Heritability of clinical mastitis incidence and relationships with sire transmitting abilities for somatic cell score, udder type traits, productive life, and protein yield

The objective of this study was to determine the relationships among daughter clinical mastitis during first and second lactations and sire transmitting abilities for somatic cell score, udder type traits, productive life, and protein yield. Data on clinical mastitis during first lactation were available for 1795 daughters (in six Pennsylvania herds, one Minnesota herd, and one Nebraska herd) of 283 Holstein sires. Data on clinical mastitis during second lactation were available for 1055 of these daughters. A total of 479 cows had 864 clinical episodes during first lactation, and 230 cows had 384 clinical episodes during second lactation. Clinical mastitis incidence and the total number of clinical episodes during each lactation were regressed on herd-season of calving (a classification variable), age at first calving, lactation length, and sire transmitting abilities taken one at a time. Linear effects, nonlinear effects, and odds ratios were estimated for sire transmitting abilities. Separate analyses were conducted on dependent variables that considered clinical mastitis from: all organisms, coagulase-negative staphylococci, coliform species, streptococci other than Streptococcus agalactiae, and the most common environmental organisms (coliform species and streptococci other than Streptococcus agalactiae). Heritability of clinical mastitis ranged from 0.01 to 0.42. Daughters of sires that transmit the lowest somatic cell score had the lowest incidence of clinical mastitis and the fewest clinical episodes during first and second lactations. Daughters of sires that transmit longer productive life, shallower udders, deeper udder cleft, and strongly attached fore udders had either fewer clinical episodes or lower clinical mastitis incidence during first and second lactations. The incidence of clinical mastitis and the number of clinical episodes per lactation may be reduced by selection for lower somatic cell score, longer productive life, shallower udders, deeper udder cleft, or strongly attached fore udders.     

Relationships among severity and duration of clinical mastitis and sire transmitting abilities for somatic cell score,udder type traits,productive life,and protein yield

The objective of this study was to determine the relationships among severity and duration of clinical mastitis during first and second lactation and sire transmitting abilities for somatic cell score, udder type traits, productive life, and protein yield. Recording of clinical episodes began at first parturition for 1704 Holstein cows (in six Pennsylvania herds and one Nebraska herd) and continued into second lactation for 1055 of these cows. A total of 456 cows (sired by 168 bulls) had at least one clinical episode during first lactation, and 230 cows (sired by 100 bulls) had at least one clinical episode during second lactation. A severity code from 1 (normal milk) to 5 (acute systemic mastitis) was assigned daily (for up to 30 d after detection) to all quarters that had clinical mastitis. Only the severity codes for the first clinical episode to occur during first and second lactation are considered here. The initial and maximum severity codes, as well as the natural logarithms of both the sum of severity codes that were above normal (> 1) and the total days severity codes were above normal were regressed on herd (a classification variable), age at first calving, days in milk at clinical detection, and sire transmitting abilities taken one at a time. Linear and nonlinear effects were estimated for sire transmitting abilities. Separate analyses were conducted on dependent variables that considered severity and duration of clinical mastitis from: all organisms, coagulase-negative staphylococci, coliform species, streptococci other than Streptococcus agalactiae, and the most common environmental organisms (coliform species and streptococci other than Streptococcus agalactiae). Daughters of sires that transmit the lowest somatic cell score had the least severe and shortest clinical episodes from environmental organisms during first lactation. Selection for lower somatic cell score may reduce the severity and duration of clinical episodes from environmental organisms during first lactation.     

Field survey of clinical mastitis in low somatic cell count herds

Nine commercial dairy herds, each with low herd milk somatic cell counts, were monitored for 1 yr to determine prevalence of intramammary infections and rates of clinical mastitis. Staphylococcus species was the bacterial group most frequently isolated from quarters at calving and at drying off. Environmental streptococci and coliform intramammary infections totaled less than 6% of quarters at both calving and at drying off. Staphylococcus aureus were isolated from less than 1% of quarters and Streptococcus agalactiae from 0% of quarters at both calving and drying off. A total of 646 clinical cases of mastitis were diagnosed in 548 quarters of 406 cows. Mean rate of clinical mastitis among herds was .457 clinical cases/305 cow-days. Rates of clinical mastitis ranged among herds from .273 to .748 clinical cases/305 cow-days. Coliforms and bacteriologically negative and environmental streptococci accounted for 82.3% of clinical cases. Rates of clinical mastitis and severity of clinical signs differed among herds, seasons of the year, parity groups, and stages of lactation. Rates of clinical mastitis were highest during summer, in first lactation cows, and during the first 7 d of lactation.     

