Sedimentary microbial oxygen demand for laminar flow over a sediment bed of finite length

Dead organic material accumulated on the bed of a lake, reservoir or wetland often provides the substrate for substantial microbial activity as well as chemical processes that withdraw dissolved oxygen (DO) from the water column. A model to estimate the actual DO profile and the "sedimentary oxygen demand (SOD)" must specify the rate of microbial or chemical activity in the sediment as well as the diffusive supply of DO from the water column through the diffusive boundary layer into the sediment. Most previous experimental and field studies have considered this problem with the assumptions that the diffusive boundary layer is (a) turbulent and (b) fully developed. These assumptions require that (a) the flow velocity above the sediment bed is fast enough to produce turbulent mixing in the boundary layer, and (b) the sediment bed is long. In this paper a model for laminar flow and SOD over a sediment bed of finite length is presented and the results are compared with those for turbulent flow. Laminar flow near a sediment bed is encountered in quiescent water bodies such as lakes, reservoirs, river backwaters, wetlands and ponds under calm wind conditions. The diffusive oxygen transfer through the laminar diffusive boundary layer above the sediment surface can restrict the microbial or chemical oxygen uptake inside the sediment significantly. The developing laminar diffusive boundary layer above the sediment/water interface is modeled based on the analogy with heat transfer, and DO uptake inside the sediment is modeled by Michaelis-Menten microbial growth kinetics. The model predicts that the rate of SOD at the beginning of the reactive sediment bed is solely dependent on microbial density in the sediment regardless of flow velocity and type. The rate of SOD, and the DO penetration depth into the sediment decrease in stream-wise direction over the length of the sediment bed, as the diffusive boundary layer above the sediment/water interface thickens. With increasing length of the sediment bed both SOD rate and DO penetration depth into the sediment tend towards zero if the flow is laminar, but tend towards a finite value if the flow is turbulent. That value can be determined as a function of both flow velocity and microbial density. The effect of the developing laminar boundary layer on SOD is strongest at the very lowest flow velocity and/or highest microbial density inside the sediment. Under quiescent conditions, the effective SOD exerted by a reactive sediment bed of a lake or wetland approaches zero, i.e. no or very little oxygen demand is exerted on the overlying water column, except at the leading edge.     

A model of microbial activity in lake sediments in response to periodic water-column mixing

Under stagnant conditions, the mass transport of a soluble substrate from a lake's water column to the sediment/water interface is limited by molecular diffusion. Stagnant conditions coupled with a continuing sediment biological demand create a substrate depletion zone above the sediment/water interface. The frequency at which the substrate depletion zone is destroyed by internal seiches and other intermittent flow phenomena influences the time-averaged substrate concentration at the sediment/water interface. A more frequent mixing results in a greater time-averaged interface concentration and consequently affects the amount of microbial biomass that can be supported in the lake sediments and the flux of the substrate into the sediment. A one-dimensional, two-substrate model is used to examine the impact of mixing frequency on the activity of sulfate-reducing bacteria (SRB) in lake sediments. In the model, sulfate is supplied from the water column, while acetate is generated within the sediments. Mass transport to and within the sediments is by molecular diffusion except for instantaneous mixing events. Between mixing events, sulfate concentration gradients form above the sediment/water interface in the diffusive boundary layer. Sulfate depletion zones can be centimeters thick. When typical biological rate and diffusion coefficients for sulfate and acetate are used as inputs, the model indicates that a more frequent water-column mixing results in greater SRB concentrations. For an assumed bulk water-column sulfate concentration of 4.8 mg x l(-1), the sediment SRB concentrations for the modeled hourly, 6-hourly, daily, and weekly mixing frequencies were 175, 136, 91, and 30 mg x m(-2), respectively. The model also predicts higher time-averaged sulfate flux rates at more frequent water-column mixing. The time-averaged sulfate flux rates for the hourly, 6-hourly, daily, and weekly mixing frequencies were 1.26, 1.13, 0.78, and 0.30 mg x m(-2)h(-1), respectively. Thus, mixing frequency can significantly impact microbial activity in lake sediments.     

