Microbial reduction of Fe(III) and sorption/precipitation of Fe(II) on Shewanella putrefaciens strain CN32

The influence of Fe(II) on the dissimilatory bacterial reduction of an Fe(III) aqueous complex (Fe(III)-citrate(aq)) was investigated using Shewanella putrefaciens strain CN32. The sorption of Fe(II) on CN32 followed a Langmuir isotherm. Least-squares fitting gave a maximum sorption capacity of Qmax = 4.19 x 10(-3) mol/10(12) cells (1.19 mmol/m2 of cell surface area) and an affinity coefficient of log K = 3.29. The growth yield of CN32 with respect to Fe(III)aq reduction showed a linear trend with an average value of 5.24 (+/-0.12) x 10(9) cells/mmol of Fe(III). The reduction of Fe(III)aq by CN32 was described by Monod kinetics with respect to the electron acceptor concentration, Fe(III)aq, with a half-saturation constant (Ks) of 29 (+/-3) mM and maximum growth rate (micromax) of 0.32 (+/-0.02) h(-1). However, the pretreatment of CN32 with Fe(II)aq significantly inhibited the reduction of Fe(III)aq, resulting in a lag phase of about 3-30 h depending on initial cell concentrations. Lower initial cell concentration led to longer lag phase duration, and higher cell concentration led to a shorter one. Transmission electron microscopy and energy dispersive spectroscopy revealed that many cells carried surface precipitates of Fe mineral phases (valence unspecified) during the lag phase. These precipitates disappeared after the cells recovered from the lag phase. The cell inhibition and recovery mechanisms from Fe(II)-induced mineral precipitation were not identified by this study, but several alternatives were discussed. A modified Monod model incorporating a lag phase, Fe(II) adsorption, and aqueous complexation reactions was able to describe the experimental results of microbial Fe(III)aq reduction and cell growth when cells were pretreated with Fe(II)aq.     

EXAFS analysis of arsenite adsorption onto two-line ferrihydrite, hematite, goethite, and lepidocrocite

The modes of As(III) sorption onto two-line ferrihydrite (Fh), hematite (Hm), goethite (Gt), and lepidocrocite (Lp) have been investigated under anoxic condition using X-ray absorption spectroscopy (XAS). X-ray absorption near-edge structure spectroscopy (XANES) indicates that the absence of oxygen minimized As(III) oxidation due to Fenton reactions. Extended X-ray absorption fine structure spectroscopy (EXAFS) indicates thatAs(III)forms similar inner-sphere surface complexes on two-line ferrihydrite and hematite that differ from those formed on goethite and lepidocrocite. At high surface coverage, the dominant complex types on Fh and Hm are bidentate mononuclear edge-sharing (2E) and bidentate binuclear corner-sharing (2C), with As-Fe distances of 2.90 +/- 0.05 and 3.35 +/- 0.05 A, respectively. The same surface complexes are observed for ferrihydrite at low surface coverage. In contrast, As(III) forms dominantly bidentate binuclear corner-sharing (2C) sorption complexes on Gt and Lp [d(As-Fe) = 3.3-3.4 A], with a minor amount of monodentate mononuclear corner-sharing (1V) complexes [d(As-Fe) = 3.5-3.6 A]. Bidentate mononuclear edge-sharing (2E) complexes are virtually absent in Gt and Lp at the high surface coverages that were investigated in the present study. These results are compared with available literature data and discussed in terms of the reactivity of iron(III) (oxyhydr)oxide surface sites.     

Impacts of Shewanella putrefaciens strain CN-32 cells and extracellular polymeric substances on the sorption of As(V) and As(III) on Fe(III)-(hydr)oxides

We investigated the effects of Shewanella putrefaciens cells and extracellular polymeric substances on the sorption of As(III) and As(V) to goethite, ferrihydrite, and hematite at pH 7.0. Adsorption of As(III) and As(V) at solution concentrations between 0.001 and 20 μM decreased by 10 to 45% in the presence of 0.3 g L(-1) EPS, with As(III) being affected more strongly than As(V). Also, inactivated Shewanella cells induced desorption of As(V) from the Fe(III)-(hydr)oxide mineral surfaces. ATR-FTIR studies of ternary As(V)-Shewanella-hematite systems indicated As(V) desorption concurrent with attachment of bacterial cells at the hematite surface, and showed evidence of inner-sphere coordination of bacterial phosphate and carboxylate groups at hematite surface sites. Competition between As(V) and bacterial phosphate and carboxylate groups for Fe(III)-(oxyhydr)oxide surface sites is proposed as an important factor leading to increased solubility of As(V). The results from this study have implications for the solubility of As(V) in the soil rhizosphere and in geochemical systems undergoing microbially mediated reduction and indicate that the presence of sorbed oxyanions may affect Fe-reduction and biofilm development at mineral surfaces.     

