Geochemical controls on the production and distribution of methylmercury in near-shore marine sediments

We examined temporal differences in sedimentary production of monomethylmercury (MMHg) at three sites in Long Island Sound (LIS). Sediment-phase concentrations of Hg species decreased from west to east in LIS surface sediments, following the trend of organic matter. However, Hg methylation potentials, measured by incubation with an isotopic tracer (200Hg), increased from west to east. 200Hg methylation potentials were enhanced in August relative to March and June, attributable to differences in activity of sulfate-reducing bacteria. Organic matter and acid-volatile sulfide influenced the distribution coefficient (KD) of inorganic Hg (Hg(II) = total Hg - MMHg) and inhibited 200Hg methylation in surface sediments. 200Hg methylation varied inversely with the KD of Hg(II) and positively with the concentration of Hg(II), mostly as HgS0, in LIS pore waters. Accordingly, we posit that a principal control on MMHg production in low-sulfide, coastal marine sediments is partitioning of Hg(II) between particle and dissolved phases, which regulates availability of Hg substrate to methylating bacteria. Most of the partitioning in LIS sediments is due to Hg-organic associations. This suggests that reductions in the organic content of coastal sediment, a potential result of nutrient abatement programs intended to inhibit eutrophication of near-shore waters, could enhance MMHg production by increasing the bioavailability of the large reservoir of "legacy Hg" buried within the sediment.     

Sunlight and iron(III)-induced photochemical production of dissolved gaseous mercury in freshwater

Mechanistic understanding of sunlight-induced natural processes for production of dissolved gaseous mercury (DGM) in freshwaters has remained limited, and few direct field tests of the mechanistic hypotheses are available. We exposed ferric iron salt-spiked fresh surface lake water (Whitefish Bay, Lake Superior, MI) in Teflon bottles and pond water (Oak Ridge, TN) in quartz bottles to sunlight in the field to infer if sunlight and Fe(III)-induced photochemical production of DGM could mechanistically contribute partly to natural photochemical production of DGM in freshwaters. We found that exposure of freshwater spiked with fresh Fe(III) (approximately 5 or 10 microM) to sunlight led to repeatable, significantly larger increases in DGM production (e.g., 380% in 1 h, 420% in 2 h, and 470% in 4 h for Whitefish Bay water) than exposure without the spike (e.g., 200% in 6 h). DGM increased with increasing exposure time and then often appeared to approach a steady state in the tests. Higher Fe(III) spike levels resulted in the same, or even less, DGM production. Storage of the water with or without Fe(III) spike in the dark after sunlight exposure led to significant, apparently first-order, decreases in DGM. These phenomena were hypothetically attributed to sunlight-induced photochemical production of highly reducing organic free radicals through photolysis of Fe(III)-organic acid coordination compounds and subsequent reduction of Hg(II) to Hg(0) by the organic free radicals; the reduction was also accompanied by dark oxidation of Hg(0) by photochemically originated oxidants (e.g., .OH). This study suggests that sunlight and Fe(III)-induced photochemical reduction of Hg(II) could be one of the mechanisms responsible for natural photochemical production of DGM in freshwaters and that Fe species may be influential in mediating Hg chemodynamics and its subsequent toxicity in aquatic ecosystems.     

Psychrobacters and related bacteria in freshwater fish

Three phenotypic identification systems were employed to identify 106 strains of gram-negative, nonmotile, aerobic bacteria obtained during iced storage of wild (Salmo trutta and Esox lucius) and farmed (Oncorhynchus mykiss) freshwater fish. Using diagnostic tables and computer-assisted identification, the isolates were Psychrobacter (64 strains), Acinetobacter (24 strains), Moraxella (6 strains), Chryseobacterium (5 strains), Myroides odoratus (2 strains), Flavobacterium (1 strain), Empedobacter (1 strain), and unidentified (3 strains). Overall similarities of all strains were determined for 108 characters by numerical analysis (simple matching coefficient of similarity [S] and clustering by unweighted pair group average linkage [UPGMA]). At the 77% similarity level, 92 strains formed nine major clusters (3 or more strains) and four small clusters (2 strains). Cluster 1 (25 isolates divided into two main subclusters) could be assigned to Psychrobacter phenylpyruvicus, clusters 2 and 3 (26 isolates) were designated as Psychrobacter immobilis, and clusters 4 (3 isolates) and 7 (4 isolates) were identified as Psychrobacter urativorans and Psychrobacter spp., respectively. Clusters 5 (five isolates), 6 (three isolates), and 9 (five isolates) were labeled as Acinetobacter spp., Acinetobacter johnsonii, and Acinetobacter lwoffii, respectively. Cluster 8 (12 isolates), with a high resemblance to Thornley's phenon 4 (a heterogeneous group of bacteria isolated from poultry and related to Acinetobacter), remained unnamed. The restriction pattern was identical for strains grouped into clusters 2 and 3 (P. immobilis) but was different for the remaining Psychrobacter isolates. A large proportion of isolates belonging to the family Moraxellaceae were closely related. Psychrobacters and A. johnsonii were present in freshly caught fish and river water. In the latter stages of storage, P. phenylpyruvicus and acinetobacters tended to decrease, whereas P. immobilis increased.     

