Discrimination of soil-borne fungi using fourier transform infrared attenuated total reflection spectroscopy

Fourier transform infrared (FT-IR) attenuated total reflection (ATR) spectroscopy was used to discriminate five commonly encountered soil-borne fungi that cause severe economic damage to agriculture: Colletotrichum, Fusarium, Pythium, Rhizoctonia, and Verticillium. Contrary to previous studies related to microorganism discrimination using FT-IR-ATR spectroscopy, the pathogen samples were not dried on the ATR crystal, which is a time-consuming operation. Rather, after removing some pathogen filaments from the solution using tweezers, these were placed directly on a flat ATR crystal and pressure was applied using a pressure clamp. Following water subtraction, baseline correction, and normalization of the spectra, principal component analysis was used as a data-reduction step and canonical variate analysis was used for discrimination. Discrimination was performed at the genus level and at the strain level for Colletotrichum. For discrimination between the five fungi at the genus level, the success rate for the validation samples ranged from 75% to 89%. For discrimination between the two Colletotrichum strains, the success rate was 78%. Comparison with spectra of similar fungi dried on the ATR crystal showed that both types of spectra were very similar, indicating that drying the samples on the ATR crystal is not required and can be replaced by mathematical post-processing of the spectra. For routine analyses that involve rapid screening of very large amounts of samples, this approach allows for increasing significantly the number of samples that can be analyzed daily.     

Rapid nondestructive on-site screening of methylamphetamine seizures by attenuated total reflection fourier transform infrared spectroscopy

The identification and quantification of illicit substances in the field is often desirable. Fourier transform infrared spectroscopy (FT-IR) has both qualitative and quantitative capabilities and field portable instruments are commercially available. Transmission infrared spectra of mixtures containing ephedrine hydrochloride, glucose, and caffeine and attenuated total reflection (ATR) infrared spectra of mixtures composed of methylamphetamine hydrochloride, glucose, and caffeine were used to develop principal component regression (PCR) calibration models. The root mean sum of errors of predictions (RMSEP) of all individual components in a mixture from a single measurement was <6% w/w, which reduced to approximately 3% w/w when triplicates were averaged. Sample mixing and grinding are essential to minimize the effect of heterogeneity, as deviations of up to 20% w/w were observed for single measurements of unground samples. Poor predictions of the components in a mixture occurred when samples were "contaminated" with substances not present in the calibration set, as would be expected. When only a single analyte (drug) was targeted, using a calibration set that contained both contaminated and uncontaminated samples, an RMSEP of approximately 4% w/w was achieved. The results demonstrate that ATR-FT-IR has the potential to quantify methylamphetamine samples, and possibly other licit or illicit substances, in at-seizure and on-site scenarios.     

Electric-field-induced reorientation of liquid crystalline p-cyanophenyl-p-n-alkylbenzoates: a time-resolved study by fourier transform infrared transmission and attenuated total reflection spectroscopy

Time-resolved polarization Fourier transform infrared (FT-IR) transmission and attenuated total reflection (ATR) spectroscopy were applied to investigate the reorientation phenomena of the three members of the homologous series of nematic liquid crystalline p-cyanophenyl-p-n-alkylbenzoates 6CPB, 7CPB, and 10CPB under the external perturbation of an electric field. In conjunction with a newly constructed measurement cell, this method allowed us to differentiate the response of the LC system in the surface layer and in the bulk of the cell at different temperatures and voltages. The relaxation time of the LC molecules close to the wall of the cell was found to be shorter than in the bulk. However, at a field strength of 7 V, the initial orientation in the bulk preceeds the analogous process in the surface region.     

Monitoring 2-ethylhexyl-4-methoxycinnamate photoisomerization on skin using attenuated total reflection fourier transform infrared spectroscopy