Effect of natural organic matter on zinc inhibition of hematite bioreduction by Shewanella putrefaciens CN32

The effect of zinc on the biological reduction of hematite (alpha-Fe2O3) by the dissimilatory metal-reducing bacterium (DMRB) Shewanella putrefaciens CN32 was studied in the presence of four natural organic materials (NOMs). Experiments were performed under non-growth conditions with H2 as the electron donor and zinc inhibition was quantified as the decrease in the 5 d extent of hematite bioreduction as compared to no-zinc controls. Every NOM was shown to significantly increase zinc inhibition during hematite bioreduction. NOMs were shown to alter the distribution of both biogenic Fe(II) and Zn(II) between partitioned (hematite and cell surfaces) and solution phases. To further evaluate the mechanism(s) of NOM-promoted zinc inhibition, similar bioreduction experiments were conducted with nitrate as a soluble electron acceptor, and hematite bioreduction experiments were conducted with manganese which was essentially non-inhibitory in the absence of NOM. The results suggest that Me(II)-NOM complexes may be specifically inhibitory during solid-phase bioreduction via interference of DMRB attachment to hematite through the formation of ternary Me(II)-NOM-hematite complexes.     

Effects of electron transfer mediators on the bioreduction of lepidocrocite (gamma-FeOOH) by Shewanella putrefaciens CN32

Electron transfer mediators (ETMs) such as low-molecular-mass quinones (e.g., juglone and lawsone) and humic substances are believed to play a role in many redox reactions involved in contaminant transformations and the biogeochemical cycling of many redox-active elements (e.g., Fe and Mn) in aquatic and terrestrial environments. This study examines the effects of a series of compounds representing major classes of natural and synthetic organic ETMs, including low-molecular-mass quinones, humic substances, phenazines, phenoxazines, phenothiazines, and indigo derivatives, on the bioreduction of lepidocrocite (gamma-FeOOH) by the dissimilatory Fe(III)-reducing bacterium Shewanella putrefaciens CN32. Although S. putrefaciens CN32 was able to reduce lepidocrocite in the absence of exogenous ETMs, the addition of exogenous ETMs enhanced the bioreduction of lepidocrocite. In general, the rate of Fe(II) production correlated well with the reduction potentials of the ETMs. The addition of humic acids or unfractionated natural organic matter at concentrations of 10 mg organic CL(-1) resulted in, at best, a minimal enhancement of lepidocrocite bioreduction. This observation suggests that electron shuttling by humic substances is not likely to play a major role in Fe(lll) bioreduction in oligotrophic environments such as subsurface sediments with low organic C contents.     

Effects of Fe(III) chemical speciation on dissimilatory Fe(III) reduction by Shewanella putrefaciens

Shewanella putrefaciens, a heterotrophic member of the gamma-proteobacteria is capable of respiring anaerobically on Fe(III) as the sole terminal electron acceptor (TEA). Recent genetic and biochemical studies have indicated that anaerobic Fe(III) respiration by S. putrefaciens requires outer-membrane targeted secretion of respiration-linked Fe(III) reductases. Thus, the availability of Fe(III) to S. putrefaciens may be governed by equilibrium chemical speciation both in the solution phase and at the bacterial cell-aqueous or cell-mineral interface. In the present study, effects of Fe(III) speciation on rates of bacterial Fe(III) reduction have been systematically examined by cultivating S. putrefaciens anaerobically on a suite of Fe(III)-organic complexes as the sole TEA. The suite of Fe(III)-organic complexes spans the range of stability constants normally encountered in natural water systems and includes Fe(III) complexed to citrate, 5-sulfosalicylate, NTA, salicylate, tiron, and EDTA. Rates of bacterial Fe(III) reduction in the presence of dissolved chelating agents correlate with the thermodynamic stability constants of the Fe(III)-organic complexes, implying that chemical speciation governs Fe(III) bioavailability. Equilibrium Fe(III) sorption experiments measured the reversible coordination of Fe(III) with S. putrefaciens as a function of cell/Fe(III) concentration, time, and activity of competing chelating agents. Results show that S. putrefaciens readily sorbs dissolved Fe(III) but that adsorption is restricted by the presence of strong Fe(III)-chelating agents. Our results indicate that dissimilatory Fe(III) reduction by S. putrefaciens is controlled by equilibrium competition for Fe(III) between dissolved organic ligands and strongly sorbing functional groups on the cell surface.     