Germicidal teat dip in a herd with low prevalence of Streptococcus agalactiae and Staphylococcus aureus mastitis

Effectiveness of an iodophor teat dip in reducing new intramammary infection and clinical mastitis was tested in a herd free of Streptococcus agalactiae and with a low prevalence of Staphylococcus aureus infections. In this 6-mo study with an average of 152 lactating cows on trial on sampling dates, right rear and left front teats were dipped after each milking while right front and left rear teats were undipped controls. Teat dipping significantly reduced new infections by Staphylococcus aureus, streptococci (other than Streptococcus agalactiae), coagulase-negative staphylococci, and Corynebacterium bovis and reduced clinical cases caused by infections established during the trial. However, the dip did not reduce new infections or clinical mastitis caused by coliform bacteria. Therefore, use of a germicidal dip is recommended for herds with a low prevalence of Streptococcus agalactiae and Staphylococcus aureus, but the practice should not be expected to control coliform mastitis.     

Environmental mastitis: cause, prevalence, prevention

Rate of intramammary infection by coliform bacteria and species of streptococci other than Streptococcus agalactiae (environmental pathogens) was studied in a dairy herd in total confinement. Rate was higher during the dry period than during lactation and increased progressively as parity increased. Rate was maximal during summer and coincided with maximum exposure to coliforms in bedding. Streptococcal infections were longer than coliform. Approximately 59% of streptococcal infections and 69% of coliform infections were present for 30 lactation days or less. Percent quarters infected by day of year varied between .7 and 3.0% for coliform bacteria and between 1.6 and 4.7% for streptococci. Approximately 81% of coliform infections and 53% of streptococcal infections during lactation were clinical. Clinical cases were highest during the first 76 days of lactation and during summer. Only 6.7% of coliform infections resulted in acute coliform mastitis, and all acute cases were during summer or early lactation. Dry cow therapy reduced rate of streptococcal infection during the early dry period but was without effect during the prepartum period. There was no effect of dry cow therapy on coliform infection rate during the dry period. Problems associated with prevalence and control of environmental mastitis were discussed.     

Genetic evaluation for length of productive life with censored records.

This study was conducted to investigate the impact of censoring on the accuracy of sire evaluation for the length of productive life estimated by means of survival analysis using simulated and real dairy cattle data from the Swiss Braunvieh population. Data were simulated under a Weibull model with two fixed effects and a random sire effect with a sire variance of 0.04. Two different family structures investigated were 1000 sires with 10 daughters each and 200 sires with 50 daughters each. Sires were assumed to be related through their sires. The reference data were generated assuming no censoring. Sire effects were estimated from the reference data with and without considering the relationships among sires and referred to as the estimated transmitting abilities (ETA) of sires. The impact of censoring on accuracy of ETA and ranking of sires was investigated by computing rank correlations among true and estimated sire effects and among estimated sire effects from the reference data and from several different data files with increased proportion of censored records. Estimated transmitting abilities were generally more accurate with a large number of daughters. The rank correlations among the ETA of sires from the data with censored records and the ETA from the reference data decreased with an increased proportion of censored records. Considering relationships among sires resulted in higher rank correlations when the proportion of censored records was large. With 50 daughters per sire, accuracy of 70% can be achieved approximately 2 yr after first calving of the daughters with about 50% censored records. With the real data, a rank correlation with the ETA of sires from the reference data of 0.70 to 0.80 can be achieved with about 65% of records censored and about 2.5 yr after the first calving of the youngest daughters of the sires.     