Photoisomerization and photodimerization of a widely used UVB filter, 2-ethylhexy-4-methoxycinnamate (EHMC) on a ZnSe surface and baby mouse (Mus musculus Linn.) skin were monitored using attenuated total reflection Fourier transform infrared spectroscopy (ATR-FT-IR). Differentiation between the E- and the Z-EHMC could be achieved by examining the infrared (IR) peak at 981 cm(-1) (b peak), which corresponds to the CH rocking deformation vibration of Ph-CH=CH- detected only in the E configuration. By plotting the ratios of the peak area of the b peak and an internal standard peak (1060-998 cm(-1)) against mole percentage of Z-isomer in the E-Z mixtures, a linear calibration plot was obtained. Thus, a simple estimation of the mole percentage of each configuration in a sample was obtained. At the same UVB exposure, photostationary equilibrium of the E/Z isomerization on the surface varied with the applied amounts of EHMC. Photoisomerizations on ZnSe and on baby mouse skin were comparable. Less than 10% of E-EHMC changed configuration when the mouse skins applied with 1.0-4.0 mg/cm(2) E-EHMC were exposed to sunlight for 60 min (UVB radiant exposure of approximately 0.30 J/cm(2)). This corresponded to less than 5% loss in UV filtering efficiency. However, at a typical EHMC skin coverage ( approximately 0.2 mg/cm(2)), 0.30 J/cm(2) UVB exposure induced approximately 50% photoisomerization resulting in 25% loss of UV filtering efficiency. No photodimerization was detected even at the extreme EHMC coverage of 4.0 mg/cm(2) after a UVB exposure of 0.90 J/cm(2).     

Monitoring the thermal gelation of cellulose ethers in situ using attenuated total reflectance fourier transform infrared spectroscopy

In this work attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy was used to probe the thermal gelation behavior of aqueous solutions of hydroxypropyl methylcellulose (HPMC), specifically thermal gelation and accompanying precipitation. Cloud point measurements are usually evaluated through turbidity in dilute solutions but the method cannot readily be applied to more concentrated or highly viscous solutions. From the ATR-FTIR data, intensity changes of the nu(CO) band marked the onset of gelation and information about the temperature of gelation and the effect of the gel structure on the water hydrogen bonding network was elucidated. Changes in the relative intensities of bands associated with the methoxyl groups and hydrogen-bond-forming secondary alcohol groups indicated that hydrophobic polymer chain interactions were involved in the gelation process. The dominance of inter-molecular H bonding over intra-molecular H bonding within the cellulose ether in solution was also observed. The ATR-FTIR data was in good agreement with measurements of turbidity conducted on the same systems. The work indicates significant potential for the use of ATR-FTIR for the investigation of gelation and cloud point measurements in viscous cellulosic formulations.     

Characterization of infrared matrix-assisted laser desorption ionization samples by Fourier transform infrared attenuated total reflection spectroscopy

Fourier transform infrared attenuated total reflection (FT-IR ATR) spectroscopy was used to characterize thin films of succinic acid, a matrix compound commonly used with infrared matrix-assisted laser desorption ionization (IR-MALDI) mass spectrometry. IR spectra of succinic acid thin films deposited alone and in combination with the analyte biomolecules insulin and cytochrome c were obtained by FT-IR ATR spectroscopy. Spectra of analyte and matrix alone were similar to those obtained previously from KBr pellets, Nujol mull, or thin-film absorption, although the ATR spectra have significantly lower background interferences. Thin films deposited from mixtures of water and methanol have additional peaks compared to films deposited from a methanol solution. These additional peaks are attributed to carboxylate groups stabilized by residual water molecules. No evidence was found to suggest that residual water absorption contributes to absorption at wavelengths typically used for IR-MALDI. Absorption of energy by analyte vibrational modes with rapid energy transfer to the matrix is suggested as a contributor to desorption and ionization consistent with the FT-IR ATR results.     

Trace level organics in hydrofluoric Acid determined by attenuated total internal reflection infrared spectroscopy

Trace levels of organic impurities in the hydrofluoric acid solutions were measured by a multiple internal reflection infrared spectroscopic (MIRIS) technique. The MIRIS utilizes a clean attenuated total reflection (ATR) silicon crystal to extract organic impurities from the HF solutions. An open beam single-channel background spectrum combined with statistical analysis was used to ensure the reproducibility of absorbed organics measurement. The hydrofluoric acid samples were analyzed under an ultrapure nitrogen blanket to avoid airborne organics interferences. The adsorbed organic contaminants were found to randomly orient on the silicon ATR probe surface. A higher level of organic impurities was found in the more concentrated hydrofluoric acid solutions.     