Susceptibility of synthetic long-chain alkylbenzenes to degradation in reducing marine sediments

Long-chain alkylbenzenes (LCABs) synthesized for production of alkylbenzene sulfonate surfactants have been used as molecular markers of anthropogenic waste for 25 years. Synthetic LCABs comprise two classes, the tetrapropylene-based alkylbenzenes (TABs) and the linear alkylbenzenes (LABs). LABs supplanted TABs in the mid-1960s because of improved biodegradability of their sulfonated analogs. Use of LCABs for molecular stratigraphy depends on their preservation in sediments over decadal time scales. Most laboratory and field studies suggest that LABs degrade rapidly under aerobic conditions but are resistant to degradation when oxygen is absent. However, recent work indicates that LABs may not be as persistent under reducing conditions as previously thought. To assess the potential for degradation of LCABs in reducing sediments, box cores collected in 1992 and 2003 near a submarine wastewater outfall system were analyzed using gas chromatography/mass spectrometry. The TABs were effectively preserved; differences between whole-core inventories were within analytical error. By contrast whole-core inventories of the LABs decreased by about 50-60% during the same time interval. Based on direct comparison of chemical inventories in coeval core sections, LAB transformation rates are estimated at 0.07 +/- 0.01 yr(-1). These results indicate that caution should be exercised when using synthetic LCABs for reconstruction of depositional records.     

Accumulation of inorganic and methylmercury by freshwater phytoplankton in two contrasting water bodies

Phytoplankton concentrate mercury from their aqueous surroundings and represent the primary entry point for Hg in aquatic food webs. We used 203Hg to compare the uptake of inorganic mercury, Hg(II), and methylmercury, MeHg, in four phytoplankton species (a diatom, a chlorophyte, a cryptophyte, and a cyanobacterium) in two waters containing different concentrations of dissolved organic carbon (DOC). At steady state, volume concentration factors (VCFs) for Hg(II) in the four species were similar and ranged from 0.5 to 5 x 10(4) for both water types, whereas VCFs for MeHg exceeded those for Hg(II) and ranged from 1.3 to 14.6 x 10(5). The VCFs for MeHg in the three eukaryotic cells in the high DOC water were 2-2.6 times greater than those in the low DOC water, but the VCFs for the prokaryote were similar in both waters. Higher cell surface area to volume ratios correlated with increased MeHg concentrations but not with Hg(II). In both water types, VCFs of Hg(II) were similar for living and heat-killed cells, but the VCFs of MeHg were 1.5-5.0 times greater in living cells, suggesting an active uptake component for MeHg. Hg(II) and MeHg were entirely bound to cell surfaces of the dead cells, whereas 59-64% of the MeHg and 9-16% of the Hg(II) in living cells entered the cytoplasm.     

Absence of fractionation of mercury isotopes during trophic transfer of methylmercury to freshwater fish in captivity

We performed two controlled experiments to determine the amount of mass-dependent and mass-independent fractionation (MDF and MIF) of methylmercury (MeHg) during trophic transfer into fish. In experiment 1, juvenile yellow perch (Perca flavescens) were raised in captivity on commercial food pellets and then their diet was either maintained on unamended food pellets (0.1 μg/g MeHg) or was switched to food pellets with 1.0 μg/g or 4.0 μg/g of added MeHg, for a period of 2 months. The difference in δ(202)Hg (MDF) and Δ(199)Hg (MIF) between fish tissues and food pellets with added MeHg was within the analytical uncertainty (δ(202)Hg, 0.07 ‰; Δ(199)Hg, 0.06 ‰), indicating no isotope fractionation. In experiment 2, lake trout (Salvelinus namaycush) were raised in captivity on food pellets and then shifted to a diet of bloater (Coregonus hoyi) for 6 months. The δ(202)Hg and Δ(199)Hg of the lake trout equaled the isotopic composition of the bloater after 6 months, reflecting reequilibration of the Hg isotopic composition of the fish to new food sources and a lack of isotope fractionation during trophic transfer. We suggest that the stable Hg isotope ratios in fish can be used to trace environmental sources of Hg in aquatic ecosystems.     