Prediction of longevity breeding values for US Holstein sires using survival analysis methodology

Breeding values of Holstein sires for daughter longevity in each of 9 geographical regions of the United States were predicted using a Weibull proportional hazards model. Longevity (also commonly referred to as herd life or length of productive life) was defined as the number of days from first calving until culling or censoring. Records from 2,322,389 Holstein cows with first calving from 1990 to 2000 were used. In addition to the sire's additive genetic merit, our failure time model included time-dependent effects of herd-year-season of calving, parity-stage of lactation, and within-herd-year quintiles for mature equivalent fat plus protein yield, as well as the time-independent effect of age at first calving. Sire variances and parameters of the Weibull distribution were estimated separately for each region. The relative risk of culling for daughters of each individual sire was expressed relative to that of daughters of an average sire (within a specific region). Predicted breeding values for functional longevity, expressed as relative risk ratios, ranged from 0.7 to 1.3. Sizable differences were observed between geographical regions in sire rankings, as well as estimated sire variances and gamma parameters (of the distribution of herd-year-season effects), suggesting that a single national ranking may not be appropriate for every region. Two random samples of herds were selected from the full national data set; these contained 375,086 records and 256,751 records, respectively. Predicted transmitting abilities (PTA) of sires for daughter longevity were calculated using the Weibull proportional hazards (sire) model described previously but without the correction for milk production. These were compared with predictions from a linear (animal) model, as currently used for routine genetic evaluation of length of productive life in the United States. Logistic regression of daughters' stayability to 36, 48, 60, 72, or 84 mo of life (among animals that had opportunity to stay that long) on sires' PTA indicated that the proportional hazards model yielded more accurate predictions of daughter longevity than the linear animal model, even though the latter relied on denser pedigree information.     

Short communication: Modification of genetic evaluation of herd life from a three-trait to a five-trait model in Canadian dairy cattle

The national genetic evaluation of herd life for Canadian dairy breeds was modified from a 3-trait to a 5-trait animal model. The genetic evaluation incorporates information from daughter survival (direct herd life) and information from conformation, fertility, and udder health traits that are related to longevity (indirect herd life). Genetic evaluations for direct herd life were based on cows’ survival from first calving to 120 days in milk (DIM), from 120 to 240 DIM, from 240 DIM to second calving, survival to third calving, and survival to fourth calving, which were analyzed using a multiple-trait animal model. Sire evaluations obtained for each of the 5 survival traits were combined into an overall sire evaluation for direct herd life. Sire evaluations for indirect herd life were based on an index of sire evaluations for dairy strength, feet and legs, overall mammary, rump angle, somatic cell score, milking speed, nonreturn rate in cows, and interval from calving to first service. A multiple-trait sire model based on multiple-trait across-country evaluation methodology was used to combine direct and indirect genetic evaluations for herd life into an overall genetic evaluation for herd life. Sire evaluations for herd life were expressed as an estimated transmitting ability for the number of lactations. The transmitting ability represents expected differences among daughters for herd life; and the average herd life was set to 3 lactations.     

Efficacy of chlorhexidine as a postmilking teat disinfectant for the prevention of bovine mastitis during lactation

A natural exposure trial was conducted for 12 mo in a herd of 150 lactating Jersey cows to determine efficacy of a .35% chlorhexidine teat dip containing a glycerine emollient for the prevention of bovine intramammary infections. Right teats of cows were dipped in the experimental teat dip after milking machine removal and left teats were not dipped. The herd was free of Streptococcus agalactiae and had a low prevalence of Staphylococcus aureus. Most new major pathogen intramammary infections resulted from Streptococcus species, primarily Streptococcus uberis and Streptococcus dysgalactiae. New infections by Streptococcus species were significantly lower in teats dipped in chlorhexidine than in undipped teats. Overall efficacy of the chlorhexidine teat dip against major mastitis pathogens was 50%. The experimental teat dip also reduced coagulase-negative Staphylococcus species infections 49.0% and Corynebacterium bovis infections 65.2%. Overall efficacy against minor mastitis pathogens was 54.0%. No irritation or chapping of teats dipped in the experimental teat dip was observed.     

