The 2017 African Great Lakes Conference: Conservation and development in a changing climate

In May 2017, the African Great Lakes community convened for a region-wide conference in Entebbe, Uganda. The African Great Lakes Conference (AGLC) focused on 6 regionally-important themes, and 300+ attendees presented over 100 talks and posters. The AGLC culminated in the adoption of a set of Conference Resolutions designed to direct the future of African Great Lakes conservation and management. As an Introduction to this Journal of Great Lakes Research special section on African Great Lakes, we report on the impetus for the African Great Lakes Conference as well as discuss three major advances and investments that were a direct result of conference resolutions adopted at the meeting. First, we present the AGLC Resolutions, a set of management issues and solutions developed at the conference. Second, we discuss the African Great Lakes Conference Fund, a conservation fund that has awarded $500,000 USD to launch four new initiatives. Finally, we describe African Great Lakes Inform, a knowledge management platform designed to promote collaboration in the region. The AGLC in general, and these three major conference outcomes specifically, provide a set of basic building blocks to advance partnerships, research and capacity in the African Great Lakes region.     

Metrics of ecosystem status for large aquatic systems – A global comparison

We identified an objective set of 25 commonly available ecosystem metrics applicable across the world's large continental freshwater and brackish aquatic ecosystem. These metrics measure trophic structure, exploited species, habitat alteration, and catchment changes. We used long-term trends in these metrics as indicators of perturbations that represent an ecosystem not in homeostasis. We defined a healthy ecosystem as being in a homeostatic state; therefore, ecosystems with many changing trends were defined as more disturbed than ecosystems with fewer changing trends. Healthy ecosystems (lakes Baikal, Superior, and Tanganyika) were large, deep lakes in relatively unpopulated areas with no signs of eutrophication and no changes to their trophic structure. Disturbed ecosystems (lakes Michigan, Ontario, and Victoria) had shallow to moderately deep basins with high watershed population pressure and intense agricultural and residential land use. Transitioning systems had widely varying trends and faced increasing anthropogenic pressures. Standardized methodologies for capturing data could improve our understanding of the current state of these ecosystems and allow for comparisons of the response of large aquatic ecosystems to local and global stressors thereby providing more reliable insights into future changes in ecosystem health.     

Spatial and temporal variation in distribution of larval lake whitefish in eastern Lake Ontario: Signs of recovery?

The lake whitefish (Coregonus clupeaformis) is one of the native Lake Ontario fishes that declined severely over the past century. Recent evidence of larval lake whitefish production in a historic spawning area (Chaumont Bay) might signal a recovery of this species in New York waters. We surveyed coastal and open water areas to evaluate densities and estimate total abundance of larval lake whitefish in Chaumont Bay. Other historic spawning areas and embayments with appropriate spawning and nursery habitat were also surveyed, but only a few larvae were found outside of Chaumont Bay. Lake whitefish larvae were found in every embayment sampled within Chaumont Bay, with larval densities of nearly 600/1000 m² in some samples. Greatest abundances occurred in the northern sectors and near the mouth of the bay. Open water densities were generally less than half that of nearshore sites. The total bay-wide estimate for 2005 was approximately 644,000 lake whitefish larvae, but dropped to 230,000–400,000 in 2006 and 2007, respectively. Mean larval growth rates (0.36 mm/day) did not differ by year, but were consistently higher in early May than in late April. Lake whitefish production in Chaumont Bay is encouraging for this species, but the cause and persistence of the decline after 2005 can be determined only by continued monitoring. Other possible bottlenecks of survival may exist at juvenile and adult stages and could significantly affect recruitment dynamics. This species is sensitive to normal climatic fluctuations and increased variability associated with global climatic change could make winter nursery conditions unfavorable for this species.     

Ichthyoplankton Assemblages of Coastal West-Central Lake Erie and Associated Habitat Characteristics

