CNLs for the semantic web: a state of the art

One of the core challenges for building the semantic web is the creation of ontologies, a process known as ontology authoring. Controlled natural languages (CNLs) propose different frameworks for interfacing and creating ontologies in semantic web systems using restricted natural language. However, in order to engage non-expert users with no background in knowledge engineering, these language interfacing must be reliable, easy to understand and accepted by users. This paper includes the state-of-the-art for CNLs in terms of ontology authoring and the semantic web. In addition, it includes a detailed analysis of user evaluations with respect to each CNL and offers analytic conclusions with respect to the field.     

OntoTrack: A semantic approach for ontology authoring

OntoTrackis an ontology authoring tool that combines a graph-based hierarchical layout and instant reasoning feedback within one single view. Currently OntoTrack can handle ontologies with an expressivity almost comparable to OWL Lite. The graphical representation provides an animated and zoomable subsumption graph with context sensitive features such as click-able miniature branches or selective detail views, together with drag-and-drop editing. Each editing step is instantly synchronised with an external reasoner in order to provide appropriate graphical feedback about relevant modeling consequences. A recent extention of OntoTrack provides an on-demand textual explanation for subsumption relationships between classes. This paper describes the key features of the current implementation and discusses future work, as well as some development issues. OntoTrack can be downloaded at http://www.informatik.uni-ulm.de/ki/ontotrack/.     

A comprehensive framework for the evaluation of ontology modularization

The Semantic Web and ontologies have received increased attention in recent years. The delivery of well-designed ontologies enhances the effect of Semantic Web services, but building ontologies from scratch requires considerable time and effort. Modularizing ontologies and integrating ontology modules to a given context help users effectively develop ontologies and revitalize ontology dissemination. Therefore, various tools for modularizing ontologies have been developed. However, selecting an appropriate tool to fit a given context is difficult because the assumptions for the approaches greatly vary. Therefore, a suitable framework is required to compare and help screen the most suitable modularization tool.In this research, we propose a new evaluation framework for selecting an appropriate ontology modularization tool. We present three aspects of tool evaluation as the main dimensions for the assessment of modularization tools: tool performance, data performance, and usability.This study provides an implicit evaluation and an empirical analysis of three modularization tools. It also provides an evaluation method for ontology modularization, enabling ontology engineers to compare different modularization tools and easily choose an appropriate one for the production of qualifying ontology modules.The experimental results indicate that the proposed evaluation criteria for ontology modularization tools are valid and effective. This research provides a useful method for assessing and selecting ontology modularization tools. Modularization performance, data performance, and usability are the three modularization aspects designed and applied to the context of ontology. We provide a new focus on the comprehensive framework to evaluate the performance and usability of ontology modularization tools. The proposed framework should be of value to both ontology engineers, who are interested in ontology modularization, and to practitioners, who need information on how to evaluate and select a specific type of ontology tool in accordance with the requirements of the individual environment.     

Automatic extraction of OWL ontologies from UML class diagrams: a semantics-preserving approach

Full implementation of the Semantic Web requires widespread availability of OWL ontologies. Manual ontology development using current OWL editors remains a tedious and cumbersome task that requires significant understanding of the new ontology language and can easily result in a knowledge acquisition bottleneck. On the other hand, abundant domain knowledge has been specified by existing database schemata such as UML class diagrams. Thus developing an automatic tool for extracting OWL ontologies from existing UML class diagrams is helpful to Web ontology development. In this paper we propose an automatic, semantics-preserving approach for extracting OWL ontologies from existing UML class diagrams. This approach establishes a precise conceptual correspondence between UML and OWL through a semantics-preserving schema translation algorithm. The experiments with our implemented prototype tool, UML2OWL, show that the proposed approach is effective and a fully automatic ontology extraction is achievable. The proposed approach and tool will facilitate the development of Web ontologies and the realization of semantic interoperations between existing Web database applications and the Semantic Web.     

Ontologies: How can They be Built?

Ontologies are an important component in many areas, such as knowledge management and organization, electronic commerce and information retrieval and extraction. Several methodologies for ontology building have been proposed. In this article, we provide an overview of ontology building. We start by characterizing the ontology building process and its life cycle. We present the most representative methodologies for building ontologies from scratch, and the proposed techniques, guidelines and methods to help in the construction task. We analyze and compare these methodologies. We describe current research issues in ontology reuse. Finally, we discuss the current trends in ontology building and its future challenges, namely, the new issues for building ontologies for the Semantic Web.     