Predictive abilities of different statistical models for analysis of survival data in dairy cattle

The objective of this study was to compare alternative trait definitions and statistical models for genetic evaluation of survival in dairy cattle. Data from the first 5 lactations of 808,750 first-crop daughters of 3,064 Norwegian Red sires were analyzed. Seven sire models were used for genetic analyses: linear and threshold cross-sectional models for binary survival scores from first lactation; a linear multi-trait model for survival scores from the first 3 lactations; linear and threshold repeatability models for survival scores from the first 5 lactations; a Weibull frailty model for herd life in first lactation; and a Weibull frailty model for herd life in the first 5 lactations. The models were compared to assess predictive ability of sire estimated breeding values with respect to average survival 365 d after first calving for second-crop daughters (not included in calculation of predicted transmitting abilities) of 375 elite sires. Generally, the linear multi-trait model analyzing survival in the first 3 lactations as correlated traits gave more-accurate predicted sire breeding values compared with both linear and Weibull frailty models using data from first lactation only, even when the latter models were extended to include data up to the sixth lactation. The Weibull frailty models did not improve predictive ability of sire estimated breeding values over what was obtained using a simple cross-sectional linear model for binary survival in first lactation.     

Impact of genetic merit for milk somatic cell score of sires and maternal grandsires on herd life of their daughters

A retrospective study of the impact of the estimated breeding values of sires and maternal grandsires for somatic cell score (SCS) on productive life (PL) of Holsteins and Jerseys was conducted. Data included records from 2,626,425 Holstein and 142,725 Jersey cows. The sires and maternal grandsires of cows were required to have been available through artificial insemination and to have predicted transmitting ability (PTA) SCS evaluations based on 35 or more daughters. A weighted function (WPTA) of sire and maternal grandsire PTA for SCS was used: (sire PTA + 0.5 maternal grandsire PTA)/1.5. The 3 dependent variables were PL, frequency of cows culled for mastitis, and first-lactation SCS. The model included effects of herd, birth year, and WPTA (WPTA was categorized into groups: <2.70, 2.70 to 2.79, …, 3.20 to 3.29, ≥3.30). For analysis of first-lactation SCS, calving year and calving month were substituted for birth year. Differences among WPTA groups were highly significant: as WPTA increased, PL decreased, whereas percentage culled for mastitis and first-lactation SCS increased. The range in PL from lowest to highest WPTA was 5.07 mo for Holsteins and 4.73 mo for Jerseys. Corresponding differences for percentage culled for mastitis were 7.0 and 5.6% and for SCS were 0.95 and 1.04 (for Holsteins and Jerseys, respectively). Although phenotypic studies suggest that cows with extremely low SCS were less resistant to mastitis, our results showed consistent improvements in PL, percentage culled for mastitis, and SCS of daughters when bulls were chosen for low PTA SCS.     

Effects of prepartum intramammary antibiotic therapy on udder health, milk production, and reproductive performance in dairy heifers

Preparturient heifers (n = 561) from 9 herds in 6 US states and 1 Canadian province were enrolled in a study to test the hypothesis that prepartum intramammary therapy would cure existing intramammary infections (IMI) and lead to increased milk production, reduced linear somatic cell count (LSCC), and improved reproductive performance. Mammary secretions were collected 10 to 21 d before expected calving from each quarter. Heifers were then assigned by identification number to receive intramammary therapy consisting of infusion of one tube per mammary quarter of a lactating cow commercial antibiotic preparation containing cephapirin or to a nontreated control group. Overall, 34.1% of mammary quarters were infected with a mastitis pathogen before parturition and 63.4% of heifers had at least one mammary quarter infected. The coagulase-negative staphylococci (CNS) caused the majority (74.8%) of prepartum IMI. Coagulase-positive staphylococci, environmental streptococci, and coliforms accounted for 24.5% of prepartum infections. Treatment had a significant effect on the cure rate of infected mammary quarters. Mammary quarters that were infected prepartum and treated with antibiotics had a 59.5% efficacy of cure rate and the percentage reduction in heifers with IMI was 51.9. Control quarters had a spontaneous cure rate of 31.7%. Treatment did not significantly affect milk production or LSCC in the first 200 d of lactation; however, there was a significant treatment by herd interaction for milk production. Quarters cured of either CNS or major pathogens had a lower LSCC in the first 200 d of lactation. No significant effect on services per conception or days open between treatment and control groups was observed. This trial demonstrated that prepartum intramammary antibiotic therapy did reduce the number of heifer IMI postpartum. Milk production, LSCC, and reproductive performance during the first 200 d of the first lactation were not significantly affected by treatment. Given these results, use of prepartum intramammary antibiotic therapy in heifers as a universal strategy to increase milk production in first-lactation dairy cows may not be warranted.     