Oxygen consumption by a sediment bed for stagnant water: comparison to SOD with fluid flow

A model of sedimentary oxygen demand (SOD) for stagnant water in a lake or a reservoir is presented. For the purposes of this paper, stagnant water is defined as the bottom layer of stratified water columns in relatively unproductive systems that are underlain by silt and sand-dominated sediments with low-organic carbon (C) and nitrogen (N). The modeling results are compared to those with fluid flow to investigate how flow over the sediment surface raises SOD compared to stagnant water, depending on flow velocity and biochemical activity in the sediment. SOD is found to be substantially limited by oxygen transfer in the water column when water is stagnant. When flow over the sediment surface is present, SOD becomes larger than that for stagnant water, depending on flow velocity and the biochemical oxygen uptake rate in the sediment. Flow over the sediment surface causes an insignificant raise in SOD when the biochemical oxygen uptake rate is small. The difference between SOD with fluid flow and SOD for stagnant water becomes significant as the biochemical oxygen uptake rate becomes larger, i.e. SOD is 10-100 times larger when flow over the sediment surface is present.     

苏州河底泥对上复水水质污染影响

研究了上海市苏州河底泥中有机物及营养盐释放对上复水水质的影响,分析了微生物与底栖生物底泥再悬浮对底泥释放过程的影响。研究表明,底泥中化学需氧量与水体中的化学需氧量成正比,底泥中生化需氧量与水体中的生化需氧量呈正比,再悬浮促进底泥中污染物向上复水体释放。底泥SOD与水体中DO成正比,底泥污染是影响苏州河水质的重要因素;对苏州河底泥进行疏浚工程可较好地提高水体中溶解氧的浓度、降低化学需氧量、生化需氧量及氨氮的浓度。     

Causes of low oxygen in a lowland, regulated eutrophic river in Eastern England

In the River Brett, Eastern England, over the period 1955-1998 there was a significant long-term decline in dissolved oxygen (DO), as well as increases in TON (total oxidised nitrogen) and SRP (soluble reactive phosphorus). Flow decreased from 1963 to 1998. Field studies in 1998-2000 showed increased pH and a gradient of DO beneath the filamentous alga Cladophora glomerata. DO decreased through the summer. Macrophytes accounted for 45% of community respiration at the study site, while sediment accounted for 36%. In container studies, muddy sediments had the highest maximum sediment oxygen demand (SOD), but canopies of C. glomerata and Lemna minor together increased the SOD by up to 90% over control samples. During periods of high temperature, abundant growths of C. glomerata and/or L. minor would increase the SOD of organic mud in river areas with shallow, ponded water, eventually leading to anoxic conditions and the release of nutrients from the sediment. If a river had large areas of mud, these processes could dramatically affect the river's oxygen budget, and hence its ecology.     

Geochemistry of trace metals in a fresh water sediment: field results and diagenetic modeling

Concentrations of Fe, Mn, Cd, Co, Ni, Pb, and Zn were determined in pore water and sediment of a coastal fresh water lake (Haringvliet Lake, The Netherlands). Elevated sediment trace metal concentrations reflect anthropogenic inputs from the Rhine and Meuse Rivers. Pore water and sediment analyses, together with thermodynamic calculations, indicate a shift in trace metal speciation from oxide-bound to sulfide-bound over the upper 20 cm of the sediment. Concentrations of reducible Fe and Mn decline with increasing depth, but do not reach zero values at 20 cm depth. The reducible phases are relatively more important for the binding of Co, Ni, and Zn than for Pb and Cd. Pore waters exhibit supersaturation with respect to Zn, Pb, Co, and Cd monosulfides, while significant fractions of Ni and Co are bound to pyrite. A multi-component, diagenetic model developed for organic matter degradation was expanded to include Zn and Ni dynamics. Pore water transport of trace metals is primarily diffusive, with a lesser contribution of bioirrigation. Reactions affecting trace metal mobility near the sediment-water interface, especially sulfide oxidation and sorption to newly formed oxides, strongly influence the modeled estimates of the diffusive effluxes to the overlying water. Model results imply less efficient sediment retention of Ni than Zn. Sensitivity analyses show that increased bioturbation and sulfate availability, which are expected upon restoration of estuarine conditions in the lake, should increase the sulfide bound fractions of Zn and Ni in the sediments.     

