Electrostatic axially harmonic orbital trapping: a high-performance technique of mass analysis

This work describes a new type of mass analyzer which employs trapping in an electrostatic field. The potential distribution of the field can be represented as a combination of quadrupole and logarithmic potentials. In the absence of any magnetic or rf fields, ion stability is achieved only due to ions orbiting around an axial electrode. Orbiting ions also perform harmonic oscillations along the electrode with frequency proportional to (m/z)-1/2. These oscillations are detected using image current detection and are transformed into mass spectra using fast FT, similarly to FTICR. Practical aspects of the trap design are presented. High-mass resolution up to 150,000 for ions produced by laser ablation has been demonstrated, along with high-energy acceptance and wide mass range.     

Ion "threshing": collisionally activated dissociation in an external octopole ion trap by oscillation of an axial electric potential gradient

We have implemented efficient and rapid collisionally activated dissociation (CAD) external to an ICR cell by use of a novel axial electric potential gradient mounted in an external ion accumulation octopole. The gradient is produced by eight tilted (in the axial direction) wires mounted between the rods of the octopole. Rapid switching of the wire potential between a positive and negative value drives the ion axial motion back and forth and, in the presence of nitrogen gas at suitable pressure, induces dissociation. A fragmentation period on the order of tens of milliseconds is typical. Precursor ion isolation is achieved in a quadrupole mass filter mounted between the electrospray source and the accumulation octopole. A scan rate of >1 Hz is possible with resolving power and mass accuracy equivalent to direct infusion experiments (for equivalent detection period for 1 scan). The method is thus sufficiently rapid for MS/MS with on-line LC sample introduction. Moreover, compared to CAD in the ICR cell, external CAD improves mass accuracy, producing thermal on-axis fragment ions for detection.     

Implementation of ion/ion reactions in a quadrupole/time-of-flight tandem mass spectrometer

A commercial quadrupole/time-of-flight (QqTOF) tandem mass spectrometer has been adapted for ion/ion reaction studies. To enable mutual storage of oppositely charged ions in a linear ion trap, the oscillating quadrupole field of the second quadrupole of the system (Q2) serves to store ions in the radial dimension while auxiliary radio frequency is superposed on the end lenses of Q2 during the reaction period to create barriers in the axial dimension. A pulsed dual electrospray (ESI) source is directly coupled to the instrument interface for the purpose of proton transfer reactions. Singly and doubly charged protein ions as high in mass as 66 kDa are readily formed and observed after proton-transfer reactions. For the modified instrument, the mass resolving power is approximately 8000 for a wide m/z range, and the mass accuracy is approximately 20 ppm for external calibration and approximately 5 ppm for internal calibration after ion/ion reactions. Parallel ion parking is demonstrated with a six-component protein mixture, which shows the potential application of reducing spectral complexity and concentrating certain charge states. The current system has high flexibility with respect to defining MS(n) experiments involving collision-induced dissociation (CID) and ion/ion reactions. Protein precursor and CID product masses can be determined with good accuracy, providing an attractive platform for top-down proteomics. Electron transfer dissociation ion/ion reactions are implemented by using a pulsed nano-ESI/atmospheric pressure chemical ionization dual source for ionization. The reaction between protonated peptide ions and radical anions of 1,3-dinitrobenzene formed exclusively c- and z-type fragment ions.     

Electron ionization in superimposed magnetic and radio frequency quadrupolar electric fields

An improved design of a novel electron ionization source for orthogonal acceleration time-of-flight mass spectrometry is described, based on the superimposition of an axial magnetic field with cylindrical symmetry around a radio frequency-only quadrupole. A tubular permanent magnet was designed to generate the required strong magnetic field and field profile. An axial electric field along the ion guide for efficient ion extraction was introduced using segmented quadrupole rods. Details of the source design and the effects of various operating parameters are described. The source produces high-quality mass spectra with regard to fragmentation, relative abundances, and isotopic ratios. Preliminary results have shown excellent sensitivity, with limits of detection in the subfemtogram range (octafluoronaphthalene, full spectrum acquisition) in gas chromatography/mass spectrometry operation.     