Effect of herd environment on the genetic and phenotypic relationships among milk yield, conception rate, and somatic cell score in Holstein cattle

A total of 248,230 primiparous records of Holstein cows calving from 1987 to 1994 (daughters of 588 sires in 3042 herds) was used to evaluate potential genotype by environment interactions among mature equivalent milk yield, lactation mean somatic cell score, and conception rate at first service. Herds were classified into low and high environmental groups using three different criteria: standard deviation of herd mature equivalent milk yield, a combination of herd mature equivalent milk yield mean and standard deviation, and the herd mean of body weight at first calving divided by age at first calving. Genetic parameters were modeled by using multiple-trait linear mixed models and were fitted using the multiple-trait derivative-free software. Heritabilities for mature equivalent milk yield, lactation mean somatic cell score, and conception rate at first service were 0.221, 0.106, and 0.015 in low environment herds and 0.300, 0.093, and 0.009 in high environment herds, respectively. Genetic (and phenotypic) correlations between mature equivalent milk yield and lactation mean somatic cell score, mature equivalent milk yield and conception rate at first service, and lactation mean somatic cell score and conception rate at first service were 0.277, -0.417, and -0.209, (-0.049, -0.180, and -0.040) and 0.173, -0.318, and -0.144, (-0.087, -0.166, and -0.035) in low and high environment herds, respectively. The genetic correlations between pairs of traits were consistently smaller in high environment herds, suggesting that differences in management between the two environment levels lessened the antagonistic genetic association between the traits studied. A long-range plan for low environment herds should focus on improving the level of management, which would greatly reduce the unfavorable correlated changes in lactation mean somatic cell score and conception rate at first service associated with the genetic improvement of mature equivalent milk yield.     

Relationship between individual herd-heritability estimates and sire misidentification rate

The objectives of this study were to estimate heritabilities within herds participating in Dairy Herd Improvement and determine the relationship of the individual herd heritability with sire misidentification rate. Individual herd heritabilities for milk, fat, and protein yield and somatic cell score (SCS) were calculated with daughter-dam regression and daughter-sire predicted transmitting ability (PTA) regression using 4,712,166 records from 16,336 herds available for August 2000 evaluations and 7,084,953 records from 20,920 herds available for August 2006 evaluations. Herd heritabilities were estimated using regression models that included fixed breed, age within parity, herd-year-season of calving, dam records nested within state, sire PTA within state, and an interaction between sire PTA and herd variance; random regression coefficients were dam records within herd and sire PTA within herd. Average daughter-dam herd heritability estimates ranged from 0.21 (SCS in 2000) to 0.73 (protein percentage in 2006), whereas daughter-sire herd heritability ranged from 0.10 (SCS in 2000) to 0.42 (protein percentage in 2006). Verification of sire identification with DNA marker analysis was provided by Accelerated Genetics and Alta Genetics Inc. Daughter-sire herd heritability was more strongly correlated with sire misidentification rate than daughter-dam herd heritability. The correlation between the first principal component for all measures of herd heritability and sire misidentification rate was −0.38 (176 herds) and −0.50 (230 herds) in 2000 and 2006, respectively. Herd heritability can be estimated with simple regression techniques for several thousand herds simultaneously. The herd heritability estimates were correlated negatively with sire misidentification rates and could be used to identify herds that provide inaccurate data for progeny testing.     

Short communication: association between milk yield at dry-off and probability of intramammary infections at calving

The association between milk yield at dry-off and intramammary infections at calving was evaluated from 116 lactations in one herd. Duplicate quarter samples were collected within 3 d after calving to estimate prevalence of intramammary infection at calving; information on cows' parity, daily milk yields, weekly somatic cell counts, and dry-off and calving dates were available for the data analyses. Generalized linear models with logit link were used to model the probability of a cow or a quarter being infected at calving, accounting for the clustered data. Increasing milk production at dry-off was a significant risk factor for both a cow and a quarter being infected with environmental pathogens at calving, but infections caused by coagulase-negative staphylococci at calving were not associated with milk yield at dry-off. For every 5-kg increase in milk yield at dry-off above 12.5 kg, the odds of a cow having an environmental intramammary infection at calving increased at least by 77%.     