降胆固醇乳酸菌的筛选及其降胆固醇活性研究

为了得到一株高效降胆固醇的乳酸菌并研究其降胆固醇的特性,本研究通过体外筛选得到一株降胆固醇能力为41.87%的乳酸乳球菌乳亚种Q,并用该乳酸菌发酵酸奶饲喂高脂模型大鼠,研究其对血清总胆固醇(TC)、血清甘油三酯(TG)、血清高密度脂蛋白(HDL-C)、血清总胆酸(TBA)、肝脏总胆固醇(TC)、粪便总胆固醇(TC)、粪便总胆酸(TBA)以及体重和肝、肾、脾重量的影响.结果发现28d后,实验组大鼠血清中TC、TG、TBA和肝脏中TC含量明显下降(P＜0.05),粪便中TC和TBA含量也降低.各组间大鼠的HDL-C、体重、肝重/体重、肾重/体重、脾重/体重无显著差异.     

Evidence for elevated production of methylmercury in salt marshes

Depth variations of total mercury (Hg) and methylmercury (MeHg) concentrations were obtained in cores from nonvegetated sediments, sediments colonized by Sarcocornia fruticosa, Halimione portulacoides, and Spartina maritima and below-ground biomass in three Portuguese estuaries. Similar analyses were also performed on the above-ground plant tissues. Concentrations in below-ground biomass exceeded up to 9 (Hg) and 44 (MeHg) times the levels in sediments. Mercury and MeHg in below-ground biomass were up to 400 (Hg) and 4700 (MeHg) times higher than those found in above-ground parts, indicating a weak upward translocation. Methylmercury in colonized sediments reached 18% of the total Hg, which was 70 times above the maximum values found in nonvegetated sediments. Concentrations of MeHg in vegetated sediments were not related to plant type but were linearly proportional to the total mercury levels. The analysis of below-ground biomass at high depth resolution (2 cm) provided evidence that Hg and MeHg were elevated. The higher enrichment factors were found where the shifting of redox conditions suggested high microbial activity. Mercury and MeHg in below-ground tissues were a function of total levels in sediments and again were not plant-specific. These results suggest that the bioremediation of mercury-contaminated sediments is likely to increase the formation of methylmercury.     

Controlled release of nitrate and sulfate to enhance anaerobic bioremediation of phenanthrene in marine sediments

Experimental measurements demonstrated that rates of in situ microbial anaerobic biodegradation of phenanthrene in undisturbed marine sediments were enhanced when controlled-release electron acceptors (i.e., nitrate and sulfate (for comparison)) were employed. The experimental method used whole and interval cores injected with radiolabeled 14C-phenanthrene, which were incubated, sacrificed, and processed for 14CO2 recovery to determine degradation rates. Nitrocellulose and CaSO4 were formulated to release the electron acceptors into the sediments at rates consistent with bacterial utilization (i.e., that avoided inhibition observed previously at high soluble nitrate (although not sulfate) concentrations). The controlled-release of both compounds, measured in collateral experiments, enhanced the natural anaerobic phenanthrene biodegradation rates by factors up to 2-3. Biodegradation via sulfate reduction was most rapid in the early stages (24 days) of experiments, consistent with reports that many marine bacteria in submerged sediments are sulfate reducers. In comparison, in longer experiments (after 42 days), the anaerobic biodegradation rates were observed at least as high with the addition of nitrocellulose (over 40% of added phenanthrene recovered as 14CO2). Both nitrate and sulfate reduction was observed during anaerobic incubation, although the presence of nitrate seemed to reduce the sulfate reduction. The studied forms of the controlled-release nitrate and sulfate may provide capping amendments to decontaminate marine harbor sediments.     