Modelling coupled turbulence - Dissolved oxygen dynamics near the sediment-water interface under wind waves and sea swell

A one-dimensional vertical unsteady numerical model for diffusion-consumption of dissolved oxygen (DO) above and below the sediment-water interface was developed to investigate DO profile dynamics under wind waves and sea swell (high-frequency oscillatory flows with periods ranging from 2 to 30 s). We tested a new approach to modelling DO profiles that coupled an oscillatory turbulent bottom boundary layer model with a Michaelis-Menten based consumption model.The flow regime controls both the mean value and the fluctuations of the oxygen mass transfer efficiency during a wave cycle, as expressed by the non-dimensional Sherwood number defined with the maximum shear velocity (Sh). The Sherwood number was found to be non-dependent on the sediment biogeochemical activity (μ). In the laminar regime, both cycle-averaged and variance of the Sherwood number are very low . In the turbulent regime, the cycle-averaged Sherwood number is larger . The Sherwood number also has intra-wave cycle fluctuations that increase with the wave Reynolds number (VAR(Sh) up to 30%). Our computations show that DO mass transfer efficiency under high-frequency oscillatory flows in the turbulent regime are water-side controlled by: (a) the diffusion time across the diffusive boundary layer and (b) diffusive boundary layer dynamics during a wave cycle. As a result of these two processes, when the wave period decreases, the Sh minimum increases and the Sh maximum decreases. values vary little, ranging from 0.17 to 0.23. For periods up to 30 s, oxygen penetration depth into the sediment did not show any intra-wave fluctuations. Values for the laminar regime are small (≤1 mm for μ = 2000 g m⁻³ d⁻¹) and decrease when the flow period increases. In the turbulent regime, the oxygen penetration depth reaches values up to five times larger than those in the laminar regime, becoming asymptotic as the maximum shear velocity increases.     

Measurement of sediment oxygen demand for modelling dissolved oxygen distribution in tidal Keelung River

The Keelung River is one of the major branches of the Danshuei River estuarine system, which runs the metropolitan capital city of Taipei, Taiwan, and receives a large of amount of wastewater. The dissolved oxygen (DO) concentration is generally low in the tidal portion of the Keelung River. Hypoxia/anoxia occurs often, particularly during a low-flow period. The sediment oxygen demand (SOD) amounts to a significant value, hence increasing the total oxygen demand load of the river. The present work reports on laboratory SOD made on grab sediment core samples in situ that are undisturbed. The results reveal that SOD values fluctuate with variations in seasons and are higher in summer due to a high-temperature effect. It was found in the laboratory tests that the average SOD (at 20 °C) value is 0.76 g/m²/day and the maximum SOD (at 20 °C) value reaches 1.58 g/m²/day. The mean values of measured SOD at each station were adopted in the vertical two-dimensional water quality model to simulate the DO distribution along the tidal Keelung River. The simulated results are in reasonable agreement with the measured DO distribution in the river. Model sensitivity analyses were also conducted with increasing and decreasing SOD. It reveals that SOD is an important parameter that affects the DO distribution in the tidal estuary.     

High-resolution profiles of trace metals in the pore waters of riverine sediment assessed by DET and DGT

The techniques of DET (diffusive equilibrium in thin films) and DGT (diffusive gradients in thin films) were applied to obtain high-resolution vertical profiles of trace metals in freshwater sediments. In the framework of the EU-Interreg project Stardust (http://www.vliz.be/projects/stardust/) between France and Belgium, in which the mobility of sediment bound metals is investigated, sediment samples were collected from the Upper Scheldt River (at Helkijn, Belgium) and the Leie River (at Warneton, located at the Belgian-French border). Intra- and inter-laboratory comparisons of the gel techniques were carried out between the two laboratories involved. In general, a good agreement was observed, taking sediment heterogeneity into account. At both stations, metal pore water profiles show more or less similar tendencies although the sediment at Warneton was more anoxic than at Helkijn. A strong correlation between Fe and Co was found at Helkijn as well as at Warneton. The metal gradients at the water/sediment interface were calculated from the high resolution profiles and the conventional, low resolution profiles. Significant differences were observed.     