底物和环境因子对鱼源腐败希瓦氏菌和假单胞菌生长动力学的影响

水产品在贮运和加工过程中极易腐败,微生物是引起腐败的主要原因,腐败希瓦氏菌和假单胞菌分别是低温有氧贮藏海水鱼和淡水鱼时的特定腐败菌。为探讨环境因子和底物对特定腐败菌的影响,以源自大黄鱼和罗非鱼中的腐败希瓦氏菌和假单胞菌为对象,探究不同底物、温度、pH和NaCl影响下的菌体生长动态,采用Gompertz方程拟合生长曲线,定量分析对其最大比生长速率(μ_max)和迟滞期(λ)的影响,并使用Belehradek方程描述其μ_max与温度间的关系。结果表明:底物对腐败希瓦氏菌和假单胞菌生长影响较为明显;而温度对其生长影响最为显著,是影响腐败速率的决定性因素;pH对腐败希瓦氏菌生长影响较大,pH为7时其μ_max高于pH为6时,但对假单胞菌无明显影响,pH为4和5时,两者均不生长;NaCl含量对腐败希瓦氏菌生长有显著影响,随着NaCl含量的升高,其μ_max和λ降低。该研究可为探究水产品腐败菌调控因子筛选、靶向抑菌和延长产品货架期等提供支撑。     

Modeling the kinetics of the competitive adsorption and desorption of glyphosate and phosphate on goethite and gibbsite and in soils

The herbicide glyphosate and inorganic phosphate compete for adsorption sites in soil and on oxides. This competition may have consequences for the transport of both compounds in soil and hence for the contamination of groundwater. We present and evaluate six simple, kinetic models that only take time and concentrations into account. Three of the models were found suitable to describe the competition in soil. These three models all assumed both competitive and additive adsorption, but with different equations used to describe the adsorption. For the oxides, three additional models assuming only competitive adsorption were also found suitable. This is in accordance with the observation that the adsorption in soil is both competitive and additive, whereas the adsorption on oxides is competitive. All models can be incorporated in transport models such as the convection-dispersion equation.     

Influence of surface composition on the kinetics of alachlor reduction by iron pyrite

Even though naturally occurring iron sulfide minerals have previously been shown capable of promoting reductive dehalogenations, the role of surface composition has not been fully investigated. Some researchers have proposed that sulfur species represent redox-active moieties on iron pyrite surfaces. Results from this study indicate that neitherthe stoichiometric (100) pyrite surface, nor monosulfide defects, play direct roles in the observed reduction of the herbicide alachlor [2-chloro-2',6'-diethyl-N-(methoxymethyl)acetanilide]. Pyrite surfaces were initially characterized by X-ray photoelectron spectroscopy (XPS); the samples were then transferred to a liquid cell coupled to the ultrahigh vacuum chamber. Aliquots were periodically removed from the liquid cell to monitor the appearance of the reductive dechlorination product, 2',6'-diethyl-N-(methoxymethyl)acetanilide. In experiments with unaltered pyrite (100) surfaces, rates of reaction decreased over time, even though no change in surface composition could be discerned via XPS. In contrast, ion-bombarded surfaces, which are dominated by monosulfide species, exhibit an initial induction period of low reactivity during which the highly defective surface is oxidized by water. Only after the monosulfide defects undergo oxidation does the rate of alachlor reduction increase, precluding a direct role for these defects as alachlor reductants.     

