Investigating the structural evolution of thiolate protected gold clusters from first-principles

Unlike bulk materials, the physicochemical properties of nano-sized metal clusters can be strongly dependent on their atomic structure and size. Over the past two decades, major progress has been made in both the synthesis and characterization of a special class of ligated metal nanoclusters, namely, the thiolate-protected gold clusters with size less than 2 nm. Nevertheless, the determination of the precise atomic structure of thiolate-protected gold clusters is still a grand challenge to both experimentalists and theorists. The lack of atomic structures for many thiolate-protected gold clusters has hampered our in-depth understanding of their physicochemical properties and size-dependent structural evolution. Recent breakthroughs in the determination of the atomic structure of two clusters, [Au(25)(SCH(2)CH(2)Ph)(18)](q) (q = -1, 0) and Au(102)(p-MBA)(44), from X-ray crystallography have uncovered many new characteristics regarding the gold-sulfur bonding as well as the atomic packing structure in gold thiolate nanoclusters. Knowledge obtained from the atomic structures of both thiolate-protected gold clusters allows researchers to examine a more general "inherent structure rule" underlying this special class of ligated gold nanoclusters. That is, a highly stable thiolate-protected gold cluster can be viewed as a combination of a highly symmetric Au core and several protecting gold-thiolate "staple motifs", as illustrated by a general structural formula [Au](a+a')[Au(SR)(2)](b)[Au(2)(SR)(3)](c)[Au(3)(SR)(4)](d)[Au(4)(SR)(5)](e) where a, a', b, c, d and e are integers that satisfy certain constraints. In this review article, we highlight recent progress in the theoretical exploration and prediction of the atomic structures of various thiolate-protected gold clusters based on the "divide-and-protect" concept in general and the "inherent structure rule" in particular. As two demonstration examples, we show that the theoretically predicted lowest-energy structures of Au(25)(SR)(8)(-) and Au(38)(SR)(24) (-R is the alkylthiolate group) have been fully confirmed by later experiments, lending credence to the "inherent structure rule".     

A photoresponsive Au25 nanocluster protected by azobenzene derivative thiolates

An Au(25) cluster protected by azobenzene derivative thiolates (S-Az) ([Au(25)(S-Az)(18)](-)) was synthesized with the aim of producing a photoresponsive Au(25) cluster. The matrix-assisted laser desorption/ionization mass spectrum of the product revealed that [Au(25)(S-Az)(18)](-) was synthesized in high purity. Optical absorption spectra of [Au(25)(S-Az)(18)](-) obtained before and after photoirradiation suggest that the azobenzenes in the ligands of Au(25)(S-Az)(18) isomerize with an efficiency of nearly 100%, both from the trans to cis conformation and from the cis to trans conformation. Furthermore, the redox potential and optical absorption of Au(25)(S-Az)(18) were found to change reversibly due to photoisomerization of azobenzenes.     

Ligand effects on the stability of thiol-stabilized gold nanoclusters: Au25(SR)18(-), Au38(SR)24, and Au102(SR)44

We have studied the electrochemical and thermodynamic stability of Au(25)(SR)(18)(-), Au(38)(SR)(24), and Au(102)(SR)(44), R = CH(3), C(6)H(13), CH(2)CH(2)Ph, Ph, PhF, and PhCOOH, in order to examine ligand effects on the stability of thiol-stabilized gold nanoclusters, Au(m)(SR)(n). Aliphatic thiols, in general, have higher electrochemical and thermodynamic stability than aromatic thiols, and the -SCH(2)CH(2)Ph thiol is particularly appealing because of its high electrochemical and thermodynamic stability. The stabilization of Au(m) by nSR for Au(m)(SR)(n) can be rationalized by the stabilization of an Au atom by an SR for the simple molecule AuSR, regardless of interligand interaction and system size and shape. Thiol moieties play a strong role in the electron oxidation and reduction of Au(m)(SR)(n). Accounting for the characteristics of thiol ligands is essential for understanding the electronic and thermodynamic stability of thiol-stabilized gold nanoclusters.     

