Optimal Sequential And Parallel Algorithms To Compute A Steiner Tree On Permutation Graphs

This paper presents an optimal sequential and an optimal parallel algorithm to compute a minimum cardinality Steiner set and a Steiner tree. The sequential algorithm takes O ( n ) time and parallel algorithm takes O (log n ) time and O ( n /log n ) processors on an EREW PRAM model.     

An Optimal Shortest Path Parallel Algorithm for Permutation Graphs

We present an optimal parallel algorithm for the single-source shortest path problem for permutation graphs. The algorithm runs in O(log n) time using O(n/log n) processors on an EREW PRAM. As an application, we show that a minimum connected dominating set in a permutation graph can be found in O(log n) time using O(n/log n) processors.     

Parallel Algorithms for Series Parallel Graphs and Graphs with Treewidth Two 1

In this paper a parallel algorithm is given that, given a graph G=(V,E) , decides whether G is a series parallel graph, and, if so, builds a decomposition tree for G of series and parallel composition rules. The algorithm uses O(log \kern -1pt |E|log ^\ast \kern -1pt |E|) time and O(|E|) operations on an EREW PRAM, and O(log \kern -1pt |E|) time and O(|E|) operations on a CRCW PRAM. The results hold for undirected as well as for directed graphs. Algorithms with the same resource bounds are described for the recognition of graphs of treewidth two, and for constructing tree decompositions of treewidth two. Hence efficient parallel algorithms can be found for a large number of graph problems on series parallel graphs and graphs with treewidth two. These include many well-known problems like all problems that can be stated in monadic second-order logic. Received July 15, 1997; revised January 29, 1999, and June 23, 1999.     

Efficient Parallel Algorithms for Planar st-Graphs

Planar st -graphs find applications in a number of areas. In this paper we present efficient parallel algorithms for solving several fundamental problems on planar st -graphs. The problems we consider include all-pairs shortest paths in weighted planar st -graphs, single-source shortest paths in weighted planar layered digraphs (which can be reduced to single-source shortest paths in certain special planar st -graphs), and depth-first search in planar st -graphs. Our parallel shortest path techniques exploit the specific geometric and graphic structures of planar st -graphs, and involve schemes for partitioning planar st -graphs into subgraphs in a way that ensures that the resulting path length matrices have a monotonicity property [1], [2]. The parallel algorithms we obtain are a considerable improvement over the previously best known solutions (when they are applied to these st -graph problems), and are in fact relatively simple. The parallel computational models we use are the CREW PRAM and EREW PRAM.     

广义Hermitian特征问题标准化转换的有效并行块算法

广义Hermitian特征问题并行求解器的性能依赖于所选择的并行算法和矩阵的分布策略等诸多方面.基于块存储和快算法策略,提出了一个新的标准化转化的并行算法,该并行算法将Cholesky分解结合到广义特征问题标准化转换中, 降低了已有并行算法的通信开销,并增加了算法的并行性.新算法可显著改善已有并行算法的性能和可扩展性.另外给出了一个有效求解具有多个右端项的三角矩阵方程AX=B的并行块算法.通过自主开发的特征问题并行软件包PSEPS的测试结果表明,并行算法比传统的并行算法快大约1倍,并具有较好的可扩展性.     

Efficient Algorithms for k-Terminal Cuts on Planar Graphs

The minimum k-terminal cut problem is of considerable theoretical interest and arises in several applied areas such as parallel and distributed computing, VLSI circuit design, and networking. In this paper we present two new approximation and exact algorithms for this problem on an n-vertex undirected weighted planar graph G. For the case when the k terminals are covered by the boundaries of m > 1 faces of G, we give a min{O(n ² log n logm), O(m ² n ^1.5 log² n + k n)} time algorithm with a (2–2/k)-approximation ratio (clearly, m \le k). For the case when all k terminals are covered by the boundary of one face of G, we give an O(n k3 + (n log n)k ²) time exact algorithm, or a linear time exact algorithm if k = 3, for computing an optimal k-terminal cut. Our algorithms are based on interesting observations and improve the previous algorithms when they are applied to planar graphs. To our best knowledge, no previous approximation algorithms specifically for solving the k-terminal cut problem on planar graphs were known before. The (2–2/k)-approximation algorithm of Dahlhaus et al. (for general graphs) takes O(k n ² log n) time when applied to planar graphs. Our approximation algorithm for planar graphs runs faster than that of Dahlhaus et al. by at least an O(k/logm) factor (m \le k).     