Biotransformation of tributyltin to tin in freshwater river-bed sediments contaminated by an organotin release

The largest documented release of organotin compounds to a freshwater river system in the United States occurred in early 2000 in central South Carolina. The release consisted of an unknown volume of various organotin compounds such tetrabutyltin (TTBT), tributyltin (TBT), tetraoctyltin (TTOT), and trioctyl tin (TOT) and resulted in a massive fish kill and the permanent closures of a municipal wastewater treatment plant and a local city's only drinking-water intake. Initial sampling events in 2000 and 2001 indicated that concentrations of the ecologically toxic TTBT and TBT were each greater than 10 000 microg/kg in surface-water bed sediments in depositional areas, such as lakes and beaver ponds downstream of the release. Bed-sediment samples collected between 2001 and 2003, however, revealed a substantial decrease in bed-sediment organotin concentrations and an increase in concentrations of degradation intermediate compounds. For example, in bed sediments of a representative beaver pond located about 1.6 km downstream of the release, total organotin concentrations [the sum of TTBT, TBT, and the TBT degradation intermediates dibutyltin (DBT) and monobutyltin (MBT)] decreased from 38 670 to 298 microg/kg. In Crystal Lake, a large lake about 0.4 km downstream from the beaver pond, total organotin concentrations decreased from 28 300 to less than 5 microg/kg during the same time period. Moreover, bed-sediment inorganic tin concentrations increased from pre-release levels of less than 800 to 32 700 microg/kg during this time. These field data suggest that the released organotin compounds, such as TBT, are being transformed into inorganic tin by bed-sediment microbial processes. Microcosms were created in the laboratory that contained bed sediment from the two sites and were amended with tributyltin (as tributyltin chloride) under an ambient air headspace and sacrificially analyzed periodically for TBT, the biodegradation intermediates DBT and MBT, and tin. TBT concentrations decreased faster [half-life (t1/2) = 28 d] in the organic-rich sediments (21.5%) that characterized the beaver pond as compared to the slower (t1/2 = 78 d) degradation rate in the sandy, organic-poor, sediments (0.43%) of Crystal Lake. Moreover, the concentration of inorganic tin increased in microcosms containing bed sediments from both locations. These field and laboratory results suggest that biotransformation of the released organotins, in particular the ecologically detrimental TBT, does occur in this fresh surface-water system impacted with high concentrations of neat organotin compounds.     

Field-scale reduction of PCB bioavailability with activated carbon amendment to river sediments

Remediation of contaminated sediments remains a technological challenge because traditional approaches do not always achieve risk reduction goals for human health and ecosystem protection and can even be destructive for natural resources. Recent work has shown that uptake of persistent organic pollutants such as polychlorinated biphenyls (PCBs) in the food web is strongly influenced by the nature of contaminant binding, especially to black carbon surfaces in sediments. We demonstrate for the first time in a contaminated river that application of activated carbon to sediments in the field reduces biouptake of PCBs in benthic organisms. After treatment with activated carbon applied at a dose similar to the native organic carbon of sediment, bioaccumulation in freshwater oligochaete worms was reduced compared to preamendment conditions by 69 to 99%, and concentrations of PCBs in water at equilibrium with the sediment were reduced by greater than 93% at all treatment sites for up to three years of monitoring. By comparing measured reductions in bioaccumulation of tetra- and penta-chlorinated PCB congeners resulting from field application of activated carbon to a laboratory study where PCBs were preloaded onto activated carbon, it is evident that equilibrium sorption had not been achieved in the field. Although other remedies may be appropriate for some highly contaminated sites, we show through this pilot study that PCB exposure from moderately contaminated river sediments may be managed effectively through activated carbon amendment in sediments.     

Stimulation of pyrene mineralization in freshwater sediments by bacterial and plant bioaugmentation

As a means to study the fate of polycyclic aromatic hydrocarbons (PAHs) in freshwater sediments, pyrene mineralization was examined in microcosms spiked with [14C]pyrene. Some microcosms were planted with reeds (Phragmites australis) and/or inoculated with a pyrene-degrading strain, Mycobacterium sp. 6PY1. Mineralization rates recorded over a 61 d period showed that reeds promoted a significant enhancement of pyrene degradation, which possibly resulted from a root-mediated increase of oxygen diffusion into the sediment layer, as indicated by in situ redox measurements. In inoculated microcosms, mineralization reached a higher level in the absence (8.8%) than in the presence of plants (4.4%). Mineralization activity was accompanied by the release of water-soluble pyrene oxidation products, the most abundant of which was identified as 4,5-diphenanthroic acid. Pyrene was recovered from plant tissues, including stems and leaves, at concentrations ranging between 40 and 240 microg/g of dry mass. Plants also accumulated labeled oxidation products likely derived from microbial degradation. Pyrene-degrading strains were 35-70-fold more abundant in inoculated than in noninoculated microcosms. Most of the pyrene-degrading isolates selected from the indigenous microflora were identified as Mycobacterium austroafricanum strains. Taken together, the results of this study show that plants or PAH-degrading bacteria enhance pollutant removal, but their effects are not necessarily cumulative.     