pH、水分活度和NaCl对腐败希瓦氏菌生长/非生长界限及生长动力学参数的影响

以有氧贮藏养殖大黄鱼的特定腐败菌腐败希瓦氏菌为研究对象,通过p H、Aw、Na Cl和温度调控其生长/非生长状况,并分析其对生长动力学参数的影响,为有效抑制特定腐败菌增殖,延长产品货架期提供支持。将腐败希瓦氏菌接种于TSB中培养,测定不同调控因子下OD动态数据,确定生长/非生长界限,在生长范围内用修正的Gompertz方程进行拟合,对模型的拟合优度及调控因子对动力学参数的影响进行研究。实验表明,15℃时,p H≤5.0或Aw≤0.930或Na Cl≥7%时,腐败希瓦氏菌不生长;25℃时,p H≤5.0或Aw≤0.920或Na Cl≥12%时,腐败希瓦氏菌不生长;37℃时,腐败希瓦氏菌均不生长。腐败希瓦氏菌生长模型拟合显示,不同p H、Aw和Na Cl对其最大比生长速率和迟滞期有较大影响,模型的R2、偏差度和准确度接均接近1,均方根误差接近0,表明模型能较好地拟合不同条件下的腐败希瓦氏菌的生长。     

培养温度对腐败希瓦氏菌DSM6067生长动力学及细胞膜理化特性的影响

低温是保障水产品质量安全的重要方法,然而仍有部分耐冷菌能适应低温环境,继续生长繁殖并最终导致水产品腐败变质。为了解不同培养温度对腐败希瓦氏菌生长动力学参数及细胞膜理化特性变化的影响,以水产品中典型的耐冷腐败微生物腐败希瓦氏菌模式菌株DSM6067为研究对象,对细菌的生长情况、细胞膜脂肪酸组成、膜蛋白含量、细胞微观结构和细胞膜流动性进行分析。结果表明,腐败希瓦氏菌模式菌株DSM6067分别在30,10℃和4℃培养条件下经3.35,25.94 h和122.03 h的延滞期后进入对数生长期;腐败希瓦氏菌虽在低温环境下培养增速较为缓慢,但能够适应低温环境继续生长。腐败希瓦氏菌在相应培养温度下的对数生长中期,30℃条件下细菌细胞膜不饱和脂肪酸总量仅43.36%,其中C16:1(棕榈油酸)为26.62%,而4℃培养下细菌细胞膜不饱和脂肪酸总量为51.04%,其中单不饱和脂肪酸C16:1含量高达46.66%,低温培养下细菌细胞膜中C16:1含量显著增加;细菌细胞膜蛋白表达量随培养温度的降低而有所上升;腐败希瓦氏菌微观结构观察显示,低温培养下的细菌细胞膜较为平滑,胞内空泡较少,细胞体积略大;在低温适应过程中,细菌细胞膜流动性增强。腐败希瓦氏菌细胞膜理化特性所产生的变化为细菌更好地适应低温环境生长提供了一定的物质基础。     

Influence of organic complexation on the adsorption kinetics of nickel in river waters

The kinetics of Ni adsorption in rivers of widely different chemical characteristics have been studied by monitoring the uptake of 63Ni by suspended sediment particles. The rate and extent of adsorption was critically dependent on the presence and concentration of dissolved organic matter (DOM), defined analytically as the concentration of dissolved organic carbon (DOC). Thus, adsorption was greatest in experiments in which the DOM was decomposed by UV-oxidation and least in experiments in which Ni was preequilibrated with filtered river water before addition of particles. The extent of adsorption arising from the latter approach displayed a clear, inverse dependency on the concentration of DOC in the sample. These observations were interpreted and modeled in terms of the competing effects of DOM and particle sorption sites for dissolved Ni. Adsorption onto suspended particles in the absence of dissolved complexing ligands was adequately described by a reversible, two-stage reaction and a single set of adsorption rate constants. Forward and reverse rate constants defining Ni complexation with DOM of about 8 x 10(4) h(-1) M(-1) and 10 h(-1), respectively, were derived from data-fitting. The experimental and model results indicate that the toxicity, availability, and transport of Ni in freshwater environments are largely dictated by the concentration of DOM and the speciation of Ni entering the watercourse.     

Influence of acetate and CO2 on the TMAO-reduction reaction by Shewanella baltica.