Phosphorus models for eutrophic lakes

A model is developed for a highly eutrophic lake (White Lake, Michigan) which incorporates both the water and sediment systems and considers two forms of phosphorus—particulate and dissolved. Dynamic interactions of phosphorus between sediments and water are quantified by taking account particulate phosphorus sinking to the sediment-water interface and diffusion of dissolved phosphorus across the interface. Other model mechanisms include vertical eddy diffusion in the water; phosphorus transformation between the particulate form and the dissolved form in both the water and the sediment, diffusion of phosphorus in the interstitial water, and sedimentation in the sediments.

Extensive field data have been used to determine the coefficients and parameters defined in the model formulations. Close agreement between the model calculations and the observed data is obtained, especially for the upper layers of the sediment. Sensitivity analysis for the model further substantiates the model calculations. It is found that two separate forms of phosphorus are necessary to gain detailed insight into the dynamics of phosphorus cycling in White Lake. The model also explains significant releases of phosphorus during anaerobic periods from the sediment to the hypolimnion of White Lake in summer. The general applicability of the model to lakes having different degrees of eutrophication must be determined by an examination and analysis of data from other systems.     

Modelling sediment-microbial dynamics in the South Nation River, Ontario, Canada: Towards the prediction of aquatic and human health risk

Runoff from agricultural watersheds can carry a number of agricultural pollutants and pathogens; often associated with the sediment fraction. Deposition of this sediment can impact water quality and the ecology of the river, and the re-suspension of such sediment can become sources of contamination for reaches downstream. In this paper a modelling framework to predict sediment and associated microbial erosion, transport and deposition is proposed for the South Nation River, Ontario, Canada. The modelling framework is based on empirical relationships (deposition and re-suspension fluxes), derived from laboratory experiments in a rotating circular flume using sediment collected from the river bed. The bed shear stress governing the deposition and re-suspension processes in the stream was predicted using a one dimensional mobile boundary flow model called MOBED. Counts of live bacteria associated with the suspended and bed sediments were used in conjunction with measured suspended sediment concentration at an upstream section to allow for the estimation of sediment associated microbial erosion, transport and deposition within the modelled river reach. Results suggest that the South Nation River is dominated by deposition periods with erosion only occurring at flows above approximately 250 m³ s⁻¹ (above this threshold, all sediment (suspended and eroded) with associated bacteria are transported through the modelled reach). As microbes are often associated with sediments, and can survive for extended periods of time, the river bed is shown to be a possible source of pathogenic organisms for erosion and transport downstream during large storm events. It is clear that, shear levels, bacteria concentrations and suspended sediment are interrelated requiring that these parameters be studied together in order to understand aquatic microbial dynamics. It is important that any management strategies and operational assessments for the protection of human and aquatic health incorporate the sediment compartments (suspended and bed sediment) and the energy dynamics within the system in order to better predict the concentration of indicator organism.     

Delay in lake recovery caused by internal loading

A simplified model of the lake-sediment system is proposed, which aims to predict the long term evolution and the recovery time of eutrophied lakes.The model represents the state of lake and sediment each by means of a single variable. Having recourse to a well-defined set of assumptions as for sediment processes, and adopting time independent coefficients, the model balance equations can be solved analytically, and the evolution of the state variables towards steady state conditions, can be discussed in terms of characteristic times of the considered system. Particular attention is devoted to the consequences of P saturation of the solid phase in surface sediment layers, i.e. to a situation which is frequently present in eutrophied lakes.The model is applied to the case of the highly eutrophied Lake Varese (Northern Italy), in which internal P loadings from sediments appear to be substantial.Taking into account the coupling between lake and sediments, the time needed to attain the steady state P concentration compatible with the present P loadings is evaluated as 5 times the water renewal time of the lake.It is also shown to what extent the assumptions on sediment dynamics affect the model predictions.     