AuAg alloy nanomolecules with 38 metal atoms

Au(38-n)Ag(n)(SCH(2)CH(2)Ph)(24) alloy nanomolecules were synthesized, purified and characterized by MALDI TOF mass spectrometry. Similar to 25 and unlike 144 metal atom count AuAg alloy nanomolecules, incorporation of Ag atoms here results in loss or smearing out of distinct UV-vis features. We propose that the short and long staples contain Au atoms, while the inner core consists of both Au and Ag atoms.     

Facile synthesis and optical properties of magic-number Au13 clusters

Synthesis of molecular gold clusters through a post-synthetic scheme involving HCl-promoted nuclearity convergence was examined with various phosphine ligands. Systematic studies with a series of bis(diphenylphosphino) ligands (Ph(2)P-(CH(2))(m)-PPh(2)) using electrospray ionization mass spectrometry (ESI-MS) and electronic absorption spectroscopy demonstrated that the use of dppp (m = 3), dppb (m = 4) and dpppe (m = 5) as the ligands resulted in the formation of [Au(13)P(8)Cl(4)](+) type clusters, whereas the [Au(13)P(10)Cl(2)](3+) type cluster was formed with dppe (m = 2). The cluster species did not survive the HCl treatment step when monophosphines PPh(3), PMe(2)Ph, and POct(3) were employed, but [Au(13)(POct(3))(8)Cl(4)](+) was isolated as a minor product in the NaBH(4) reduction of Au(POct(3))Cl in aqueous THF. Electronic absorption and photoluminescence studies of a series of Au(13) clusters revealed that their optical properties are highly dependent on the phosphine/chloride composition ratio, but are far less so on the phosphine structure.     

Electron transfer catalysis with monolayer protected Au(25) clusters

Au(25)L(18) (L = S(CH(2))(2)Ph) clusters were prepared and characterized. The resulting monodisperse clusters were reacted with bis(pentafluorobenzoyl) peroxide in dichloromethane to form Au(25)L(18)(+) quantitatively. The kinetics and thermodynamics of the corresponding electron transfer (ET) reactions were characterized via electrochemistry and thermochemical calculations. Au(25)L(18)(+) was used in homogeneous redox catalysis experiments with a series of sym-substituted benzoyl peroxides, including the above peroxide, bis(para-cyanobenzoyl) peroxide, dibenzoyl peroxide, and bis(para-methoxybenzoyl) peroxide. Peroxide dissociative ET was catalyzed using both the Au(25)L(18)/Au(25)L(18)(-) and the Au(25)L(18)(+)/Au(25)L(18) redox couples as redox mediators. Simulation of the CV curves led to determination of the ET rate constant (k(ET)) values for concerted dissociative ET to the peroxides. The ET free energy ΔG° could be estimated for all donor-acceptor combinations, leading to observation of a nice activation-driving force (log k(ET)vs.ΔG°) relationship. Comparison with the k(ET) obtained using a ferrocene-type donor with a formal potential similar to that of Au(25)L(18)/Au(25)L(18)(-) showed that the presence of the capping monolayer affects the ET rate rather significantly, which is attributed to the intrinsic nonadiabaticity of peroxide acceptors.     

Ag(I)(Et(2)PCH(2)CH(2)PPh(2))(2)]NO(3): An Antimitochondrial Silver Complex

The silver(I) complex [Ag(eppe)(2)]NO(3) (eppe = Et(2)PCH(2)CH(2)PPh(2)) is shown by X-ray crystallography to be tetrahedral with Ag - PEt(2) and Ag - P Ph(2) bond lengths of 2.482 and 2.518 A, respectively. The complex is selectively antimitochondrial and inhibits the growth of a number of yeast strains in non-fermentable media at concentrations as low as 2.5 muMu and induces the mitochondrial mutation petite The effect is largely reversed by the presence of aspirin. The complex is shown to be stable in the cell culture media and in the presence of glutathione, but readily reacts with disulfides of oxidized glutathione and serum albumin. Surprisingly, neither [Au(eppe)(2)]Cl nor [Au(eppe)(2)]Cl (dppe = Ph(2)PCH(2)CH(2)PPh(2)) showed any mitochondrial selectivity in the same screening protocol.     