In this work, the TMAO-reduction by Shewanella baltica, one of the representative spoilage organisms in modified atmosphere packaged marine fish fillets, and the effect of acetate and CO2 on this reduction were studied in vitro. The growth of S. baltica and the corresponding evolution of some compounds (acetate, lactate, pyruvate, glucose and trimethylamine (TMA)) were followed during storage at 4 degrees C in two types of broths. The first medium was a defined medium (pH = 6.8) to which lactate or pyruvate was added as hydrogen donor. Pyruvate showed to be more efficient as H-donor for S. baltica than lactate, as growth was much faster when equimolar amounts of pyruvate instead of lactate were present. Although the growth of S. baltica, when pyruvate is used as H-donor and no acetate is added, was not much inhibited by the CO2-atmosphere, CO2 had a pronounced effect on the studied reactions as it partly inhibited the reduction of pyruvate to acetate. The effect of acetate on this reaction was, on the other hand, not significant. To simulate the reactions occurring in situ, a buffered fish extract (pH = 6.8) was used. In spite of the neutral pH, the growth of S. baltica in this medium was highly inhibited by relatively small concentrations of acetate (< 0.3%). When 0.1% of acetate was added to the fish extract, less acetate was formed and lactate was more slowly consumed in comparison to the experiments without the addition of acetate. The consumption of lactate and the production of acetate were almost completely inhibited when the fish extract contained 0.25% of acetate. Apparently, the addition of acetate inhibited the use of lactate as H-donor. After extended storage times (17 days at 4 degrees C) TMA production started. Most probably, alternative H-donors were used by S. baltica, from which the pathway seems to be less energy efficient. This can be deduced from the exceptional growth inhibition of S. baltica by small amounts of acetate. However, when practical storage times for fish (e.g. 6 days at 4 degrees C after packaging) are considered, growth and TMAO-reduction by S. baltica was completely inhibited during this period by 0.25% of acetate.     

Effects of dissolved carbonate on arsenate adsorption and surface speciation at the hematite--water interface

Effects of dissolved carbonate on arsenate [As(V)] reactivity and surface speciation at the hematite-water interface were studied as a function of pH and two different partial pressures of carbon dioxide gas [P(CO2) = 10(-3.5) atm and approximately 0; CO2-free argon (Ar)] using adsorption kinetics, pseudo-equilibrium adsorption/titration experiments, extended X-ray absorption fine structure spectroscopic (EXAFS) analyses, and surface complexation modeling. Different adsorbed carbonate concentrations, due to the two different atmospheric systems, resulted in an enhanced and/or suppressed extent of As(V) adsorption. As(V) adsorption kinetics [4 g L(-1), [As(V)]0 = 1.5 mM and I = 0.01 M NaCl] showed carbonate-enhanced As(V) uptake in the air-equilibrated systems at pH 4 and 6 and at pH 8 after 3 h of reaction. Suppressed As(V) adsorption was observed in the air-equilibrated system in the early stages of the reaction at pH 8. In the pseudo-equilibrium adsorption experiments [1 g L(-1), [As(V)]0 = 0.5 mM and I = 0.01 M NaCI], in which each pH value was held constant by a pH-stat apparatus, effects of dissolved carbonate on As(V) uptake were almost negligible at equilibrium, but titrant (0.1 M HCl) consumption was greater in the air-equilibrated systems (P(CO2) = 10(-3.5) atm) than in the CO2-free argon system at pH 4-7.75. The EXAFS analyses indicated that As(V) tetrahedral molecules were coordinated on iron octahedral via bidentate mononuclear ( 2.8 A) and bidentate binuclear (approximately equal to 3.3 A) bonding at pH 4.5-8 and loading levels of 0.46-3.10 microM m(-2). Using the results of the pseudo-equilibrium adsorption data and the XAS analyses, the pH-dependent As(V) adsorption under the P(CO2) = 10(-3.5) atm and the CO2-free argon system was modeled using surface complexation modeling, and the results are consistent with the formation of nonprotonated bidentate surface species at the hematite surfaces. The results also suggest that the acid titrant consumption was strongly affected by changes to electrical double-layer potentials caused by the adsorption of carbonate in the air-equilibrated system. Overall results suggest that the effects of dissolved carbonate on As(V) adsorption were influenced by the reaction conditions [e.g., available surface sites, initial As(V) concentrations, and reaction times]. Quantifying the effects of adsorbed carbonate may be important in predicting As(V) transport processes in groundwater, where iron oxide-coated aquifer materials are exposed to seasonally fluctuating partial pressures of CO2(g).     

