction and the other for alpha-helix content prediction. The GA-optimized PCR method for alpha-helix content prediction utilized 120 wavenumbers within the amide I, II, A, B, and IV and the C-H stretching regions and 18 factors. For beta-sheet content predictions, 580 wavenumbers within the amide I, II, A, and B and the C-H stretching regions and 18 factors were used. The validation results using these two methods yielded an average absolute error of 1.7% for alpha-helix content prediction and an average absolute error of 2.3% for beta-sheet content prediction. After the PCR models were developed and validated, they were used to predict the alpha-helix and beta-sheet content of two unknowns, casein and immunoglobulin G.     

Separation and on-line distinction of enantiomers: a non-aqueous capillary electrophoresis Fourier transform infrared spectroscopy study

We report on the separation and on-line distinction of (R,S)-3,5-dinitrobenzoyl leucine (DNB-Leu) enantiomers with non-aqueous capillary electrophoresis (CE) and Fourier transform infrared (FT-IR) spectroscopic detection using O-(tert-butyl carbamoyl) quinine (tBuCQN) as the chiral selector (CS). Due to stereoselective intermolecular interactions--particularly ionic interactions, hydrogen bonding, and pi-pi-interactions--the enantiomers undergo enantioselective complex and ion-pair formation, respectively, with the CS enabling CE separation and direct identification with FT-IR detection. Especially the (S)-enantiomer of the analyte shows significant changes in the mid-infrared region upon complexation, allowing for a clear spectral distinction between both enantiomers. In this way FT-IR spectroscopy represents a novel and attractive detection method for CE enantiomeric separations providing qualitative stereochemical information on the interactions between the chiral selector and the enantiomers, which is hardly accessible by other CE detection methods.