Ligand-exchange synthesis of selenophenolate-capped Au25 nanoclusters

We report the synthesis and characterization of selenophenolate-capped 25-gold-atom nanoclusters via a ligand-exchange approach. In this method, phenylethanethiolate (PhCH(2)CH(2)S) capped Au(25) nanoclusters are utilized as the starting material, which is subject to ligand-exchange with selenophenol (PhSeH). The as-obtained cluster product is confirmed to be selenophenolate-protected Au(25) nanoclusters through characterization by electrospray ionization (ESI) and matrix-assisted laser desorption ionization mass spectrometry (MALDI-MS), thermogravimetric analysis (TGA), elemental analysis (EA), UV-Vis and (1)H/(13)C NMR spectroscopies. The ligand-exchange synthesis of [Au(25)(SePh)(18)](-)[(C(8)H(17))(4)N](+) nanoclusters demonstrates that the core size of gold nanoclusters is retained in the thiolate-to-selenolate exchange process and that the 18 surface thiolate ligands can be completely exchanged by selenophenolate, rather than giving rise to a mixed ligand shell on the cluster. The two types of Au(25)L(18) (L = thiolate or selenolate) nanoclusters also show some differences in stability and optical properties.     

Relaxation dynamics of Au25L18 nanoclusters studied by femtosecond time-resolved near infrared transient absorption spectroscopy

The relaxation dynamics of electronically excited [Au(25)(SR)(18)](q), where q = 0 or -1 and SR = S(CH(2))(2)Ph, were studied using femtosecond time-resolved transient absorption spectroscopy. Nanoclusters excited by 400 nm light were probed using temporally delayed broad-bandwidth continuum probe pulses. Continuum pulses were generated in both the visible and near infrared (NIR) spectral regions, providing access to a wide range of transient spectral features. The use of NIR probe pulses allowed the relaxation dynamics of the excited states located near the HOMO-LUMO energy gap to be monitored in the probe step via the sp ← LUMO and sp ← LUMO+1 transitions. These NIR measurements yielded excited state absorption (ESA) data that were much less congested than the typical visible transient spectrum. For the neutral nanocluster, the time-domain data were composed of three components: (1) a few-picosecond decay, (2) a slower decay taking a few hundred picoseconds and (3) a non-decaying plateau function. Component 1 reflected energy relaxation to semi-ring ligand states; component 2 was attributed to relaxation via a manifold of states located near the HOMO-LUMO energy gap. Component 3 arose from slow radiative recombination. The dynamics of the anion depended upon the identity of the excited state from which the particle was relaxing. The LUMO+1 state of the anion exhibited relaxation dynamics that were similar to those observed for the neutral nanocluster. By comparison, the time-domain data observed for the LUMO state contained only two components: (1) a 3.3 ± 0.2 ps decay and (2) a 5 ± 1 ns decay. The amplitude coefficients of each component were also analyzed. Taken together, the amplitude coefficients and lifetimes were indicative of an activation barrier located approximately 100 meV above the HOMO-LUMO energy gap, which mediated a previously unobserved excited state decay process for [Au(25)(SR)(18)](0). These data suggested that NIR ESA measurements will be instrumental in describing the relaxation processes of quantum-confined nanoclusters.     