一种本体编辑及可视化工具

随着本体的广泛应用,构建实用本体的重要性愈加突出。在中文领域,支持中文的本体构建工具不够完善,迫切需要高效、符合中文习惯的本体开发工具。利用protégé-owl API对本体进行底层操作,利用Prefuse库实现可视化,采用MVC框架开发了一款中文本体编辑及可视化工具。实验表明,该软件能够有效地对中文本体进行编辑和可视化,为中文本体的构建者提供了更加适合中文的本体构建平台。     

Ontology versioning in an ontology management framework

Ontologies have become ubiquitous in information systems. They constitute the semantic Web's backbone, facilitate e-commerce, and serve such diverse application fields as bioinformatics and medicine. As ontology development becomes increasingly widespread and collaborative, developers are creating ontologies using different tools and different languages. These ontologies cover unrelated or overlapping domains at different levels of detail and granularity. A uniform framework, which we present here, helps users manage multiple ontologies by leveraging data and algorithms developed for one tool in another. For example, by using an algorithm we developed for structural evaluation of ontology versions, this framework lets developers compare different ontologies and map similarities and differences among them. Multiple-ontology management includes these tasks: maintain ontology libraries, import and reuse ontologies, translate ontologies from one formalism to another, support ontology versioning, specify transformation rules between different ontologies and version, merge ontologies, align and map between ontologies, extract an ontology's self-contained parts, support inference across multiple ontologies, support query across multiple ontologies.     

Onyx: A new Canvas-based tool for visualizing biomedical and health ontologies

Ontologies provide formal, machine-readable, and human-interpretable representations of domain knowledge. Therefore, ontologies have come into question with the development of Semantic Web technologies. People who want to use ontologies need an understanding of the ontology, but this understanding is very difficult to attain if the ontology user lacks the background knowledge necessary to comprehend the ontology or if the ontology is very large. Thus, software tools that facilitate the understanding of ontologies are needed. Ontology visualization is an important research area because visualization can help in the development, exploration, verification, and comprehension of ontologies. This paper introduces the design of a new ontology visualization tool, which differs from traditional visualization tools by providing important metrics and analytics about ontology concepts and warning the ontology developer about potential ontology design errors. The tool, called Onyx, also has advantages in terms of speed and readability. Thus, Onyx offers a suitable environment for the representation of large ontologies, especially those used in biomedical and health information systems and those that contain many terms. It is clear that these additional functionalities will increase the value of traditional ontology visualization tools during ontology exploration and evaluation.     

Survey of modular ontology techniques and their applications in the biomedical domain

In the past several years, various ontologies and terminologies such as the Gene Ontology have been developed to enable interoperability across multiple diverse medical information systems. They provide a standard way of representing terms and concepts thereby supporting easy transmission and interpretation of data for various applications. However, with their growing utilization, not only has the number of available ontologies increased considerably, but they are also becoming larger and more complex to manage. Toward this end, a growing body of work is emerging in the area of modular ontologies where the emphasis is on either extracting and managing "modules" of an ontology relevant to a particular application scenario (ontology decomposition) or developing them independently and integrating into a larger ontology (ontology composition). In this paper, we investigate state-of-the-art approaches in modular ontologies focusing on techniques that are based on rigorous logical formalisms as well as well-studied graph theories. We analyze and compare how such approaches can be leveraged in developing tools and applications in the biomedical domain. We conclude by highlighting some of the limitations of the modular ontology formalisms and put forward additional requirements to steer their future development.     

Integrated approach to Web ontology learning and engineering

Developing the Semantic Web, seeking to improve the semantic awareness of computers connected via the Internet, requires a systematic, computer-oriented world representation. Researchers often refer to such a model as an ontology. Despite the work done on them in recent years, ontologies have yet to be widely applied and used. Research has devoted only limited attention to such practical issues as techniques and tools aimed at an ontology's actual construction and content. The authors have built a software environment, centered around the OntoLearn tool, which can build and assess a domain ontology for intelligent information integration within a virtual user community. OntoLearn has already been tested in two European projects, where it functioned as the basis for a semantic interoperability platform used by small- and medium-sized tourism enterprises. Further, developers can easily adapt OntoLearn to work with other general-purpose ontologies.     