Efficient External Memory Algorithms by Simulating Coarse-Grained Parallel Algorithms

External memory (EM) algorithms are designed for large-scale computational problems in which the size of the internal memory of the computer is only a small fraction of the problem size. Typical EM algorithms are specially crafted for the EM situation. In the past, several attempts have been made to relate the large body of work on parallel algorithms to EM, but with limited success. The combination of EM computing, on multiple disks, with multiprocessor parallelism has been posted as a challenge by the ACM Working Group on Storage I/ O for Large-Scale Computing. In this paper we provide a simulation technique which produces efficient parallel EM algorithms from efficient BSP-like parallel algorithms. The techniques obtained can accommodate one or multiple processors on the EM target machine, each with one or more disks, and they also adapt to the disk blocking factor of the target machine. When applied to existing BSP-like algorithms, our simulation technique produces improved parallel EM algorithms for a large number of problems.     

Efficient External Memory Algorithms by Simulating Coarse-Grained Parallel Algorithms

Abstract. External memory (EM) algorithms are designed for large-scale computational problems in which the size of the internal memory of the computer is only a small fraction of the problem size. Typical EM algorithms are specially crafted for the EM situation. In the past, several attempts have been made to relate the large body of work on parallel algorithms to EM, but with limited success. The combination of EM computing, on multiple disks, with multiprocessor parallelism has been posted as a challenge by the ACM Working Group on Storage I/ O for Large-Scale Computing. In this paper we provide a simulation technique which produces efficient parallel EM algorithms from efficient BSP-like parallel algorithms. The techniques obtained can accommodate one or multiple processors on the EM target machine, each with one or more disks, and they also adapt to the disk blocking factor of the target machine. When applied to existing BSP-like algorithms, our simulation technique produces improved parallel EM algorithms for a large number of problems.     

Efficient Parallel Algorithms for Planar st -Graphs

   Abstract. Planar st -graphs find applications in a number of areas. In this paper we present efficient parallel algorithms for solving several fundamental problems on planar st -graphs. The problems we consider include all-pairs shortest paths in weighted planar st -graphs, single-source shortest paths in weighted planar layered digraphs (which can be reduced to single-source shortest paths in certain special planar st -graphs), and depth-first search in planar st -graphs. Our parallel shortest path techniques exploit the specific geometric and graphic structures of planar st -graphs, and involve schemes for partitioning planar st -graphs into subgraphs in a way that ensures that the resulting path length matrices have a monotonicity property [1], [2]. The parallel algorithms we obtain are a considerable improvement over the previously best known solutions (when they are applied to these st -graph problems), and are in fact relatively simple. The parallel computational models we use are the CREW PRAM and EREW PRAM.     

Efficient Parallel Graph Algorithms for Coarse-Grained Multicomputers and BSP

In this paper we present deterministic parallel algorithms for the coarse-grained multicomputer (CGM) and bulk synchronous parallel (BSP) models for solving the following well-known graph problems: (1) list ranking, (2) Euler tour construction in a tree, (3) computing the connected components and spanning forest, (4) lowest common ancestor preprocessing, (5) tree contraction and expression tree evaluation, (6) computing an ear decomposition or open ear decomposition, and (7) 2-edge connectivity and biconnectivity (testing and component computation). The algorithms require O(log p) communication rounds with linear sequential work per round (p = no. processors, N = total input size). Each processor creates, during the entire algorithm, messages of total size O(log (p) (N/p)) . The algorithms assume that the local memory per processor (i.e., N/p ) is larger than p ^ε , for some fixed ε > 0 . Our results imply BSP algorithms with O(log p) supersteps, O(g log (p) (N/p)) communication time, and O(log (p) (N/p)) local computation time. It is important to observe that the number of communication rounds/ supersteps obtained in this paper is independent of the problem size, and grows only logarithmically with respect to p . With growing problem size, only the sizes of the messages grow but the total number of messages remains unchanged. Due to the considerable protocol overhead associated with each message transmission, this is an important property. The result for Problem (1) is a considerable improvement over those previously reported. The algorithms for Problems (2)—(7) are the first practically relevant parallel algorithms for these standard graph problems. Received July 5, 2000; revised April 16, 2001.     

