From Nerode’s congruence to suffix automata with mismatches

In this paper we focus on the minimal deterministic finite automaton _Sk$S_k$ that recognizes the set of suffixes of a word w$w$ up to k$k$ errors. As first result we give a characterization of the Nerode’s right-invariant congruence that is associated with _Sk$S_k$. This result generalizes the classical characterization described in [A. Blumer, J. Blumer, D. Haussler, A. Ehrenfeucht, M. Chen, J. Seiferas, The smallest automaton recognizing the subwords of a text, Theoretical Computer Science, 40, 1985, 31–55]. As second result we present an algorithm that makes use of _Sk$S_k$ to accept in an efficient way the language of all suffixes of w$w$ up to k$k$ errors in every window of size r$r$ of a text, where r$r$ is the repetition index of w$w$. Moreover, we give some experimental results on some well-known words, like prefixes of Fibonacci and Thue-Morse words. Finally, we state a conjecture and an open problem on the size and the construction of the suffix automaton with mismatches.     

Divergence bounded computable real numbers

A real x$x$ is called h$h$-bounded computable  , for some function h:N→N$h:\mathbb{N}\to \mathbb{N}$, if there is a computable sequence (_xs)$(x_s)$ of rational numbers which converges to x$x$ such that, for any n∈N$n\in \mathbb{N}$, at most h(n)$h(n)$ non-overlapping pairs of its members are separated by a distance larger than 2^-n$2^{-n}$. In this paper we discuss properties of h$h$-bounded computable reals for various functions h$h$. We will show a simple sufficient condition for a class of functions h$h$ such that the corresponding h$h$-bounded computable reals form an algebraic field. A hierarchy theorem for h$h$-bounded computable reals is also shown. Besides we compare semi-computability and weak computability with the h$h$-bounded computability for special functions h$h$.     

Transposition invariant words

We define an operation called transposition on words of fixed length. This operation arises naturally when the letters of a word are considered as entries of a matrix. Words that are invariant with respect to transposition are of special interest. It turns out that transposition invariant words have a simple interpretation by means of elementary group theory. This leads us to investigate some properties of the ring of integers modulo n$n$ and primitive roots. In particular, we show that there are infinitely many prime numbers p$p$ with a primitive root dividing p+1$p+1$ and infinitely many prime numbers p$p$ without a primitive root dividing p+1$p+1$. We also consider the orbit of a word under transposition.     

Extension of the decidability of the marked PCP to instances with unique blocks

In the Post Correspondence Problem (PCP) an instance (h,g)$(h,g)$ consists of two morphisms h$h$ and g$g$, and the problem is to determine whether or not there exists a nonempty word w$w$ such that h(w)=g(w)$h\left(w\right)=g\left(w\right)$. Here we prove that the PCP is decidable for instances with unique blocks using the decidability of the marked PCP. Also, we show that it is decidable whether an instance satisfying the uniqueness condition for continuations has an infinite solution. These results establish a new and larger class of decidable instances of the PCP, including the class of marked instances.     

Finite derivation type for Rees matrix semigroups

This paper introduces the topological finiteness condition finite derivation type   (FDT) on the class of semigroups. This notion is naturally extended from the monoid case. With this new concept we are able to prove that if a Rees matrix semigroup M[S;I,J;P]$M[S;I,J;P]$ has FDT then the semigroup S$S$ also has FDT. Given a monoid S$S$ and a finitely presented Rees matrix semigroup M[S;I,J;P]$M[S;I,J;P]$ we prove that if the ideal of S$S$ generated by the entries of P$P$ has FDT, then so does M[S;I,J;P]$M[S;I,J;P]$. In particular, we show that, for a finitely presented completely simple semigroup M$M$, the Rees matrix semigroup M=M[S;I,J;P]$M=M[S;I,J;P]$ has FDT if and only if the group S$S$ has FDT.     

Modeling and solving the rooted distance-constrained minimum spanning tree problem

In this paper we discuss models and methods for solving the rooted distance constrained minimum spanning tree problem which is defined as follows: given a graph G=(V,E)$G=(V,E)$ with node set V={0,1,…,n}$V=\{0,1,\dots ,n\}$ and edge set E$E$, two integer weights, a cost _ce$c_e$ and a delay _we$w_e$ associated with each edge e$e$ of E$E$, and a natural (time limit) number H$H$, we wish to find a spanning tree T$T$ of the graph with minimum total cost and such that the unique path from a specified root node, node 0, to any other node has total delay not greater than H$H$. This problem generalizes the well known hop-constrained spanning tree problem and arises in the design of centralized networks with quality of service constraints and also in package shipment with service guarantee constraints. We present three theoretically equivalent modeling approaches, a column generation scheme, a Lagrangian relaxation combined with subgradient optimization procedure, both based on a path formulation of the problem, and a shortest path (compact) reformulation of the problem which views the underlying subproblem as defined in a layered extended graph. We present results for complete graph instances with up to 40 nodes. Our results indicate that the layered graph path reformulation model is still quite good when the arc weights are reasonably small. Lagrangian relaxation combined with subgradient optimization procedure appears to work much better than column generation and seems to be a quite reasonable approach to the problem for large weight, and even small weight, instances.     