Self-cleaning in an estuarine area formerly affected by 226Ra anthropogenic enhancements: numerical simulations

A numerical model of the Odiel-Tinto estuary (Spain) has been developed to study the self-cleaning process that was evidenced from 226Ra measurements in water and sediments collected in the period 1999-2002, after direct releases from a fertilizer complex ceased (in 1998). The hydrodynamic model is first calibrated, and standard tidal analysis is carried out to calculate tidal constants required by the dispersion code to determine instantaneous water currents and elevations over the estuary. In this way, long-term simulations may be carried out. The dispersion code includes advective/diffusive transport of radionuclides plus exchanges with bottom sediments described through a kinetic approach. The dispersion model is first tested by comparing computed and measured 226Ra concentrations over the estuary resulting after releases in the Odiel and Tinto rivers. Next, it is applied to simulate the self-cleaning process of the estuary. The time evolution of radium concentrations in bed sediments is in generally good agreement with observations. The computed sediment halving time of the estuary is 510 days, which also is in good agreement with that estimated from measurements.     

Effects of light and oxygen on the uptake and distribution of phosphorus at the sediment-water interface

Effects of oxygen and light on the uptake and distribution of phosphorus at the sediment-water interface were investigated in this study. The experimental water and sediment samples were collected from East Taihu Lake, China. The results show that phosphorus can be taken up from the overlying water to the sediments with high nutrient loading in both anoxic and aerobic conditions. The transformation between different phosphorus fractions in the sediments and in the overlying water was observed. Effects of dissolved oxygen on the phosphorus distribution at the sediment and overlying water interface were mainly due to the inorganic processes, while effects of light were mainly due to the biological activity. This study indicates that oxygen concentration had a predominant control on the distribution and uptake of phosphorus in the sediments, and light had obvious effect on the dissolved inorganic phosphorus (DIP) concentration in the overlying water.     

Numerical modelling of sediment-bacteria interaction processes in surface waters

Faecal bacteria exist in both free-living and attached forms in surface waters. The deposition of sediments can take faecal bacteria out of the water column and to the bed. The sediments can subsequently be re-suspended into the water column, which can then lead to the re-suspension of the faecal bacteria of the attached form back into the water column, where it may desorb from the sediments. Therefore, the fate and transport of faecal bacteria is highly related to the governing sediment transport processes, particularly where these processes are significant. However, little attempt has been made to model such processes in terms of predicting the impact of the sediment fluxes on faecal bacteria levels. Details are given of the refinement of a numerical model of faecal bacteria transport, where the sediment transport processes are significant. This model is based on the model DIVAST (Depth Integrated Velocities And Solute Transport). Analytical solutions for steady and uniform flow conditions were derived and used to test the sediment-bacteria interaction model. After testing the sediment-bacteria interaction model favourably against known results, the model was then set up for idealised case studies to investigate the effects of sediment on bacteria concentrations in the water column. Finally the model was applied to a simplified artificial flooding study to investigate the impact of suspended sediment fluxes on the corresponding bacteria transport processes. The model predictions have proved to be encouraging, with the results being compared to field measurements.     

Nitrogen gas supersaturation in the recent sediments of lake erie and two polluted harbors

Nitrogen gas distributions in sediment pore water were determined for cores collected in Lake Erie and two nearby harbors. Concentrations of N₂ gas ranged from 11.9 to 37.0 ml l⁻¹ and from 8.9 to 58.3 ml l⁻¹ for open lake and polluted harbor sediments, respectively. Maximum concentrations in the harbor sediments were as high as 3.5 times N₂ saturation calculated for the overlying water. Indirect diffusive flux estimates for nitrogen gas ranged from 20 to 32% of the particulate nitrogen sedimentation rate in Lake Erie. At one location, the amount of nitrogen gas lost by diffusion was calculated to be greater than the nitrogen deposited to the sediments. Nitrogen gas production and diffusive loss from surficial sediments probably represents a major pathway for nitrogen removal from Lake Erie.     