Tutorial on ontological engineering Part 2: Ontology development,tools and languages

Practical aspects of ontological engineering are discussed in this part. First topic is the methodology of ontology development. Next, ontology representation languages and support tools are discussed as well as ontology alignment and merging which are becoming practically important to cope with distributed development of ontologies. We next discuss several ontologies developed thus far including large-scale knowledge bases such as Cyc, practical domain ontologies such as Enterprise ontology and gene ontology and generic ontologies such as PSL: Process Specification Language and SUO: Standard Upper Ontology. The first topic of ontology applications is the semantic web in which semantic interoperability, metadata and web service ontology are described. e-Learning is also a good application area of ontology in which LOM: Learning Object Metadata and ontology-aware authoring systems are discussed followed by conclusion. Riichiro Mizoguchi, Ph.D.: He is Professor of the Department of Knowledge Systems, the Institute of Scientific and Industrial Research, Osaka University. He received his B.S., M.S., and Ph.D. degrees from Osaka University in 1972, 1974 and 1977 respectively. From 1978 to 1986 he was research associate in the Institute of Scientific and Industrial Research, Osaka University. From 1986 to 1989 he was Associate Professor there. His research interests include Non-parametric data analyses, Knowledge-based systems, Ontological engineering and Intelligent learning support systems. He is a member of the Japanese Society for Artificial Intelligence, the Institute of Electronics, Information and Communica-tion Engineers, the Information Processing Society of Japan, the Japanese Society for Information and Systems in Education, Intl. AI in Education (IAIED) Soc., AAAI, IEEE and APC of AACE. Currently, he is President of IAIED Soc. and APC of AACE. He received honorable mention for the Pattern Recognition Society Award, the Institute of Electronics, Information and Communication Engineers Award, 10th Anniversary Paper Award from the Japanese Society for Artificial Intelligence and Best paper Award of ICCE99 in 1985, 1988, 1996 and 1999, respectively. He can be reached at miz@ei.sanken.osaka-u.ac.jp     

Ontology learning for the Semantic Web

The Semantic Web relies heavily on formal ontologies to structure data for comprehensive and transportable machine understanding. Thus, the proliferation of ontologies factors largely in the Semantic Web's success. The authors present an ontology learning framework that extends typical ontology engineering environments by using semiautomatic ontology construction tools. The framework encompasses ontology import, extraction, pruning, refinement and evaluation.     

Evaluation of the OQuaRE framework for ontology quality

The increasing importance of ontologies has resulted in the development of a large number of ontologies in both coordinated and non-coordinated efforts. The number and complexity of such ontologies make hard to ontology and tool developers to select which ontologies to use and reuse. So far, there are no mechanism for making such decisions in an informed manner. Consequently, methods for evaluating ontology quality are required. OQuaRE is a method for ontology quality evaluation which adapts the SQuaRE standard for software product quality to ontologies. OQuaRE has been applied to identify the strengths and weaknesses of different ontologies but, so far, this framework has not been evaluated itself. Therefore, in this paper we present the evaluation of OQuaRE, performed by an international panel of experts in ontology engineering. The results include the positive and negative aspects of the current version of OQuaRE, the completeness and utility of the quality metrics included in OQuaRE and the comparison between the results of the manual evaluations done by the experts and the ones obtained by a software implementation of OQuaRE.     

Trust‐annotated ontology integration using social modelling*

Abstract: As ontologies become more prevalent for information management the need to manage the ontologies increases. Multiple organizations, within a domain, often combine to work on specific projects. When separate organizations come together to communicate, an alignment of terminology and semantics is required. Ontology creation is often privatized for these individual organizations to represent their view of the domain. This creates problems with alignment and integration, making it necessary to consider how much each ontology should influence the current decision to be made. To assist with determining influence a trust‐based approach on authors and their ontologies provides a mechanism for ranking reasoning results. A representation of authors and the individual resources they provide for the merged ontology becomes necessary. The authors are then weighted by trust and trust for the resources they provide the ontology is calculated. This is then used to assist the integration process allowing for an evolutionary trust model to calculate the level of credibility of resources. Once the integration is complete semantic agreement between ontologies allows for the revision of the authors' trust.     