Early life stage survival often determines fish cohort strength and that survival is affected by habitat conditions. The structure and dynamics of ichthyoplankton assemblages can tell us much about biodiversity and fish population dynamics, but are poorly understood in nearshore areas of the Great Lakes, where most spawning and nursery habitats exist. Ichthyoplankton samples were collected with a neuston net in waters 2–13 m deep weekly or biweekly from mid-April through August, during 3 years (2000–2002) as part of a study of fish assemblages in west-central Lake Erie. A suite of abiotic variables was simultaneously measured to characterize habitat. Cluster and ordination analyses revealed several distinct ichthyoplankton assemblages that changed seasonally. A lake whitefish (Coregonus clupeaformis) dominated assemblage appeared first in April. In May, assemblages were dominated by several percid species. Summer assemblages were overwhelmingly dominated by emerald shiner (Notropis atherinoides), with large gizzard shad (Dorosoma cepedianum) and alewife (Alosa pseudoharengus) components. This seasonal trend in species assemblages was also associated with increasing temperature and water clarity. Water depth and drift processes may also play a role in structuring these assemblages. The most common and widely distributed assemblages were not associated with substratum type, which we characterized as either hard or soft. The timing of hatch and larval growth separated the major groups in time and may have adaptive significance for the members of each major assemblage. The quality and locations (with reference to lake circulation) of spawning and nursery grounds may determine larval success and affect year class strength.     

Life Cycle of a Mayfly Hexagenia Limbata in the St. Marys River Between Lakes Superior and Huron

Length-frequency distribution curves of Hexagenia limbata nymphs collected in May, August, and October 1974 and May 1975 in the St. Marys River between Lakes Superior and Huron were bimodal for each sampling period. These curves, combined with interpretation of nymphal emergence period and mean surface water temperatures, indicate that the population of Hexagenia nymphs in the St. Marys River is composed of two year classes or cohorts. One cohort emerges per season, 2 years after egg deposition.     

What lies beneath? Fungal diversity at the bottom of Lake Michigan and Lake Superior

Fungi are phylogenetically diverse organisms found in nearly every environment as key contributors to the processes of nutrient cycling and decomposition. To date, most fungal diversity has been documented from terrestrial habitats leaving aquatic habitats underexplored. In particular, comparatively little is known about fungi inhabiting freshwater lakes, particularly the benthic zone, which may serve as an untapped resource for fungal biodiversity. Advances in technology allowing for direct sequencing of DNA from environmental samples provide a new opportunity to investigate freshwater benthic fungi. In this study, we employed both culture-dependent and culture-independent methods to evaluate the diversity of fungi in one of the largest freshwater systems on Earth, the North American Laurentian Great Lakes. This study presents the first comprehensive survey of fungi from sediment from Lake Michigan and Lake Superior, resulting in 465 fungal taxa with only 7% of sequence overlap between these two methods. Additionally, culture-independent analyses of the ITS1 and ITS2 regions revealed 49% and 72%, respectively, of the OTUs did not match a described fungal taxonomic group below kingdom Fungi. The low level of sequence overlap between methods and high percentage of fungal taxa that can only be classified at the kingdom level suggests an immense amount of fungal diversity remains to be studied in these aquatic fungal communities.     

The past is a key to the future: Lessons paleoecological data can provide for management of the African Great Lakes

Rapid ecological changes in the African Great Lakes (AGL) present lake managers with extraordinary challenges to understand the changes' underlying causes and forecast what they portend for the future. Monitoring and experimental data from the AGL are essential but are limited in duration and continuity. The magnitude of change suggests that a centennial-millennial timescale perspective is needed to identify drivers of change and prepare for changes yet to come. In this review I propose that paleoecological and paleolimnological approaches can provide this perspective.AGL paleorecords have documented the impacts of excess sedimentation, external nutrient loading, and climate change, and can demonstrate the specific ecosystem responses associated with these various drivers. Paleorecords can help us understand how multiple stressors interact and in some cases can falsify specific cause-and-effect hypotheses when the putative causes can be shown to have occurred after the effect started.The number of useful AGL paleorecords is still quite small. Replication is needed to test if patterns seen and hypotheses inferred from single localities are robust for an entire lake, and to understand regional variability within and between lakes. Because many paleorecord methods are quite inexpensive it would be highly desirable if these approaches were incorporated into the routine tool kit of local AGL scientists working in tandem with fisheries and water-quality scientists. Training African lake scientists and conservation biologists to analyze paleorecords should be a high priority for AGL stakeholders interested in the long-term prognoses for the economic and biodiversity resources that they oversee.     

Revisiting the Great Lakes Water Quality Agreement phosphorus targets and predicting the trophic status of Lake Michigan

LM3-Eutro is a high-resolution eutrophication model with several improved features lacking in historical Great Lakes models. We calibrated LM3-Eutro using a 2-year (1994-1995) dataset and performed a hindcast simulation from 1976 to 1995 to evaluate the model's ability to make predictions over an extended period of time. Results show a reasonable agreement between model output and field data over this time period. The model predicted that an annual loading of 5600 metric tons (MT) would result in a lake-wide annual total phosphorus (TP) concentration of 7.5 μg L^− 1. Using best estimates of future TP loadings, LM3-Eutro forecasts suggest that Lake Michigan will remain oligotrophic and will continue to meet the 7 μg L^− 1 spring TP concentration Great Lakes Water Quality Agreement objective.     