The variations of mercury in sediment profiles from a historically mercury-contaminated reservoir, Guizhou province, China

Baihua Reservoir in Guizhou Province, China, experienced serious Hg contamination from Guizhou Organic Chemical Plant (GOCP) between 1971 and 1997. However, the biogeochemical cycling of Hg in this reservoir is not well studied. Sediment cores were collected in fall 2002, spring 2003 and in spring and fall 2004. THg and MeHg concentrations in all sediment profiles ranged from 0.26 to 38.9 mg/kg and from 0.5 to 27.5 μg/kg (d.w.), respectively. The distribution of THg in sediment cores was characterized by a few peaks, which may correspond to the Hg-containing wastewater discharge history of the GOCP. The average THg concentrations in sediments cores decreased from upstream to downstream due to the deposition of particulate Hg, which is the major form of Hg in water. THg and MeHg concentrations in pore water varied from 6.1 to 5860 ng/L and from 0.3 to 15.4 ng/L, respectively, which were significantly higher than levels in the overlying water column. Average diffusive flux from sediment to water is 1642 and 36 ng/m²/day for THg and MeHg. The spatial distribution of THg in pore water from upstream to downstream showed the same trend as the sediment, but MeHg in pore water did not show a declining pattern with distance from the GOCP. These results suggested that sediments experienced serious contamination of Hg, and the contaminated sediment is an important Hg contamination source to the overlying water.     

The impact of hardpans and cemented layers on oxygen diffusivity in mining waste heaps: diffusion experiments and modelling studies

This study reports column tests and modelling results to assess the impact of hardpans and cemented layers on oxygen supply in mine waste sediments. The analysed sediment samples were obtained from a low-sulphide and low-carbonate polymetallic mine waste tailings impoundment located in the Freiberg mining district in Germany. The three samples were characterised by different degrees and types of cementation. After physical and mineralogical properties of the samples had been determined, breakthrough curves of oxygen were measured in column studies at different degrees of water saturation, and the diffusivities were assessed using a numerical modelling approach. Results demonstrate that cemented layers and hardpans in undisturbed sediments associated with fine-grained material operate as preferential pathways for diffusive gas transport during rewetting, leading to higher oxygen diffusivities compared to disturbed sediments. Under air-dry conditions, the disturbed samples show higher diffusivities than the undisturbed sample, indicating clogging of the porosity by precipitation of secondary minerals such as trivalent Fe oxyhydroxides acting as a barrier and thereby decreasing the diffusivity of the undisturbed sample. In contrast to sediments without cementation, diffusion experiments of sediments with cemented layers used in this study yield similar tortuosities in spite of their different grain size distributions, pointing to the important role of these heterogeneities for gas diffusion.     

城市河道底泥释磷的影响因素研究

自制模拟河道,取含磷的河道底泥进行试验,考察了温度、扰动、溶解氧等因素对河道底泥释磷的影响。结果表明,加大换水频率、缩短停留时间可以维持较好的水质,但并不能从根本上降低释磷量;溶解氧水平对底泥释磷的影响较大,低溶解氧水平(0.8 mg/L)下的释磷量是高溶解氧水平(7.2 mg/L)下的3.7倍;扰动(风)是影响底泥释磷的主要因素,有扰动时上覆水的TP浓度是无扰动时的4倍多;释磷强度会随温度的升高而明显增大,在静态条件下,水温为22℃时的TP浓度是8℃时的1.5倍。     

Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium

The presence and importance of microenvironments in the subsurface at contaminated sites were suggested by previous geochemical studies. However, no direct quantitative characterization of the geochemical microenvironments had been reported. We quantitatively characterized microscale geochemical gradients (dissolved oxygen (DO), H₂, pH, and redox potential) in Hanford 300A subsurface sediment biofilms. Our results revealed significant differences in geochemical parameters across the sediment biofilm/water interface in the presence and absence of U(VI) under oxic and anoxic conditions. While the pH was relatively constant within the sediment biofilm, the redox potential and the DO and H₂ concentrations were heterogeneous at the microscale (<500-1000 μm). We found microenvironments with high DO levels (DO hotspots) when the sediment biofilm was exposed to U(VI). On the other hand, we found hotspots (high concentrations) of H₂ under anoxic conditions both in the presence and in the absence of U(VI). The presence of anoxic microenvironments inside the sediment biofilms suggests that U(VI) reduction proceeds under bulk oxic conditions. To test this, we operated our biofilm reactor under air-saturated conditions in the presence of U(VI) and characterized U speciation in the sediment biofilm. U L_III-edge X-ray absorption spectroscopy (XANES and EXAFS) showed that 80-85% of the U was in the U(IV) valence state.