Interaction of [Rh(2)(O(2)CCH(3))(4)(H(2)O)(2)] and [Rh(2)(O(2)CCH(OH)Ph)(2)(phen)(2)(H(2)O)(2)](O(2)C-CH(OH)Ph)(2) With Sulfhydryl Compounds and Ceruloplasmin

The interaction of binuclear rhodium(II) complexes [Rh(2)(OOCCH(3))(4)(H(2)O)(2)], [Rh(2){OOCCH(OH)Ph}(2)(phen)(2)(H(2)O)(2)] {OOCCH(OH)Ph}(2), [Rh(2)(OOCCH(3))(2)(bpy)(2)(H(2)O)(2)](OOCCH(3))(2) and [Rh(2)Cl(2)(OOCMe)(2)(bpy)(2)](3H(2)O) with ceruloplasmin, cysteine, glutathione and coenzyme A have been investigated using. UV-Vis and CD spectroscopies. The complexes containing phen or bpy at pH = 7.4 and 4.0 are readily reduced with sulfhydryl compounds, while rhodium(II) acetate is relatively stable in these conditions. Complex [Rh(2){OOCCH(OH)Ph}(2)(phen)(2)(H(2)O)(2)] strongly changes structure of ceruloplasmin leading to the decrease of of alpha-helix content and loss of oxidase activity.     

Antibacterial and Antifungal Activity of Zinc(II) Carboxylates With/Without N-Donor Organic Ligands

The antibacterial and antifungal activity of zinc(II) carboxylates with composition Zn(RCOO)(2)*nH(2)O(R =H-, CH(3) (-), CH(3)CH(2)CH(2) (-), (CH(3))(2)CH-, XCH(2) (-), X=Cl, Br, I, n=0 or 2), [ZnX(2)(Nia(+)CH(2)COO(-))(2)](Nia=nicotinamide, X=Cl, Br, I) and [Zn(XCH(2)COO)(2)(Caf)(2)]*2H(2)O (Car=caffeine, X=Cl, Br) is studied against bacterial strains Staphylococcus aureus, Escherichia coli and yeast Candida albicans. The structural types are assigned to the prepared compounds and the influence of (i) carboxylate chain length, (ii) substitution of hydrogen atom of carboxylate by halogen and (iii) presence of N-donor organic ligands on the biological activity is discussed.     

Water-soluble Au25(Capt)18 nanoclusters: synthesis, thermal stability, and optical properties

This work was motivated by the unsatisfactory stability of Au(25)(SG)(18) in solution under thermal conditions (e.g. 70-90 °C for DNA melting). Thus, we searched for a better, water-soluble thiol ligand. Herein, we report a one-pot synthesis and investigation of the stability and optical properties of captopril (abbreviated Capt)-protected Au(25)(Capt)(18) nanoclusters. The Au(25)(Capt)(18) (anionic, counterion: Na(+)) nanoclusters were formed via size focusing under ambient conditions. Significantly, Au(25)(Capt)(18) nanoclusters exhibit largely improved thermal stability compared to the glutathione (HSG) capped Au(25)(SG)(18). Both Au(25)(Capt)(18) and Au(25)(SG)(18) nanoclusters show fluorescence centered at ～700 nm. The chiral ligands (Capt, SG, as well as chirally modified phenylethanethiol (PET*)) give rise to distinct chiroptical features. The high thermal stability and distinct optical properties of Au(25)(Capt)(18) nanoclusters render this material quite promising for biological applications.     

The halogen analogs of thiolated gold nanoclusters

Is it possible to replace all the thiolates in a thiolated gold nanocluster with halogens while still maintaining the geometry and the electronic structure? In this work, we show from density functional theory that such halogen analogs of thiolated gold nanoclusters are highly likely. Using Au(25)X(18)(-) as an example, where X = F, Cl, Br, or I replaces -SR, we find that Au(25)Cl(18)(-) demonstrates a high similarity to Au(25)(SR)(18)(-) by showing Au-Cl distances, Cl-Au-Cl angles, band gap, and frontier orbitals similar to those in Au(25)(SR)(18)(-). DFT-based global minimization also indicates the energetic preference of staple formation for the Au(25)Cl(18)(-) cluster. The similarity between Au(m)(SR)(n) and Au(m)X(n) could be exploited to make viable Au(m)X(n) clusters and to predict structures for Au(m)(SR)(n).     