Positive ion transmission mode ion/ion reactions in a hybrid linear ion trap

A triple quadrupole mass spectrometer capable of ion trapping experiments has been adapted for ion/ion reaction studies. The instrument is based on a commercially available linear ion trap (LIT) tandem mass spectrometer (i.e., an MDS SCIEX 2000 Q TRAP) that has been modified by mounting an atmospheric sampling glow discharge ionization (ASGDI) source to the side of the vacuum manifold for production of singly charged anions. The ASGDI source is located line of sight to the side of the third quadrupole of the triple quadrupole assembly (Q3). Anions are focused into the side of the rod array (i.e., anion injection occurs orthogonal to the normal ion flight path). A transmission mode method to perform ion/ion reactions has been developed whereby positive ions are transmitted through the pressurized collision quadrupole (Q2) while anions are stored in Q2. The Q2 LIT is used to trap negative ions whereas the Q3 LIT is used to accumulate positive ions transmitted from Q2. Anions are injected to Q3 and transferred to Q2, where they are stored and collisionally cooled. Multiply charged protein/peptide ions, formed by electrospray, are then mass selected by the first quadrupole assembly (Q1) operated in the rf/dc mode and injected into Q2. The positive ions, including the residual precursor ions and the product ions arising from ion/ion proton-transfer reactions, are accumulated in Q3 until they are analyzed via mass-selective axial ejection for mass analysis. The parameters that affect ion/ion reactions are discussed, including pressure, nature of the gas in Q2, and operation of Q2 as a linear accelerator. Ion/ion reactions in this mode can be readily utilized to separate ions with the same m/z but largely different mass and charge, e.g., +1 bradykinin and +16 myoglobin, in the gas phase.     

Ion beam effects on dust grains: 2—Influence of charging history

Dust grains in space are charged by various processes. Impacts of energetic ions lead to deposition of positive charge on the grain, increasing the grain potential and, as a consequence, the electric field at its surface. The accumulated charge is spontaneously released as an emission current when the electric field reaches a threshold. This discharging current is usually attributed to field ionization of any gas surrounding the grain or to ion field emission and would thus be predominantly a function of the surface potential. However, preliminary studies [Velyhan A, Z?ilavý P, Pavl? J, S?afránková J, Něme?ek Z. Ion beam effects on dust grains. Vacuum 2004;76:447-55] using melamine formaldehyde spheres have shown that the discharging current depends strongly on the energy of primary ions. The present paper continues these investigations with the motivation to understand the whole charging/discharging process. The experiment is based on the capture of a single dust grain in an electrodynamic quadrupole. The trapped grain is exposed to an ion beam with different energies up to 5 keV and its charge and surface potential are estimated from the frequency of its oscillations in the quadrupole. The charging/discharging currents are determined from temporal changes of the grain charge. Our results suggest that the grain charge is accumulated in a thick surface layer of non-conducting samples. The thickness of this layer depends on the mass and energy of primary ions. On the other hand, the beam ions probably recombine on the metallic surfaces and create an adsorbed layer there. We believe that the main discharging process is field desorption complemented in this particular case with post-ionization.     

Charge capacity limitations of radio frequency ion guides in their use for improved ion accumulation and trapping in mass spectrometry