Characterization and quantitation of aprepitant drug substance polymorphs by attenuated total reflectance fourier transform infrared spectroscopy

In this study, we report the use of attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FT-IR) for the identification and quantitation of two polymorphs of Aprepitant, a substance P antagonist for chemotherapy-induced emesis. Mixtures of the polymorph pair were prepared by weight and ATR-FT-IR spectra of the powdered samples were obtained over the wavelength range of 700-1500 cm(-1). Significant spectral differences between the two polymorphs at 1140 cm(-1) show that ATR-FT-IR can provide definitive identification of the polymorphs. To investigate the feasibility of ATR-FT-IR for quantitation of polymorphic forms of Aprepitant, a calibration plot was constructed with known mixtures of the two polymorphs by plotting the peak ratio of the second derivative of absorbance spectra against the weight percent of form II in the polymorphic mixture. Using this novel approach, 3 wt % of one crystal form could be detected in mixtures of the two polymorphs. The accuracy of ATR-FT-IR in determining polymorph purity of the drug substance was tested by comparing the results with those obtained by X-ray powder diffractometry (XRPD). Indeed, polymorphic purity results obtained by ATR-FT-IR were found to be in good agreement with the predictions made by XRPD and compared favorably with actual values in the known mixtures. The present study clearly demonstrates the potential of ATR-FT-IR as a quick, easy, and inexpensive alternative to XRPD for the determination of polymorphic identity and purity of solid drug substances. The technique is ideally suited for polymorph analysis, because it is precise, accurate, and requires minimal sample preparation.     

Single-pass attenuated total reflection Fourier transform infrared spectroscopy for the analysis of proteins in H2O solution

The application of single-pass attenuated total reflection Fourier transform infrared (ATR-FT-IR) microscopy was investigated for secondary structure analysis of 15 representative proteins in H2O solution. This is the first reported application of single-pass ATR-FT-IR for protein analysis; thus, the method was validated using transmission FT-IR and multipass ATR-FT-IR as referee methods. The single-pass ATR-FT-IR technique was advantageous since the single-pass geometry permits rapid secondary structure analysis on small volumes of protein in H2O solution without the use of demountable thin path length sample cells. Moreover, the fact that H2O backgrounds were small allowed the simultaneous observation of the amide I-III, A, and B regions without having to perform H2O subtraction. A comparison of replicate protein spectra indicated that the single-pass ATR-FT-IR method yields more reproducible data than those acquired by transmission FT-IR. The observed trends for the amide I-III and A bands obtained by single-pass ATR-FT-IR agreed with those in the literature for conventional transmission FT-IR.     

Absolute configuration modulation attenuated total reflection ir spectroscopy: an in situ method for probing chiral recognition in liquid chromatography

A method to selectively probe the different adsorption of enantiomers at chiral solid-liquid interfaces is applied, which combines attenuated total reflection infrared spectroscopy and modulation spectroscopy. The spectral changes on the surface are followed while the absolute configuration of the adsorbate is changed periodically. Demodulated spectra are calculated by performing a subsequent digital phase-sensitive data analysis. The method is sensitive solely to the difference of the interaction of the two enantiomers with the chiral surface, and the small spectral changes are amplified by the phase-sensitive data analysis. Its potential is demonstrated by investigating an already well-studied system in liquid chromatography, namely, the enantiomer separation of N-3,5-dinitrobenzoyl-(R,S)-leucine (DNB-(R,S)-Leu) using tert-butylcarbamoyl quinine (tBuCQN) as the chiral selector immobilized on the surface of porous silica particles. The performed experiments and density functional theory calculations confirm an interaction model that was proposed earlier based on solution NMR and XRD in the solid state. It emerges that the ionic interaction is the strongest one, but the main reason for the potential for enantioseparation of the chiral stationary phase (CSP) is the distinct formation of a hydrogen bond of the (S)-enantiomer with the chiral selector. This H-bond is established between the amide N-H of DNB-(S)-Leu with the carbamate C=O of the CSP. The (R)-enantiomer instead shows no specific hydrogen bonds. Only the unspecific ionic bonding between the protonated quinine part of the tBuCQN and the carboxylate of the DNB-(R)-Leu (holds also for DNB-(S)-Leu) is observed.     