Contribution of lactic acid bacteria to flavour compound formation in dairy products

Cheese flavour cannot be produced without starter bacteria. Lactic acid bacteria convert lactose to lactic acid and this together with their production of diacetyl and acetaldehyde are their main contributions to the flavour of cultured milks and fresh cheeses. In matured cheeses, the starter bacteria die out quickly and the rate at which they lyse and release their enzymes into the system has an influence on the rate at which free amino acids are formed. Rennet alone is mainly responsible for the formation of large, medium and small peptides but, without interaction with other enzymes, is capable of producing only methionine, histidine, glycine, serine and glutamic acid at quantifiable levels. Free amino acids in Cheddar cheese are mainly the result of microbial peptidase activity. These amino acids, together with the products of glycolysis, form substrates for secondary flora, the nature of which, in many cases, determines the cheese variety. They also form substrates for enzymes from the milk, e.g. the production of H₂S appears to be dependent on milk enzymes. Methionine, which is released by rennet, is further metabolized by starter enzymes with the production of methanethiol which plays a major role in cheese flavour possibly as a potentiator for other flavours. —Dicarbonyls, particularly methylglyoxal and diacetyl, and bacteria which can produce them, appear to play a crucial role in the formation of cheese flavour, both the desirable flavour of full-fat cheese and the meaty-brothy off-flavour of low-fat cheese. Although, theoretically, there are many compounds in cheese which could react purely chemically to form flavour compounds, these reactions are also mediated by enzymes in the cheese system and it seems unlikely that straight out chemical reactions play a major role in the production of cheese flavour. The role of the secondary flora is likely to be much more important than that of chemical reactions. Particularly in Cheddar and Emmental it has been shown that good quality cheeses have a low oxidation-reduction potential. This is more likely to be an indicator for the establishment of the anaerobic conditions required for the flavour forming reactions to proceed than an active causal agent of flavour formation. The function of glutathione is more likely to be as some sort of facilitator in enzyme reactions than as an agent for the reduction of oxidation-reduction potential. The ability of bacteria to accumulate glutathione from their media is likely to be one of the indicators of flavour generating capacity. Suitable selected strains of adjunct bacteria increase the rate and intensity of formation of Cheddar cheese flavour but unsuitable adjuncts can also cause off-flavours.     

Spatial characteristics of net methylmercury production hot spots in peatlands

Many wetlands are sources of methylmercury (MeHg) to surface waters, yet little information exists about the distribution of MeHg within wetlands. Total mercury (THg) and MeHg in peat pore waters were studied in four peatlands in spring, summer, and fall 2005. Marked spatial variability in the distribution of MeHg, and %MeHg as a proxy for net MeHg production, was observed, with highest values occurring in discrete zones. We denote these zones "MeHg hot spots", defined as an area where the pore water %MeHg exceeded the 90th percentile of the data set (n=463) or >22% of THg as MeHg. MeHg hot spots occurred near the interface between peatland and the upland watershed with few exceptions. The %MeHg in pore water was significantly less in peatland interiors compared to upland-peatland interface zones, with the significance of these differences related to the delineation of the boundary between the two areas. Although further research is necessary, our data suggest that the occurrence of MeHg hot spots is related to the transport of solutes in upland runoff to the peatland perimeter and not to the accumulation of MeHg in this zone as a result of transport from either the peatland interior or the surrounding upland watershed. These findings augment the understanding of peatland MeHg production in upland-peatland watersheds, provide guidance for more accurate quantification of MeHg pool sizes in the landscape, and a spatial framework forthe further study of mercury methylation processes in peatlands.     

Speciation of iron and sulfate in acid waters: aqueous clusters to mineral precipitates

Acid mine drainage (AMD) contaminates surface water bodies, groundwater, soils, and sediments at innumerable locations around the world. AMD usually originates by weathering of pyrite (FeS2) and is rich in Fe and sulfate. In this study, we investigated speciation of FeII, FeIII, and SO4 in acid waters by Fourier transform infrared and X-ray absorption spectroscopy. The molalities of sulfate (15 mmol/ kg) and iron (10, 20, and 50 mmol/kg), and pH (1, 2, and 3) were chosen to mimic the concentration of ions in AMD waters. Sulfate and FeII either associate in outer-sphere complexes or do not associate at all. In contrast, sulfate interacts strongly with FeIII. The predominating species in FeIII-SO4 solutions are hydrogen-bonded complexes; inner-sphere complexes account only for 10+/-10% of the total sulfate. Our results show that the mode of interaction between FeIII and sulfate is similar in aqueous phase and in nanocrystalline precipitate schwertmannite (approximately FeO(OH)3/4(SO4)1/8). Because of this similarity, schwert-mannite should be the phase that controls solubility and availability of FeIII, SO4, and indirectly also other components in the AMD solutions.     