Main Memory-Based Algorithms for Efficient Parallel Aggregation for Temporal Databases

The ability to model the temporal dimension is essential to many applications. Furthermore, the rate of increase in database size and stringency of response time requirements has out-paced advancements in processor and mass storage technology, leading to the need for parallel temporal database management systems. In this paper, we introduce a variety of parallel temporal aggregation algorithms for the shared-nothing architecture; these algorithms are based on the sequential Aggregation Tree algorithm. We are particularly interested in developing parallel algorithms that can maximally exploit available memory to quickly compute large-scale temporal aggregates without intermediate disk writes and reads. Via an empirical study, we found that the number of processing nodes, the partitioning of the data, the placement of results, and the degree of data reduction effected by the aggregation impacted the performance of the algorithms. For distributed result placement, we discovered that Greedy Time Division Merge was the obvious choice. For centralized results and high data reduction, Pairwise Merge was preferred for a large number of processing nodes; for low data reduction, it only performed well up to 32 nodes. This led us to a centralized variant of Greedy Time Division Merge which was best for the remaining cases. We present a cost model that closely predicts the running time of Greedy Time Division Merge.     

An Intersection Model for Multitolerance Graphs: Efficient Algorithms and Hierarchy

Tolerance graphs model interval relations in such a way that intervals can tolerate a certain degree of overlap without being in conflict. This class of graphs has attracted many research efforts, mainly due to its interesting structure and its numerous applications, especially in DNA sequence analysis and resource allocation, among others. In one of the most natural generalizations of tolerance graphs, namely multitolerance graphs, two tolerances are allowed for each interval—one from the left and one from the right side of the interval. Then, in its interior part, every interval tolerates the intersection with others by an amount that is a convex combination of its two border-tolerances. In the comparison of DNA sequences between different organisms, the natural interpretation of this model lies on the fact that, in some applications, we may want to treat several parts of the genomic sequences differently. That is, we may want to be more tolerant at some parts of the sequences than at others. These two tolerances for every interval—together with their convex hull—define an infinite number of the so called tolerance-intervals, which make the multitolerance model inconvenient to cope with. In this article we introduce the first non-trivial intersection model for multitolerance graphs, given by objects in the 3-dimensional space called trapezoepipeds. Apart from being important on its own, this new intersection model proves to be a powerful tool for designing efficient algorithms. Given a multitolerance graph with n vertices and m edges along with a multitolerance representation, we present algorithms that compute a minimum coloring and a maximum clique in optimal O(nlogn) time, and a maximum weight independent set in O(m+nlogn) time. Moreover, our results imply an optimal O(nlogn) time algorithm for the maximum weight independent set problem on tolerance graphs, thus closing the complexity gap for this problem. Additionally, by exploiting more the new 3D-intersection model, we completely classify multitolerance graphs in the hierarchy of perfect graphs. The resulting hierarchy of classes of perfect graphs is complete, i.e. all inclusions are strict.     

大图数据上顶点驱动的并行最小生成树算法

最小生成树(minimum spanning tree, MST)是图论中最为经典算法之一.基于MST结构的聚类、分类和最短路径查询等复杂图算法,在效率和结果质量方面均有显著提高.然而,随着互联网的迅猛发展,图数据规模也变得越来越大,包含千万甚至上亿个顶点的大图数据越发常见.因此,如何在大图数据上实现查询处理和数据挖掘算法已成为亟待解决的问题之一.除此之外,由于大图数据的动态性特征,如何动态地维护算法结果也势必成为最受关注的问题之一.针对目前集中式的最小生成树算法无法解决海量和动态图数据的问题,首先提出了分区Prim(partition Prim, PP)算法,基于此提出了顶点驱动的并行MST算法——PB(PP Boruvka)算法,并论证了PB算法的正确性.另外,基于MapReduce和BSP框架实现了PB算法.针对只删除动态图特征,提出了MST维护算法,以实现高效的增量计算.对提出的计算和维护算法进行了代价分析和比较.最后,使用真实和模拟数据集,验证了PB算法和维护算法的有效性、高效性和可扩展性.     

Echo Algorithms: Depth Parallel Operations on General Graphs

This paper describes a method for the detection of properties of general graphs in an environment in which each node can be considered an autonomous processor, interacting with its neighbors by passing messages.     