Advancing Africa’s Great Lakes research and academic potential: Answering the call for harmonized,long-term,collaborative networks and partnerships

The African Great Lakes (AGL) have rich fisheries and are renowned “biodiversity hotspots”. Consequently the AGL and the ecosystem services they provide, underpin the welfare and livelihoods of over 50 million people across 10 countries. Despite the recognized importance of the AGL, these vital ecosystems and their livelihood support systems are threatened by numerous anthropogenic stressors at local, regional, and global scales. Past and continued efforts to address critical challenges on these lakes are often short-term, parochial, disparate, and uncoordinated resulting in a lack of comprehensive and comparable scientific data and inadequate resources to influence evidence-based policy. Over the past two decades, several international workshops, conferences and scientific publications have identified the need for collaboration, knowledge sharing, and harmonization of research and management as key elements to enhance conservation efforts in the AGL. In this commentary, we introduce the African Center for Aquatic Research and Education (ACARE), which aims to strengthen research and provide the scientific evidence needed to make informed decisions related to sustainable fisheries and aquatic resource management in the AGL. To do this, ACARE will administer a highly collaborative network of experts with three long-term goals: (1) strengthen global and regional research partnerships; (2) establish transboundary and inter-jurisdictional lake advisory groups; and (3) build capacity of freshwater scientists through experiential education and public engagement.     

Spatial and temporal variations of dissolved CO2, CH4 and N2O in Lakes Edward and George (East Africa)

We report dissolved CO₂, CH₄ and N₂O concentrations in two large East African lakes, Edward (surface area 2,325 km², average depth of 37 m) and George (surface area 273 km², average depth of 2 m). Lake George showed modest seasonal and spatial variations, and lower partial pressure of CO₂ (pCO₂) (26 ± 16 ppm, mean ± standard deviation), CH₄ (234 ± 208 nmol/L) and N₂O saturation levels (%N₂O) (80 ± 9 %) than Lake Edward (404 ± 145 ppm, 357 ± 483 nmol/L, 139 ± 222 %). Surface waters in both lakes were over-saturated in CH₄, and Lake George was under-saturated in CO₂ while Lake Edward was slightly over-saturated in CO₂. This difference was related to higher phytoplankton biomass in Lake George than Lake Edward, with average chlorophyll-a concentrations of 177 ± 125 and 18 ± 25 µg/L, respectively. Permanent high cyanobacterial biomass in Lake George led to uniform dissolved CO₂, CH₄ and N₂O concentrations. In surface waters of Lake Edward, spatial variations of pCO₂, CH₄ and N₂O were related to bottom depth, and locally (in particular in Katwe Bay) also related to the inputs of water from Lake George via the Kazinga Channel, a 40-km natural channel connecting the lakes. Short-term mixing events related to storms increased CO₂, CH₄ and N₂O content in surface waters, in particular for CH₄ and N₂O. This indicates that mixing events in response to storms can create ‘hot moments’ for CH₄ and N₂O emissions to the atmosphere in tropical lakes, given the weaker vertical density gradients compared to higher latitude systems.     

Fatty acids in ten species of fish commonly consumed by the Anishinaabe of the upper Great Lakes

The Chippewa Ottawa Resource Authority (CORA) in Sault Ste. Marie, Michigan, has been monitoring contaminant concentrations in the fillet portions of fish from the 1836 treaty-ceded waters of lakes Superior, Huron, and Michigan since 1991. The goal is to provide up to date consumption advice for their CORA member tribes. For the first time since the program started, CORA has included fatty acid analysis in 2016 monitoring of fish in Lake Superior. Ten species were targeted by CORA based on 25 years of experience and regular discussions with Anishinaabe fish consumers. This paper reports these results and presents some preliminary discussion of the consequences for consumption advice for the CORA member tribes who inhabit the Great Lakes region. Six of the species were sampled from Lake Huron and Lake Superior and four were sampled from supermarkets. Wild caught fish are an important link to the culture of Great Lakes Native American tribes and important sources of food and omega-3 polyunsaturated fatty acids (PUFA N-3). While some PUFA N-3 data from the Great Lakes is available, this dataset provides an important supplement and is specific to the 1836-treaty ceded waters of CORA. This paper confirms the presence of PUFA N-3s in Great Lakes fish traditionally harvested by the CORA tribes.