Surface decorated platinum carbonyl clusters

Four molecular Pt-carbonyl clusters decorated by Cd-Br fragments, i.e., [Pt(13)(CO)(12){Cd(5)(μ-Br)(5)Br(2)(dmf)(3)}(2)](2-) (1), [Pt(19)(CO)(17){Cd(5)(μ-Br)(5)Br(3)(Me(2)CO)(2)}{Cd(5)(μ-Br)(5)Br(Me(2)CO)(4)}](2-) (2), [H(2)Pt(26)(CO)(20)(CdBr)(12)](8-) (3) and [H(4)Pt(26)(CO)(20)(CdBr)(12)(PtBr)(x)](6-) (4) (x = 0-2), have been obtained from the reactions between [Pt(3n)(CO)(6n)](2-) (n = 2-6) and CdBr(2)·H(2)O in dmf at 120 °C. The structures of these molecular clusters with diameters of 1.5-2 nm have been determined by X-ray crystallography. Both 1 and 2 are composed of icosahedral or bis-icosahedral Pt-CO cores decorated on the surface by Cd-Br motifs, whereas 3 and 4 display a cubic close packed Pt(26)Cd(12) metal frame decorated by CO and Br ligands. An oversimplified and unifying approach to interpret the electron count of these surface decorated platinum carbonyl clusters is suggested, and extended to other low-valent organometallic clusters and Au-thiolate nanoclusters.     

Facile Routes to Manganese(II) Triflate Complexes

Manganese(II) chloride reacts with trimethylsilyl triflate (TMS(OTf) where OTf = (-)OSO(2)CF(3)) in a 1:1 mixture of acetonitrile and tetrahydrofuran, and after recrystallization affords the linear coordination polymer [Mn(II)(CH(3)CN)(2)(OTf)(2)](n). Each distorted octahedral manganese(II) center in the polymeric chain has trans-acetonitriles and the remaining equatorial coordination positions are occupied by the bridging triflate anions. Dissolving [Mn(II)(CH(3)CN)(2)(OTf)(2)](n) in equal volumes of acetonitrile and pyridine followed by recrystallization with diethyl ether yields trans-[Mn(II)(C(5)H(5)N)(4)(OTf)(2)]. The distorted octahedral geometry of the manganese center features monodentate trans-triflate anions and four equatorial pyridines. Exposure of either [Mn(II)(CH(3)CN)(2)(OTf)(2)](n) or [Mn(II)(C(5)H(5)N)(4)(OTf)(2)] to water readily gives [Mn(II)(H(2)O)(6)](OTf)(2). XRD reveals hydrogen-bonding interactions between the [Mn(II)(H(2)O)(6)](2+) cation and the triflate anion. All three of these species are easily crystallized and provide convenient sources of manganese(II) for further synthetic elaboration.     

Ligand K-edge X-ray absorption spectroscopy: a direct probe of ligand-metal covalency

Ligand K-edge X-ray absorption spectroscopy (XAS) is a new experimental probe of the covalency of a metal-ligand bond. The intensity of the ligand pre-edge feature is proportional to the mixing of ligand orbitals into the metal d orbitals. The methodology to determine covalencies in one-electron (hole) and many-electron systems is described and demonstrated for a series of metal tetrachlorides [MCl(4)](n)(-), metal tetrathiolates [M(SR)(4)](n)(-), and dimeric iron-sulfur (Fe-S) clusters [Fe(2)S(2)(SR)(4)](2-). It is then applied to blue Cu proteins, the Cu(A) site, hydrogen bonding in Fe-S clusters, and the delocalization behavior in [2Fe-2S] vs [4Fe-4S] clusters. The covalencies determined in these studies provide important electronic structure insight into function.     