Serial and Parallel Algorithms for (k,2)-Partite Graphs

We introduce a class of layered graphs which we call (k,2)-partite and which we argue are an interesting class because of several important applications. We show that testing for (k,2)-partiteness can be done efficiently both on sequential and parallel machines, by showing that membership is in NSPACE(log n) and in NC². We show that (k,2)-partite graphs have bounded path width. We then show that a particular NP-complete problem, namely Maximum Independent Set, is solvable in linear time on bounded pathwidth graphs if the path decomposition is included in the input. Finally, we show that the Maximum Independent Set problem is in NC² for (k,2)-partite graphs. We note that linear time solutions for certain NP-complete problems have been shown for a wider class of graphs, namely partial k-trees. Our linear time algorithm is somewhat simpler in structure. We conjecture that our techniques can be used on many NP-complete problems to yield efficient algorithms for (k,2)-partite graphs.     

Efficient Parallel Nonlinear Multigrid Relaxation Algorithms for Low-Level Vision Applications

Multigrid techniques have been shown to significantly improve the convergence rate of the nonlinear relaxation algorithms used in computer vision for the extraction of low-level image features. It is also well known that the computations involved with relaxation algorithms are regular and local, and lead naturally to massive data parallelism. However, standard data parallelism does not exploit the large computing resources of the now available massively parallel 2D processor arrays when coarse image resolutions (i.e., small image grids) have to be processed, like in multigrid methods. In this research note, we present an algorithmic framework which enables us making a full use of the large potential of data parallelism for the implementation of nonlinear multigrid relaxation methods. The approach combines two different levels of parallelism: parallel updating of the image sites and concurrent explorations of the configuration space of the problem. The efficiency of the method is demonstrated on two different low-level vision applications: restoration of noisy images and optical flow computation.     

An Efficient Parallel Algorithm for Maximum Matching for Some Classes of Graphs

TheP₄-tidy graphs were introduced by I. Rusu to generalize some already known classes of graphs with few inducedP₄(cographs,P₄-sparse graphs,P₄-lite graphs). Here, we propose an extension of R. Lin and S. Olariu's work (1994.J. Parallel Distributed Computing22, 26–36.) on cographs, using the modular decomposition. As an application, we show how to obtain a maximum matching parallel algorithm for the family ofP₄-tidy graphs (repre- sented by a parse tree) inO(log n) time withO(n/log n) processors in the EREW-PRAM model withn-vertex graphs.     

Parallel Algorithms for Maximum Matching in Complements of Interval Graphs and Related Problems

Given a set of n intervals representing an interval graph, the problem of finding a maximum matching between pairs of disjoint (nonintersecting) intervals has been considered in the sequential model. In this paper we present parallel algorithms for computing maximum cardinality matchings among pairs of disjoint intervals in interval graphs in the EREW PRAM and hypercube models. For the general case of the problem, our algorithms compute a maximum matching in O( log ³ n) time using O(n/ log ² n) processors on the EREW PRAM and using n processors on the hypercubes. For the case of proper interval graphs, our algorithm runs in O( log n ) time using O(n) processors if the input intervals are not given already sorted and using O(n/ log n ) processors otherwise, on the EREW PRAM. On n -processor hypercubes, our algorithm for the proper interval case takes O( log n log log n ) time for unsorted input and O( log n ) time for sorted input. Our parallel results also lead to optimal sequential algorithms for computing maximum matchings among disjoint intervals. In addition, we present an improved parallel algorithm for maximum matching between overlapping intervals in proper interval graphs. Received November 20, 1995; revised September 3, 1998.     

Efficient Out of Core Sorting Algorithms for the Parallel Disks Model

In this paper we present efficient algorithms for sorting on the Parallel Disks Model (PDM). Numerous asymptotically optimal algorithms have been proposed in the literature. However many of these merge based algorithms have large underlying constants in the time bounds, because they suffer from the lack of read parallelism on PDM. The irregular consumption of the runs during the merge affects the read parallelism and contributes to the increased sorting time. In this paper we first introduce a novel idea called the dirty sequence accumulation that improves the read parallelism. Secondly, we show analytically that this idea can reduce the number of parallel I/O's required to sort the input close to the lower bound of [Formula: see text]. We experimentally verify our dirty sequence idea with the standard R-Way merge and show that our idea can reduce the number of parallel I/Os to sort on PDM significantly.