Distribution and early diagenesis of antimony species in sediments and porewaters of freshwater lakes

The study identifies the role played by different components of natural aquatic systems on the poorly known geochemistry of antimony. Different chemical forms of antimony were measured in porewaters and sediments of two Sudbury lakes characterized by contrasting redox conditions at the sediment-water interface. In porewaters, Sb(III) was present under reducing conditions where it could exist as SbS2- according to thermodynamic calculations. Sb(V) was detected mainly under oxic and mildly reducing environments where its presence was attributed to the oxidizing effect of iron and manganese oxyhydroxides or to the slow kinetics of reduction by dissolved sulfide or possible complexation by it. A third form of Sb identified as refractory was obtained after UV irradiation of the water samples, suggesting an association of Sb to low molecular weight natural organic matter. The distribution of Sb in sediments of the two lakes revealed (through the comparison of profiles and statistical correlations) the importance of iron and manganese oxyhydroxides in controlling the behavior of Sb, particularly in the lake where the interface was clearly oxic. Porewater profiles indicate that the dissolution of manganese and iron oxyhydroxides under anoxic conditions leads to the simultaneous release of dissolved Sb previously sorbed onto those compounds. In reducing sediments, the control of the solubility of Sb by iron sulfides is suggested.     

细菌及菌泥的控制高速纸机生产中

结合晨鸣集团的生产实际,阐述了高速提提要纸机生产中细菌及菌泥控制的方法和提提要措施。     

Contribution of Gal- lactic acid bacteria to Saccharomyces cerevisiae metabolic activity in milk

The contemporaneous presence of Streptococcus thermophilus and Lactobacillus delbrueckii subsp. bulgaricus affected the growth kinetics of Saccharomyces cerevisiae PZ2 and the metabolic products of their growth were quantitatively and qualitatively different from those produced by single strains inoculated alone. S. cerevisiae can grow in milk without using lactose or galactose. In particular, the presence of peptides seems to be sufficient to ensure its growth. The growth of S. cerevisiae with lactic acid bacteria is characterised by stimulatory effects that involve both yeast and bacteria. However, the release of galactose by lactic acid bacteria does not seem to be the core metabolic event of these stimulatory effects on S. cerevisiae.     

Community structure, abundance, and in situ activity of nitrifying bacteria in river sediments as determined by the combined use of molecular techniques and microelectrodes

The community structure, spatial distributions, and in situ activity of ammonia-oxidizing bacteria (AOB) representing the Betaproteobacteria and nitrite-oxidizing bacteria (NOB) representing the genus Nitrospira in three different river sediments with different pollution sources and levels along the Niida River, Hachinohe, Japan, were investigated by the combined use of 16S rRNA gene-cloning analysis, real-time quantitative polymerase chain reaction (RTQ-PCR) assays, and microelectrodes. The goal of this research was to evaluate the contribution of nitrifying activity in the sediment to the overall nitrogen elimination rate in this river. The 16S rRNA gene-cloning analysis revealed that the community structures of AOB and Nitrospira-like NOB are present in three sediments. On the basis of the results of 16S rRNA gene-cloning analysis, the RTQ-PCR assay using a TaqMan probe was developed and optimized for the quantification of the Nitrospira-like NOB. In the sediments, AOB specific 16S rRNA genes were detected in the range of 10(6) to 10(7) copies/cm3 and evenly distributed over the sampled sediment depth (0-5 mm), whereas the Nitrospira-like NOB 16S rRNA gene copy numbers per cm3 were 1-2 orders of magnitude higher than the AOB copy numbers. Under light conditions, intensive oxygenic photosynthesis occurred in the surface and increased the maximal O2 concentration and O2 penetration depth in all sediments. This concomitantly stimulated nitrifying bacteria present in diurnally anoxic deeper zones and expanded nitrification zones, which consequently increased the total NH4+ consumption rate in the sediment (i.e., total NH4+ flux into the sediment). The results suggested that the in situ nitrifying activity was restricted mainly to the surface 2 mm of the sediment and linked with photosynthetic activity, which obviously plays an important role in nitrogen elimination in this river.