Synthesis and Anti-Candida Activity of Cobalt(II) Complexes of Benzene-1,2-Dioxyacetic Acid (bdoaH(2)). X-Ray Crystal Structures of [Co(bdoa)(H(2)O)(3)] 3.5H(2)O and {[CO(phen)(3)](bdoa)}(2)24H(2)O (phen = 1,10-Phenanthroline)

Co(CH(3)CO(2))(2)4H(2)O reacts with benzene-1,2-dioxyacetic acid (bdoaH(2)) to give the Co(2+) complexes [Co(bdoa)(H(2)O)(3)]H(2)O (1a) and [Co(bdoa)(H(2)O)(3)] 3.5H(2)O (1b). Subsequent reaction of 1a with 1,10- phenanthroline produces [CO(phen)(3)] bdoa10H(2)O (2a) and {[CO(phen)(3)](bdoa)}(2)24H(2)O (2b). Molecular structures of 1b and 2b were determined crystallographically. In 1b the bdoa(2-)- ligates the metal by two carboxylate oxygens and two ethereal oxygens, whereas in 2b the bdoa(2-) is uncoordinated. The Mn(2+) and Cu(2+) complexes [Mn(bdoa)(phen)(2)]H(2)O (3) and [Cu(pdoa)(imid)(2)] (4) were also synthesised, 1a-4 and other metal complexes of bdoa H(2) (metal = Mn(2+), Co(2+) ,Cu(2+), Cu(+) ) were screened for their ability to inhibit the growth ofhe yeast Candida albicans. Complexes incorporating the 1,10-phenanthroline ligand were the most active.     

Au25(SG)18 as a fluorescent iodide sensor

The recently emerging gold nanoclusters (GNC) are of major importance for both basic science studies and practical applications. Based on its surface-induced fluorescence properties, we investigated the potential use of Au(25)(SG)(18) (GSH: glutathione) as a fluorescent iodide sensor. The current detection limit of 400 nM, which can possibly be further enhanced by optimizing the conditions, and excellent selectivity among 12 types of anion (F(-), Cl(-), Br(-), I(-), NO(3)(-), ClO(4)(-), HCO(3)(-), IO(3)(-), SO(4)(2-), SO(3)(2-), CH(3)COO(-) and C(6)H(5)O(7)(3-)) make Au(25)(SG)(18) a good candidate for iodide sensing. Furthermore, our work has revealed the particular sensing mechanism, which was found to be affinity-induced ratiometric and enhanced fluorescence (abbreviated to AIREF), which has rarely been reported previously and may provide an alternative strategy for devising nanoparticle-based sensors.     

Controlled reduction for size selective synthesis of thiolate-protected gold nanoclusters Aun (n = 20, 24, 39, 40)

ABSTRACT: This work presents a controlled reduction method for the selective synthesis of different sized gold nanoclusters protected by thiolate (SR = SC2H4Ph). Starting with Au(III) salt, all the syntheses of Aun(SR)m nanoclusters with (n, m) = (20, 16), (24, 20), (39, 29), and (40, 30) necessitate experimental conditions of slow stirring and slow reduction of Au(I) intermediate species. By controlling the reaction kinetics for the reduction of Au(I) into clusters by NaBH4, different sized gold nanoclusters are selectively obtained. Two factors are identified to be important for the selective growth of Au20, Au24, and Au39/40 nanoclusters, including the stirring speed of the Au(I) solution and the NaBH4 addition speed during the step of Au(I) reduction to clusters. When comparing with the synthesis of Au25(SC2H4Ph)18 nanoclusters, we further identified that the reduction degree of Au(I) by NaBH4 also plays an important role in controlling cluster size. Overall, our results demonstrate the feasibility of attaining new sizes of gold nanoclusters via a controlled reduction route.