Use of Desirability Approach to Predict the Inhibition of Pseudomonas fluorescens, Shewanella putrefaciens and Photobacterium phosphoreum in Fish Fillets Through Natural Antimicrobials and Modified Atmosphere Packaging

The main goal of this paper was the prolongation of the microbiological acceptability limit (MAL) of gilthead sea bream fillets, added with some natural antimicrobials and packed under modified atmosphere; desirability approach was used, and the research was divided into two different steps. The first phase addressed fish fillet preservation through chitosan (0–4 %), grape fruit seed extract (GFSE) and thymol (0–6,000 ppm); Pseudomonas fluorescens, Shewanella putrefaciens and Photobacterium phosphoperum, inoculated onto the surface of fillets, were used as microbial targets. The concentration of the three antimicrobials were combined through a three variables/five levels central composite design; after fish inoculation and dipping into active solutions containing the natural compounds, fillets were stored at 4 °C and analysed periodically. Data of microbiological counts were fitted through a primary model (modified Gompertz equation), for the evaluation of MAL; MALs were used to build a polynomial model, able to draw a desirability profile for each antimicrobial. These outputs (desirability and polynomial equation) highlighted that Pseudomonas fluorescens was the most resistant microorganism; it could be inhibited through an active solution containing 2 % of chitosan and 6,000 ppm of GFSE and thymol. Therefore, in the second step of the research, fish fillets were dipped in this active solution and packed under two different atmospheres (30:40:30 O₂/CO₂/N₂ and 5:95 O₂/CO₂) and stored at 4 °C. For each microorganism, the stability time was evaluated, thus pointing out that the best sample was that packed under 5:95 O₂/CO₂.     

腐败希瓦氏菌和荧光假单胞菌对冷藏凡纳滨对虾虾汁品质的影响

为研究腐败希瓦氏菌（Shewanella putrefaciens）、荧光假单胞菌（Pseudomonas fluorescens）的致腐败能 力以及两种菌之间的相互关系,将这两种菌株的单一培养物和混合培养物分别接种至无菌虾汁中,于（4±1）℃下 培养8 d,测定虾汁中菌落数及总挥发性盐基氮（total volatile basic nitrogen,TVB-N）、氨基酸、腐胺、肌浆蛋白 和挥发性物质含量的变化情况。结果表明：混合接菌组中S. putrefaciens和P. fluorescens的最大菌落数分别为8.85、 8.26（lg（CFU/mL））,均高于单独接菌组。且混合接菌组的TVB-N含量和腐胺含量明显高于两组单一接菌组。 在虾汁培养物中S. putrefaciens比P. fluorescens更容易生长繁殖,这两种菌存在协同作用,可相互促进彼此的生长和 加速凡纳滨对虾虾汁的腐败。     

Quantification of the effects of organic and carbonate buffers on arsenate and phosphate adsorption on a goethite-based granular porous adsorbent

Interest in the development of oxide-based materials for arsenate removal has led to a variety of experimental methods and conditions for determining arsenate adsorption isotherms, which hinders comparative evaluation of their adsorptive capacities. Here, we systematically investigate the effects of buffer (HEPES or carbonate), adsorbent dose, and solution pH on arsenate and phosphate adsorption isotherms for a previously well characterized goethite-based adsorbent (Bayoxide E33 (E33)). All adsorption isotherms obtained at different adsorbate/adsorbent concentrations were identical when 1 mM of HEPES (96 mg C/L) was used as a buffer. At low aqueous arsenate and phosphate concentration (～1.3 μM), however, adsorption isotherms obtained using 10 mM of NaHCO(3) buffer, which is a reasonable carbonate concentration in groundwater, are significantly different from those obtained without buffer or with HEPES. The carbonate competitive effects were analyzed using the extended triple layer model (ETLM) with the adsorption equilibrium constant of carbonate calibrated using independent published carbonate adsorption data for pure goethite taking into consideration the different surface properties. The successful ETLM calculations of arsenate adsorption isotherms for E33 under various conditions allowed quantitative comparison of the arsenate adsorption capacity between E33 and other major adsorbents initially tested under varied experimental conditions in the literature.