The PROMPT suite: interactive tools for ontology merging and mapping

Researchers in the ontology-design field have developed the content for ontologies in many domain areas. This distributed nature of ontology development has led to a large number of ontologies covering overlapping domains. In order for these ontologies to be reused, they first need to be merged or aligned to one another. We developed a suite of tools for managing multiple ontologies. These suite provides users with a uniform framework for comparing, aligning, and merging ontologies, maintaining versions, translating between different formalisms. Two of the tools in the suite support semi-automatic ontology merging: P is an interactive ontology-merging tool that guides the user through the merging process, presenting him with suggestions for next steps and identifying inconsistencies and potential problems. A P uses a graph structure of ontologies to find correlation between concepts and to provide additional information for P .     

语义Web中的本体匹配研究

随着本体应用的快速发展,本体数量大幅增长,这些本体描述的内容存在重复和关联,但在本体模式上却表现各异。本体匹配旨在识别异构本体中存在语义关联的实体,并建立它们之间匹配关系。它对于消除本体异构、实现本体集成和数据融合等具有重要作用。形式化定义了语义Web中的本体匹配问题,并从本体匹配方法、本体匹配挑战和本体匹配原型系统3个方面调研了最新研究进展,旨在为进一步研究指明方向。     

ANEMONE: An environment for modular ontology development

Many real-world ontologies contain thousands of terms and are developed by multiple participants. The use of monolithic ontologies can cause problems that affect various stages of the ontology life cycle. Thus, there is an urgent need for tools and methodologies that facilitate modular ontology design. The benefits of a modular approach include division of labor, scalability, partial reuse, and broadened participation. This article presents a methodology for modular ontology development. The main idea is to facilitate an interoperable hierarchical network of ontology modules. Modules are designed as a combination of more abstract modules in higher levels of the hierarchy. This methodology differs from previous methodologies in the way that it defines concrete development steps, to facilitate use by both naive and expert ontology developers. This methodology is also supported by ontology design patterns and a prototypical ontology development tool.     

A semantic similarity method based on information content exploiting multiple ontologies

The quantification of the semantic similarity between terms is an important research area that configures a valuable tool for text understanding. Among the different paradigms used by related works to compute semantic similarity, in recent years, information theoretic approaches have shown promising results by computing the information content (IC) of concepts from the knowledge provided by ontologies. These approaches, however, are hampered by the coverage offered by the single input ontology. In this paper, we propose extending IC-based similarity measures by considering multiple ontologies in an integrated way. Several strategies are proposed according to which ontology the evaluated terms belong. Our proposal has been evaluated by means of a widely used benchmark of medical terms and MeSH and SNOMED CT as ontologies. Results show an improvement in the similarity assessment accuracy when multiple ontologies are considered.     

A methodology for the semi-automatic creation of data-driven detailed business ontologies

In the context of technological expansion and development, companies feel the need to renew and optimize their information systems as they search for the best way to manage knowledge. Business ontologies within the semantic web are an excellent tool for managing knowledge within this space. The proposal in this article consists of a methodology for integrating information in companies. The application of this methodology results in the creation of a specific business ontology capable of semantic interoperability. The resulting ontology, developed from the information system of specific companies, represents the fundamental business concepts, thus making it a highly appropriate information integration tool. Its level of semantic expressivity improves on that of its own sources, and its solidity and consistency are guaranteed by means of checking by current reasoning tools. An ontology created in this way could drive the renewal processes of companies’ information systems. A comparison is also made with a number of well-known business ontologies, and similarities and differences are drawn, highlighting the difficulty in aligning general ontologies to specific ones, such as the one we present.     

Enabling Cross-Disciplinary E-Science by Integrating Geoscience Ontologies with Dolce

E-Science is increasingly being used to address scientific problems that require cross-disciplinary knowledge, such as climate change, natural disasters, and environmental health. However, the ontologies used to represent scientific knowledge are largely unidisciplinary and need to be integrated to enable big e-Science. The authors investigate the potential of the Dolce foundational ontology to aid the integration of two geoscientific knowledge representations, the Sweet ontology and the GeoSciML schema, to meet the requirements of a cross-disciplinary use case focused on groundwater pollution estimation. They connected the domain ontologies via the foundational ontology, leading to new and improved relations between the domain ontologies that enabled satisfaction of the use case. Although the integrated ontology, called Dolce Rocks, contains some semantic inconsistencies resulting from incompatibilities among the ontologies, the overall results suggest that foundational ontologies can play an important role in cross-disciplinary e-Science.