The use of radio frequency (rf) ion guides as "linear" two-dimensional ion traps and ion guides for ion storage and accumulation, respectively, is becoming increasingly important for realizing improved sensitivity in mass spectrometry. Analytical relationships describing the ion accumulation operation mode of rf ion guides are reported. Comparisons are made between the rf quadrupole ion guide, higher-order rf multipoles and rf stacked ring ion guides, in terms of the charge capacity limitations due to the instability of ions, rf focusing efficiency limits, and effects due to rf ion heating (i.e., collisional activation due to rf oscillations of ions). Analytical relations for the stored charge quantity are derived in the low ion energy approximation, which is shown to be reasonable for the systems considered. The ion density spatial distribution is derived, an exponential form of which proved to provide a good approximation for high-order rf multipoles and stacked ring rf ion guides. The limit on the stored charge dependence upon rf is shown to be directly related to the thermal dissociation thresholds for the ions being studied; the limitation is weaker for higher-order multipoles and stacked ring ion guides. These results suggest that rf quadrupoles provide an optimum configuration when accumulation of a moderate ion density is sufficient (below 10(9) elementary charges/m). Alternatively, accumulation of an appreciable density for more fragile species, such as noncovalent complexes, may be realized using higher-order multipoles and stacked ring ion guides.     

离子在矩形波四极场中的运动与四极场离子阱质谱的数字化操作

矩形波驱动的四极场同样可用于对离子进行质量分析和存储。本文推导了离子在矩形波四极场中的运动规律,并以常用于正弦波四极场的马绍方程参量a,q来表出离子的稳定性。运用赝势阱概念探讨了离子在这种四极场中的本征振动,推导了本征振动频率的近似公式。在理论研究的基础上,提出了数字化离子阱质谱的概念,并运用离子光学模拟,研究了实际离子阱几何结构下的共振出射以及数字化质量扫描的可行性。     

Broad-band fourier transform quadrupole ion trap mass spectrometry

Broad-band nondestructive ion detection is achieved in a quadrupole ion trap mass spectrometer by impulsive excitation of a collection of trapped ions of different masses and recording of ion image currents induced on a small detector electrode embedded in but isolated from the adjacent end cap electrode. The image currents are directly measured using a simple differential preamplifier, filter, and amplifier combination and then Fourier analyzed to obtain broad-band frequency domain spectra characteristic of the sample ions. The use of the detector electrode provides a significant reduction in capacitive coupling with the ring electrode. This minimizes coupling of the rf drive signal, which can saturate the front-end stage of the detection circuit and prevent measurement of the relatively weaker ion image currents. Although impulsive excitation is preferred due to its broad-band characteristics and simplicity of use, results are also given for narrow-band ac and broad-band SWIFT (stored wave-form inverse Fourier transform) excitation. Data using argon, acetophenone, and n-butylbenzene show that a resolution of better than 1000 is obtained with a detection bandwidth of 400 kHz. An advantage of nondestructive ion detection is the ability to measure a single-ion population multiple times. This is demonstrated using argon as the sample gas with an average remeasurement efficiency of >90%. Tandem mass spectrometry experiments using a population of acetophenone ions are also shown.     

Ion mobility spectrometer with radial collisional focusing

An ion mobility spectrometer that has its mobility cell as a 20-segment quadrupole and functionally the q2 of a triple-quadrupole mass spectrometer has been assembled and tested. The combination of high cell pressure (maximum of 4 Torr of helium) and low axial field (20-160 V per 20.2 cm) results in negligible internal excitation of the ions despite applications of rf and axial fields. The presence of collisional focusing ensures efficient ion transmission and good sensitivity. Collision cross sections of atomic, cluster, peptide, and protein ions were measured and found comparable to literature and calculated cross sections.     

A tandem ion trap/ion mobility spectrometer

A tandem quadrupole ion trap/ion mobility spectrometer (QIT/IMS) has been constructed for structural analysis based on the gas-phase mobilities of mass-selected ions. The instrument combines the ion accumulation, manipulation, and mass-selection capabilities of a modified ion trap mass spectrometer with gas-phase electrophoretic separation in a custom-built ion mobility drift cell. The quadrupole ion trap may be operated as a conventional mass spectrometer, with ion detection using an off-axis dynode/multiplier arrangement, or as an ion source for the IMS drift cell. In the latter case, pulses of ions are ejected from the trap and transferred to the drift cell where mobility in the presence of helium buffer gas is determined by the collision cross section of the ion. Ions traversing the drift cell are detected by an in-line electron multiplier and the data processed with a multichannel scaler. Preliminary data are presented on instrumental performance characteristics and the application of QIT/ IMS to structural and conformational studies of aromatic ions and protonated amine/crown ether noncovalent complexes generated via ion/molecule reactions in the ion trap.     