Response to alternative genetic-economic indices for Holsteins across 2 generations

Four US genetic-economic indices for dairy cattle were retrofitted to illustrate differences in phenotypic response observed for retrospective selection over 2 generations for currently evaluated traits, even though producers did not have evaluations available at the time for direct selection for those traits. Differences among cows were compared based on ranking of their sires and maternal grandsires (MGS) for the 4 retrofitted indices. Holstein artificial insemination bulls (106,471) were categorized by quintile for each index, and 25 cow groups were formed based on quintiles for sire and MGS (2 generations). Data included records from 1,756,805 cows in 26,106 herds for yield traits, productive life, pregnancy rate, and somatic cell score; 692,656 cows in 9,967 herds for calving difficulty; and 270,564 cows in 4,534 herds for stillbirths. For each index, least squares differences between the 25 cow groups were examined for 8 first-parity traits (milk, fat, and protein yields; productive life; somatic cell score; pregnancy rate; calving difficulty; and stillbirth) that had been standardized for age. Analysis removed effects of herd and cow birth year. Seven of 25 cow groups were consolidated into 3 groups based on index ranking for their male ancestors (low, medium, and high). The cow group with high sire and MGS rankings for the 2006 net merit index produced more milk (219 kg), fat (21 kg), and protein (11 kg) and had longer productive life (6.3 mo), lower somatic cell score (0.21), higher pregnancy rate (1.2 percentage units), fewer difficult births in heifers (3.8 percentage units), and lower stillbirth rate (4.6 percentage units) than did the group with low sire and MGS rankings. For cow groups based on sire and MGS rankings for 1971 (milk and fat) and 1977 (milk, fat, and protein) indices, advantages for the group with high sire and MGS rankings were much larger for yield traits but smaller (and sometimes even unfavorable) for other traits. Cow groups based on sire and MGS rankings for the 1994 net merit index generally had differences that were intermediate to groups based on sire and MGS rankings for the 1977 and 2006 indices. Phenotypic differences revealed retrospectively between genetic-economic indices indicate that genetic improvement should be made for all traits included in recent net merit indices.     

Identification of informative cooperator herds for progeny testing based on yield deviations

Several arguments exist for breeding organizations to focus on cooperative herds for progeny testing, but an efficient methodology addressing herd selection strategies is lacking. In this study, a new approach based on yield deviations (YD) to identify the most informative cooperator herds in terms of genetic differentiation was evaluated. Data comprised YD from 717,377 first-lactation cows from 2 regions in East and West Germany calving between January 2003 and January 2008. Daughters were ranked and classified within sire according to their YD for protein yield, fat yield, milk yield, and somatic cell score. Cows in created YD classes were merged with respective herd-calving year (HCY) characteristics. Cows of extreme YD classes (i.e., such classes including the most extreme daughter contributions), belonged to herds characterized by a high HCY production level, a low value for HCY somatic cell count, and a low HCY age at first calving (AFC). Cows with low extremes for YD in protein yield were associated with the lowest HCY production level, a high value for HCY somatic cell count, and a late HCY AFC. Ranks of HCY and ranks of herds considering HCY over the whole analyzed period were calculated by averaging YD percentages within HCY, and within herds, respectively. The YD percentages (in absolute values so that negative and positive daughter contributions were treated equally) were derived from the rank of the YD of a daughter within sire in relation to all daughters of a sire. A further partitioning of ranks of herds into quartiles revealed the following results: herds in the first quartile had the highest average protein yield, the highest intra-herd standard deviation for the national production index, and the lowest AFC. Correlations between herd rankings for different production traits ranged between 0.64 and 0.86, and were 0.65 for West Germany and 0.62 for East Germany between HCY 2006 and the average herd rank of all calving years. Correlations between daughter yield deviations for the highest and the lowest herd quartile of 0.87 for protein yield disproved concerns regarding genotype by environment interaction between test and production environment. The suggested methodology to identify informative cooperator herds is easy to implement, holds for regions with small herd sizes, and thus, may help in implementing sustainable and competitive dairy cattle breeding programs.     