Modifying the adsorption behavior of polyamidoamine dendrimers at silica surfaces investigated by total internal reflection fluorescence correlation spectroscopy

Polyamidoamine (PAMAM) dendrimers were modified and tested for use as solution-phase diffusion probes in silica nanostructures. In order for the successful application of dendrimers as solution-phase probes, their interactions with silica surfaces must be understood and controlled, so that the motion of the probe is not influenced by adsorption. Adsorption/desorption kinetics of PAMAM dendrimers and their diffusion in solution near silica surfaces were investigated with total internal reflection fluorescence correlation spectroscopy (TIR-FCS). Dendrimers of generations 3, 5, and 7 were dye-labeled with carboxyrhodamine 6G. Because PAMAM dendrimers are positively charged in solution (having primary amines as end groups), significant adsorption of these molecules to the negatively charged silica surface was observed. Adsorption/desorption rates and the equilibrium constant for adsorption were determined by fitting the autocorrelation functions to a kinetic model. The desorption rate decreases and the absorption equilibrium constant increases with higher dendrimer generation. To reduce the adsorption of these probes to silica surfaces, the labeled dendrimers were reacted with succinic anhydride, converting the primary amine end groups to negatively charged carboxylic acid groups. These carboxylated dendrimers did not detectably adsorb to silica from aqueous solution. TIR-FCS was used to determine their free-solution diffusion constants near silica surfaces, and the corresponding hydrodynamic radii compare favorably with values reported from forced Rayleigh scattering measurements.     

Total internal reflection fluorescence correlation spectroscopy for counting molecules at solid/liquid interfaces

Fluorescence correlation spectroscopy, using tota internal reflection excitation (TIRFCS), is developed as a method to allow quantitative determination of molecular populations at solid/liquid interfaces. Population fluctuations of fluorescent molecules at the interface are observed as excess low-frequency noise on a fluorescence signal. Since the noise arises from molecular origins, its magnitude can be evaluated by Poisson statistics to determine the number of molecules in the interface volume. This quantitative information is available without sensitivity calibration or the preparation of standards and without fitting the transients to a kinetic model. Unlike single-molecule counting measurements, TIRFCS can produce these quantitative results even when the number of photoelectrons detected per molecule is small. Surface populations of rhodamine 6G dye molecules were measured at C-18-derivatized, flat silica surfaces in contact with aqueous solutions and compared with predicted values derived from chromatographic retention data. In addition, electrostatic and nonpolar contributions to the free energy of adsorption of the dye to C-18-modified silica surfaces were examined.     

Multivariate determination of glucose in whole blood by attenuated total reflection infrared spectroscopy

A spectral analysis of whole EDTA blood was undertaken by using attenuated total reflection and Fourier-transform infrared spectroscopy. The concentration of blood glucose was measured by an enzymatic method using glucose dehydrogenase and ranged between 40 and 290 mg/dL with an average concentration of 90.4 mg/dL. Multivariate calibration with the partial least-squares (PLS) algorithm was performed on spectral data between 1500 and 750 cm-1 showing a varying background from different unidentified interfering compounds. Cross validation was carried out for optimizing the PLS model. PRESS was 19.8 mg/dL, which was calculated on the basis of 127 standards, whereas the estimated standard deviation for the calibration fit was computed to be 11.9 mg/dL. Infrared spectroscopy can be used for monitoring glucose levels within the normal physiological range in a complex matrix like whole blood as an alternative to electrochemical sensors.     

Attenuated total reflection fourier transform infrared spectroscopy to investigate water uptake and phase transitions in atmospherically relevant particles

In this study, attenuated total reflection Fourier transform infrared (ATR-FT-IR) spectroscopy is used to investigate water uptake and phase transitions for atmospherically relevant particles. Changes in the ATR-FT-IR spectra of NaCl, NH(4) NO(3), (NH(4))(2)SO(4), Ca(NO(3))(2), and SiO(2) as a function of relative humidity (RH) are presented and discussed. For these various particles, water can (1) become adsorbed on the particle surface; and/or (2) become absorbed in the particle structure to form a hydrate salt; and/or (3) become absorbed by the particle to form a liquid solution. Spectral features and analyses that distinguish these various processes are discussed. For the salts that do undergo a solid to liquid phase transition (deliquescence), excellent agreement is found between the measurements made here with ATR-FT-IR spectroscopy, a relatively simple, inexpensive, and readily available analytical tool, compared to more expensive, elaborate aerosol flow reactor systems using tandem differential mobility analyzers. In addition, for particles that adsorb water, we show here the utility of coupling ATR-FT-IR measurements with simultaneous quartz crystal microbalance (QCM) measurements. This coupling allows for the quantification of the amount of water associated with the particle as a function of relative humidity (f(RH)) along with the spectroscopic data.     