VUV single-photon ionization ion trap time-of-flight mass spectrometer for on-line, real-time monitoring of chlorinated organic compounds in waste incineration flue gas

In this work, a sensitive and robust vacuum ultra-violet (VUV) single-photon ionization (SPI) ion trap time-of-flight mass spectrometer (VUV-SPI-IT-TOFMS) for on-line, realtime monitoring of chlorinated organic compounds in waste incineration flue gas has been newly developed. The fragment-free SPI technique with 121.6-nm VUV lamp irradiated by a microwave generator and the quadrupole ion trap to accumulate and select analyte ions were combined with a reflectron time-of-flight mass spectrometer to detect chlorinated organic compounds at trace level. This measuring system was tuned up to detect dioxins precursors with the aim at an application to monitoring trace level toxic substances in flue gases from incinerator furnaces. As a result, this technology has made it possible to analyze trichlorobenzene (T3CB), a dioxin precursor, in 18 s with a sensitivity of 80 ng/m3-N (10 pptv) using the selective accumulation of analyte substances and separation of interfering substances in the ion trap. Moreover, the first field test of the continuous monitoring T3CB in an actual waste incineration flue gas had been done for 7 months. The results show that this system has an exceeding robust performance and is able to maintain the high sensitivity in analyzing T3CB for long months of operation.     

Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer

Design and performance of a novel hybrid mass spectrometer is described. It couples a linear ion trap mass spectrometer to an orbitrap mass analyzer via an rf-only trapping quadrupole with a curved axis. The latter injects pulsed ion beams into a rapidly changing electric field in the orbitrap wherein they are trapped at high kinetic energies around an inner electrode. Image current detection is subsequently performed after a stable electrostatic field is achieved. Fourier transformation of the acquired transient allows wide mass range detection with high resolving power, mass accuracy, and dynamic range. The entire instrument operates in LC/MS mode (1 spectrum/s) with nominal mass resolving power of 60,000 and uses automatic gain control to provide high-accuracy mass measurements, within 2 ppm using internal standards and within 5 ppm with external calibration. The maximum resolving power exceeds 100,000 (fwhm). Rapid, automated data-dependent capabilities enable real-time acquisition of up to three high-mass accuracy MS/MS spectra per second.     

Multiplexed MS/MS in a quadrupole ion trap mass spectrometer

A multiplexing method for performing MS/MS on multiple peptide ions simultaneously in a quadrupole ion trap mass spectrometer (QITMS) has been developed. This method takes advantage of the inherent mass bias associated with ion accumulation in the QITMS to encode the intensity of precursor ions in a way that allows the corresponding product ions to be identified. The intensity encoding scheme utilizes the Gaussian distributions that characterize the relationship between ion intensities and rf trapping voltages during ion accumulation. This straightforward approach uses only two arbitrary waveforms, one for isolation and one for dissociation, to gather product ion spectra from N precursor ions in as little as two product ion spectra. In the example used to illustrate this method, 66% of the product ions from five different precursor peptide ions were correctly correlated using the multiplexing approach. Of the remaining 34% of the product ions, only 6% were misidentified, while 28% of the product ions failed to be identified because either they had too low intensity or they had the same m/z ratio as one of the precursor ions or the same m/z ratio as a product ion from a different precursor ion. This method has the potential to increase sample throughput, reduce total analysis times, and increase signal-to-noise ratios as compared to conventional MS/MS methods.     