The cell probe complexity of succinct data structures

We consider time-space tradeoffs for static data structure problems in the cell probe model with word size 1 (the bit probe model). In this model, the goal is to represent n$n$-bit data with s=n+r$s=n+r$ bits such that queries (of a certain type) about the data can be answered by reading at most t$t$ bits of the representation. Ideally, we would like to keep both s$s$ and t$t$ small, but there are tradeoffs between the values of s$s$ and t$t$ that limit the possibilities of keeping both parameters small.     

General suffix automaton construction algorithm and space bounds

Suffix automata and factor automata are efficient data structures for representing the full index of a set of strings. They are minimal deterministic automata representing the set of all suffixes or substrings of a set of strings. This paper presents a novel analysis of the size of the suffix automaton or factor automaton of a set of strings. It shows that the suffix automaton or factor automaton of a set of strings U$U$ has at most 2Q−2$2Q-2$ states, where Q$Q$ is the number of nodes of a prefix-tree representing the strings in U$U$. This bound significantly improves over 2‖U‖−1$2\Vert U\Vert -1$, the bound given by Blumer et al. [A. Blumer, J. Blumer, D. Haussler, R.M. McConnell, A. Ehrenfeucht, Complete inverted files for efficient text retrieval and analysis, Journal of the ACM 34 (1987) 578–589], where ‖U‖$\Vert U\Vert$ is the sum of the lengths of all strings in U$U$. More generally, we give novel and general bounds for the size of the suffix or factor automaton of an automaton as a function of the size of the original automaton and the maximal length of a suffix shared by the strings it accepts. We also describe in detail a linear-time algorithm for constructing the suffix automaton S$S$ or factor automaton F$F$ of U$U$ in time O(|S|)$O\left(\left|S\right|\right)$. Our algorithm applies in fact to any input suffix-unique automaton and strictly generalizes the standard on-line construction of a suffix automaton for a single input string. Our algorithm can also be used straightforwardly to generate the suffix oracle or factor oracle of a set of strings, which has been shown to have various useful properties in string-matching. Our analysis suggests that the use of factor automata of automata can be practical for large-scale applications, a fact that is further supported by the results of our experiments applying factor automata to a music identification task with more than 15,000 songs.     

On Hoffman's celebrated cycling LP example

We answer two questions that naturally arise while dealing with Hoffman's celebrated 50-year-old linear program to be solved by the primal simplex method, where an angle θ$\theta$ and a scaling factor ω$\omega$ are adjustable parameters. In particular, we determine what conditions have to be imposed on ω$\omega$ for classical cycling to occur with θ=2π/5$\theta =2\pi /5$, and what on θ$\theta$ with ω=±tan(θ)$\omega =\pm \tan (\theta )$. The first answer reveals that the sufficient condition widely spread over the literature is false, so fixing it turns this example into a correct example of classical cycling. Some progress towards necessary and sufficient conditions for cycling to occur in this example is also reported.     

Algorithms for near solutions to polynomial equations

Let F(x,y)$F(x,y)$ be a polynomial over a field K$K$ and m$m$ a nonnegative integer. We call a polynomial g$g$ over K$K$ an m$m$-near solution of F(x,y)$F(x,y)$ if there exists a c∈K$c\in K$ such that F(x,g)=cx^m$F(x,g)=c{x}^m$, and the number c$c$ is called an m$m$-value of F(x,y)$F(x,y)$ corresponding to g$g$. In particular, c$c$ can be 0. Hence, by viewing F(x,y)=0$F(x,y)=0$ as a polynomial equation over K[x]$K\left[x\right]$ with variable y$y$, every solution of the equation F(x,y)=0$F(x,y)=0$ in K[x]$K\left[x\right]$ is also an m$m$-near solution. We provide an algorithm that gives all m$m$-near solutions of a given polynomial F(x,y)$F(x,y)$ over K$K$, and this algorithm is polynomial time reducible to solving one variable equations over K$K$. We introduce approximate solutions to analyze the algorithm. We also give some interesting properties of approximate solutions.     

A concurrent lambda calculus with futures

We introduce a new lambda calculus with futures, λ(fut)$\lambda (\mathsf{fut})$, that models the operational semantics of concurrent statically typed functional programming languages with mixed eager and lazy threads such as Alice ML, a concurrent extension of Standard ML. λ(fut)$\lambda (\mathsf{fut})$ is a minimalist extension of the call-by-value λ$\lambda$-calculus that is sufficiently expressive to define and combine a variety of standard concurrency abstractions, such as channels, semaphores, and ports. Despite its minimality, the basic machinery of λ(fut)$\lambda (\mathsf{fut})$ is sufficiently powerful to support explicit recursion and call-by-need evaluation.     