Water diffusion and sorption-induced swelling as a function of temperature and ethylene content in ethylene-vinyl alcohol copolymers as determined by attenuated total reflection fourier transform infrared spectroscopy

Attenuated total reflection Fourier transform infrared (ATR-FT-IR) spectroscopy has been advantageously used to carry out a simultaneous study of the effect of temperature on sorption, diffusion, swelling rate, and swelling rate factor of ethylene-vinyl alcohol (EVOH) cast films with three different ethylene contents (29, 38, and 44 mol % of ethylene). While the sorption and swelling levels at equilibrium did not appear to be affected by temperature in the temperature range studied, the effect of increasing ethylene content was seen to largely decrease the sorption-induced swelling. It should be noted that all samples showed significant levels of swelling ( approximately 60% in the copolymer with lowest ethylene content), suggesting that films obtained by solution-casting generate polymer morphologies that are far more prone to uptake water than typical melt-extruded ones. It was also observed that increasing the ethylene content led to a reduction of the "effective" D value, while raising the temperature increased diffusion and swelling rate factor. The activation energies obtained for the diffusion of water were relatively low and similar to the typical energy barrier required to break hydrogen bonding interactions, suggesting that water molecules diffuse very easily across the film due to its high chemical affinity with the polymer matrix.     

In situ real-time diffuse reflection infrared Fourier transform spectroscopy (DRIFTS) study of hydrogen adsorption and desorption on Ir/SiO2 catalyst

The adsorption and desorption of hydrogen on Ir/SiO(2) catalyst were studied by using in situ diffuse reflection infrared Fourier transform spectroscopy (DRIFTS) combined with curve-fitting analysis. The results indicate that there are three different surface species formed on the catalyst that correspond to the peaks at 1950, 2010, and 2035 cm(-1), respectively, when exposed in H(2) flow at 130 °C. These surface species display different adsorption and desorption trends. Surface hydride forms after the catalyst is cooled to 80 °C and it disappears after the catalyst is heated to 130 °C again. This study may help us understand the interaction between hydrogen and noble metals and thus give more insights to heterogeneous catalytic mechanism involving hydrogen and hydrogen storage using metal materials.     

Cell discrimination by attenuated total reflection-Fourier transform infrared spectroscopy: the impact of preprocessing of spectra

Fourier transform infrared (FT-IR) spectroscopy has become a powerful tool for biodiagnostics and cell line classification. Typical experimental perturbations included in spectra are baseline shift and scale variation between spectra. They have to be removed by data preprocessings to allow further data analysis and classification. In this work, we addressed baseline shift corrections and normalizations in attenuated total reflection (ATR) FT-IR spectra. We compared the efficiency of several preprocessing methods with series of spectra containing typical perturbations (baseline shift, scaling factor, and noise) and a priori known definite spectral difference. Several baseline-correction and normalization possibilities were evaluated. Our results were generally sensitive, selective, and robust with respect to baseline and scaling. Full-range scaling generated more false-positive results. Use of first- and second-derivative spectra was tested. Results obtained on model spectra were confirmed with series of spectra from sensitive and multidrug-resistant leukemia K562 cells. We showed that the use of derived spectra did not provide more efficiency and required additional preprocessing such as smoothing to obtain results similar to those obtained from non-derived ones. On the other hand, results obtained with derivatives were less sensitive to scaling, a useful feature when scaling is problematic.     

Detection of reversible nonlinear dynamic responses of polymer films by using time-resolved soft-pulse compression attenuated total reflection step-scan Fourier transform infrared spectroscopy

An improved time-resolved soft-pulse dynamic compression attenuated total reflection (ATR) step-scan Fourier transform rheo-optical system has been developed. This system was used to observe reversible dynamic responses of poly(ethyleneterephthalate) (PET) and poly(p-phenylene biphenyltetracarboximide) (BPDA-PDA) films. In the case of PET, reversible nonlinear dynamic responses were observed in the C=O stretching vibration. The nonlinear responses decreased with decreasing compressive strain from 0.045 to 0.018. For the C-O stretching bands associated with the backbone structure of the PET, the nonlinear responses were very small. Characteristic burst-like reversible nonlinear dynamic responses can be seen in the in-phase and out-of-phase C=O stretching vibrations of cyclic imides, and phenyl ring deformation bands in the PDA parts of the BPDA-PDA. The results suggest the presence of inter-molecular interaction between C=O of cyclic imides and the phenyl ring groups of the PDA parts. The present method shows promise for characterizing a wide variety of polymeric materials, including polymer alloys, blends, composites, and copolymers and semicrystalline polymers.