装有贝塞尔盒型能量分析仪的电离规和四极质谱计的研制

贝塞尔盒型能量分析仪由三部分组成 :一个圆筒形电极、一个中心圆盘和两个带中心孔的侧板 ,该分析仪结构简单、结实 ,十分适用于电离规和四极质谱计上。对电离规而言 ,分析仪被放置于电离器及离子收集器之间。在栅型电离器中所产生的离子被分离并注入到能量分析仪中。分析仪依据其激发的能量把电离器中产生的气相离子和栅网表面上脱附的电子激励解吸的离子分离开。如果应用一个法拉第杯型离子收集器和一个灵敏的直流放大器来进行离子流测量的话 ,那么该电离规测量范围在 10 - 1 0 ～ 10 - 3Pa之间。当二次电子倍增器采用脉冲计数方法时 ,所测量的压力范围在 10 - 1 1～ 10 - 6 Pa之间 (Ax TRAN,ISX2 ,U L VAC公司 ) .其典型灵敏度对氮气而言为 (6 .7± 0 .2 )× 10 - 3Pa- 1 和对氢而言为 (2 .3± 0 .0 4 )× 10 - 3Pa- 1 。对四极质谱计而言 ,能量分析仪被置于在电离器和四极滤质器之间。装有该分析仪的质谱计 ,给出了没有电子激励解吸离子的简单质谱。该分析仪能使四极质谱计的离子收集器免受从栅网表面发射的 X射线的辐射 ,和从电离器中的离子以及被激发的分子在退激励过程中释放的紫外线的辐射。这种屏蔽作用改善了在 10 - 3Pa范围内的气体中微量杂质的检测极限 ,使之降至亿分之几     

An interface with a linear quadrupole ion guide for an electrospray-ion trap mass spectrometer system

A new ion sampling interface for an electrospray ionization 3D ion trap mass spectrometer system is described. The interface uses linear rf quadrupoles as ion guides and ion traps to enhance the performance of the 3D trap. Trapping ions in the linear quadrupoles is demonstrated to improve the duty cycle of the system. Dipolar excitation of ions trapped in a linear quadrupole is used to eject unwanted ions. A resolution of ejection of up to 254 is demonstrated for protonated reserpine ions (m/z 609.3). A composite waveform with a notch in frequency space is used to eject a wide range of matrix ions and to isolate trace analyte ions in a linear quadrupole before ions are injected into the 3D trap. This is useful to overcome space charge problems in the 3D trap caused by excess matrix ions. For trace reserpine in a 500-fold molar excess of poly(propylene glycol) (PPG), it is demonstrated that the resolution and sensitivity of the 3D trap can be increased dramatically with ejection of the excess PPG matrix ions. In comparison to ejection of matrix ions in the 3D trap with a similar broad-band waveform, a 5-fold increase in sensitivity with a 7 times shorter acquisition time was achieved.     

Flexing the electrified meniscus: the birth of a jet in electrosprays

Spraying of liquids through an electrified meniscus has become a method of choice to produce ions from large biomolecules. Using mass spectrometry, the generated ions can be analyzed to provide detailed information on their composition and structure. This technique enables high-throughput protein analysis that is a prerequisite for answering the questions presented by proteomics. In this report, Taylor cone deformations are shown to play a central role in the mechanism of electrostatic spraying. Spontaneous spray current oscillations are known to exist in most electrospray regimes and affect the stream of ions introduced into the mass spectrometer. Fast time-lapse imaging of the Taylor cone throughout its evolution indicates the presence of a nodal line and standing waves on its surface. Four phases of the cone pulsation cycle (liquid accumulation, cone formation, ejection of a jet, relaxation) are established. Based on image analysis, apex velocities, curvatures, and opening angles are determined. During jet ejection, the apex velocity and the curvature exhibit singularities. Furthermore, the pulsation frequencies of the Taylor cone deformations are determined using Fourier analysis of light refraction measurements. The oscillation frequency of the electrospray current collected by the counter electrode shows close correlation to the cone deformations, providing the first direct evidence that links spray current oscillations to Taylor cone pulsation. Thus, monitoring the oscillation frequency throughout the spraying process and adjusting the spray parameters can be used to stabilize the spray. Furthermore, synchronizing the injection of ions in time-of-flight systems with the spontaneous spray oscillations may improve the signal-to-noise ratio in the collected mass spectra.     