Non-reducible descriptions for conditional Kolmogorov complexity

Assume that a program p$p$ on input a$a$ outputs b$b$. We are looking for a shorter program q$q$ having the same property (q(a)=b$q\left(a\right)=b$). In addition, we want q$q$ to be simple conditional to p$p$ (this means that the conditional Kolmogorov complexity K(q|p)$K\left(q\right|p)$ is negligible). In the present paper, we prove that sometimes there is no such program q$q$, even in the case when the complexity of p$p$ is much bigger than K(b|a)$K\left(b\right|a)$. We give three different constructions that use the game approach, probabilistic arguments and algebraic arguments, respectively.     

On decidability properties of local sentences

Local (first order) sentences, introduced by Ressayre, enjoy very nice decidability properties, following from some stretching theorems stating some remarkable links between the finite and the infinite model theory of these sentences [J.-P. Ressayre, Formal languages defined by the underlying structure of their words, J. Symbolic Logic 53 (4) (1988) 1009–1026]. Another stretching theorem of Finkel and Ressayre implies that one can decide, for a given local sentence ?$?$ and an ordinal α<ω^ω$\alpha <{\omega }^{\omega }$, whether ?$?$ has a model of order type α$\alpha$. This result is very similar to Büchi's one who proved that the monadic second order theory of the structure (α,<)$(\alpha ,<)$, for a countable ordinal α$\alpha$, is decidable. It is in fact an extension of that result, as shown in [O. Finkel, finite languages, Theoret. Comput. Sci. 255 (1–2) (2001) 223–261] by considering the expressive power of monadic sentences and of local sentences over languages of words of length α$\alpha$. The aim of this paper is twofold. We wish first to attract the reader's attention on these powerful decidability results proved using methods of model theory and which should find some applications in computer science and we prove also here several additional results on local sentences.     

Origami fold as algebraic graph rewriting

We formalize paper fold (origami) by graph rewriting. Origami construction is abstractly described by a rewriting system (O,?)$(\mathbb{O},?)$, where O$\mathbb{O}$ is the set of abstract origamis and ?$?$ is a binary relation on O$\mathbb{O}$, that models fold  . An abstract origami is a structure (Π,∽,?)$(\Pi ,\backsim ,?)$, where Π$\Pi$ is a set of faces constituting an origami, and ∽$\backsim$ and ?$?$ are binary relations on Π$\Pi$, each representing adjacency and superposition relations between the faces.     

Fast algorithms for some dominating induced matching problems

We describe O(n)$O(n)$ time algorithms for finding the minimum weighted dominating induced matching of chordal, dually chordal, biconvex, and claw-free graphs. For the first three classes, we prove tight O(n)$O(n)$ bounds on the maximum number of edges that a graph having a dominating induced matching may contain. By applying these bounds, and employing existing O(n+m)$O(n+m)$ time algorithms we show that they can be reduced to O(n)$O(n)$ time. For claw-free graphs, we describe a variation of the existing algorithm for solving the unweighted version of the problem, which decreases its complexity from O(n²)$O(n^2)$ to O(n)$O(n)$, while additionally solving the weighted version. The same algorithm can be easily modified to count the number of DIM's of the given graph.     

Simplifying the weft hierarchy

We give simple, self-contained proofs of the basic hardness results for the classes W[t]$W[t]$ of the weft hierarchy. We extend these proofs to higher levels of the hierarchy and illuminate the distinctions among its classes. The anti-monotone collapse at W[1,s]$W[1,s]$ and the normalization of weft-t$t$ formulas arise as by-products of the proofs.     

Paths and trails in edge-colored graphs

This paper deals with the existence and search for properly edge-colored paths/trails between two, not necessarily distinct, vertices s$s$ and t$t$ in an edge-colored graph from an algorithmic perspective. First we show that several versions of the s−t$s-t$ path/trail problem have polynomial solutions including the shortest path/trail case. We give polynomial algorithms for finding a longest properly edge-colored path/trail between s$s$ and t$t$ for a particular class of graphs and characterize edge-colored graphs without properly edge-colored closed trails. Next, we prove that deciding whether there exist k$k$ pairwise vertex/edge disjoint properly edge-colored s−t$s-t$ paths/trails in a c$c$-edge-colored graph G^c$G^c$ is NP-complete even for k=2$k=2$ and c=Ω(n²)$c=\Omega \left(n^2\right)$, where n$n$ denotes the number of vertices in G^c$G^c$. Moreover, we prove that these problems remain NP-complete for c$c$-edge-colored graphs containing no properly edge-colored cycles and c=Ω(n)$c=\Omega \left(n\right)$. We obtain some approximation results for those maximization problems together with polynomial results for some particular classes of edge-colored graphs.