Relationship between external body measurements and calving difficulties in Canadian Holstein-Friesian cattle

Thirteen body measurements per cow were collected from 1980 to 1981 on 3,193 Canadian Holstein-Friesian cows by 576 sires in 100 herds. These data were analyzed to test effects of herd, age of cow, stage of lactation, and generation group; to predict sire proofs; to estimate heritabilities and genetic and phenotypic correlations among body measures; and to estimate correlations between sire proofs for body measures and sire (maternal grandsire of calf) proofs for calving ease. Herd and age of cow were important sources of variation for all external body measures. Stage of lactation was an important source of variation for heart girth, and for slopes from hip to pin and from thurl to pin. Effects of generation group were not significant for any body measures. Heritabilities were moderate to high (.21 to .45). Genetic correlations among all height characteristics were large and positive (.68 to .99). Daughters that were large with wide pins, long sloping rumps, and little slope from thurl to pin bone seemed to be favored for easy calving.     

Comparison between a Weibull proportional hazards model and a linear model for predicting the genetic merit of US Jersey sires for daughter longevity

Predicted transmitting abilities (PTA) of US Jersey sires for daughter longevity were calculated using a Weibull proportional hazards sire model and compared with predictions from a conventional linear animal model. Culling data from 268,008 Jersey cows with first calving from 1981 to 2000 were used. The proportional hazards model included time-dependent effects of herd-year-season contemporary group and parity by stage of lactation interaction, as well as time-independent effects of sire and age at first calving. Sire variances and parameters of the Weibull distribution were estimated, providing heritability estimates of 4.7% on the log scale and 18.0% on the original scale. The PTA of each sire was expressed as the expected risk of culling relative to daughters of an average sire. Risk ratios (RR) ranged from 0.7 to 1.3, indicating that the risk of culling for daughters of the best sires was 30% lower than for daughters of average sires and nearly 50% lower than than for daughters of the poorest sires. Sire PTA from the proportional hazards model were compared with PTA from a linear model similar to that used for routine national genetic evaluation of length of productive life (PL) using cross-validation in independent samples of herds. Models were compared using logistic regression of daughters' stayability to second, third, fourth, or fifth lactation on their sires' PTA values, with alternative approaches for weighting the contribution of each sire. Models were also compared using logistic regression of daughters' stayability to 36, 48, 60, 72, and 84 mo of life. The proportional hazards model generally yielded more accurate predictions according to these criteria, but differences in predictive ability between methods were smaller when using a Kullback-Leibler distance than with other approaches. Results of this study suggest that survival analysis methodology may provide more accurate predictions of genetic merit for longevity than conventional linear models.     

Genetic associations between clinical mastitis and somatic cell score in early first-lactation cows

The objectives of this study were to examine genetic associations between clinical mastitis and somatic cell score (SCS) in early first-lactation cows, to estimate genetic correlations between SCS of cows with and without clinical mastitis, and to compare genetic evaluations of sires based on SCS or clinical mastitis. Clinical mastitis records from 15 d before to 30 d after calving and first test-day SCS records (from 6 to 30 d after calving) from 499,878 first-lactation daughters of 2,043 sires were analyzed. Results from a bivariate linear sire model analysis of SCS in cows with and without clinical mastitis suggest that SCS is a heterogeneous trait. Heritability of SCS was 0.03 for mastitic cows and 0.08 for healthy cows, and the genetic correlation between the 2 traits was 0.78. The difference in rank between sire evaluations based on SCS of cows with and without clinical mastitis varied from −994 to 1,125, with mean 0. A bivariate analysis with a threshold-liability model for clinical mastitis and a linear Gaussian model for SCS indicated that heritability of liability to clinical mastitis is at least as large as that of SCS in early lactation. The mean (standard deviation) of the posterior distribution of heritability was 0.085 (0.006) for liability to clinical mastitis and 0.070 (0.003) for SCS. The posterior mean (standard deviation) of the genetic correlation between liability to clinical mastitis and SCS was 0.62 (0.03). A comparison of sire evaluations showed that genetic evaluation based on SCS was not able to identify the best sires for liability to clinical mastitis. The association between sire posterior means for liability to clinical mastitis and sire predicted transmitting ability for SCS was far from perfect.