Resonance ejection from the paul trap: a theoretical treatment incorporating a weak octapole field

In response to the growing experimental evidence of the importance of nonlinear phenomena in ion trap operation, a new theoretical model of ion ejection is developed. The pseudopotential well approximation for forced ion oscillations in an ion trap under the conditions of ion-molecule collisions is modified to include octapole perturbations on the quadrupole field. Ion ejection is investigated using the first-order Mitropol'skii asymptotic method for both infinitesimal and finite scan rates. It is shown that the combined action of collisional damping and nonlinearity distorts the resonance curve in such a way that "quenching" of oscillations takes place. As a result, with appropriate excitation and direction of scanning, the amplitude increases as if no damping exists! The main characteristics of the jump are derived as functions of scan rate and used for analytical estimation of mass resolution, mass peak width, and excitation voltage. Satisfactory agreement between calculated and experimental peak widths is demonstrated for the range of scanning rates in excess of 6 orders of magnitude.     

Tandem ion trap design with enhanced mass analysis capabilities for large populations of ions

A new arrangement consisting of two separate radio frequency (rf) quadrupole ion traps is used to analyze large populations of ions over a wide mass-to-charge (m/z) range. The setup consists of an "accumulation" trap that is maintained at a higher pressure than the second high-performance "analyzer" trap. The two traps are scanned simultaneously, with a mass difference between that determines the residence time and mass range of ions in the analytical trap. Initially, all ions are trapped in the accumulation trap and then mass-selectively ejected into the analyzer trap. As ions arrive in the analyzer trap, they cool through collisions with the buffer gas and then are mass selectively ejected toward the detector. This concurrent linked mass scanning reduces the total number of ions present in the analyzer trap during mass analysis, thereby reducing space charge effects and leading to improved resolution and mass accuracy of analytical spectra.     

Analysis of bromotryptophan and hydroxyproline modifications by high-resolution,high-accuracy precursor ion scanning utilizing fragment ions with mass-deficient mass tags

Protein modifications are often detected by precursor ion scanning. When quadrupole TOF mass spectrometers are used for precursor ion scanning with high-resolution, high-accuracy fragment ion selection, "reporter" ions are required to have a unique mass within +/-0.04 Da or less instead of +/-0.5 Da on triple quadrupole mass spectrometers, the traditional instrument used for precursor ion scanning. Thus, characteristic fragment ions can be utilized even if other fragment ions have the same nominal mass as long as the characteristic fragment ions are slightly mass deficient as compared to the other fragments, i.e., when they have an inherent mass-deficient mass tag. Here, the immonium ions of bromotryptophan and hydroxyproline are described as two fragment ions characteristic for tryptophan-brominated and proline-hydroxylated peptides, respectively. The "reporter" ion of trytophan-brominated peptides is highly mass deficient due to the presence of bromine, thereby allowing the selective detection of these species and the distinction from other dipeptidic a-, b-, and y-fragment ions by high-resolution, high-accuracy precursor ion scanning. This strategy also enables the differentiation between precursors giving rise to the oxygen-containing immonium ion of hydroxyproline and precursors of the immonium ions of near-ubiquitous leucine/isoleucine. Both immonium ions have the same nominal mass of 86 Da, but the exact masses differ by less than 0.04 Da. High-resolution, high-accuracy precursor ion scanning enabled the identification of proline-hydroxylated and tryptophan-brominated species and the directed analysis of species carrying these modifications in a highly complex Conus textile conotoxin mixture. This lead to the characterization of one novel C. textile conotoxin containing a bromotryptophan residue and one novel C. textile conotoxin carrying two hydroxyproline residues.