Resonant-enhanced evanescent-wave fluorescence biosensing with cylindrical optical cavities

We show that the artificial resonances of dielectric optical cavities can be used to enhance the detection sensitivity of evanescent-wave optical fluorescence biosensors to the binding of a labeled analyte with a biospecific monolayer. Resonant coupling of power into the optical cavity allows for efficient use of the long photon lifetimes (or equivalently, the high internal power) of the high-Q whispering gallery modes to increase the probability of photon absorption into the fluorophore, thereby enhancing fluorescence emission. A method to compare the intrinsic sensitivity between resonant cavity and waveguide formats is also developed. Using realistic estimates for dielectric cylindrical cavities in both bulk and integrated configurations, we can expect sensitivity enhancement by at least an order of magnitude over standard waveguide evanescent sensors of equivalent sensing geometries. In addition, the required sample volume can be reduced significantly. The cylindrical cavity format is compatible with a large variety of sensing modalities such as immunoassay and molecular diagnostic assay.     

Fiber-optic chemical sensing with langmuir-blodgett overlay waveguides

Fiber-optic chemical sensing has been demonstrated with a side-polished single-mode optical fiber, evanescently coupled to chemically sensitive Langmuir-Blodgett (LB) overlay waveguides. The sensors exhibit a channel-dropping response centered on a wavelength that is dependent on the thickness and the refractive index of the overlay waveguide. It has been shown that pH-sensitive organic dyes proved to be suitable materials for the formation of an overlay waveguide whereas LB deposition provides the required thickness control. A theoretical model of the sensor response, based on the Kramers-Kronig relations and phase matching of the guided modes within the optical fiber and overlay waveguide, shows good agreement with experimental results.     

Planar silicon nitride waveguides for biosensing

The principles of attenuation of the light intensity due to multiple reflections are realised in a planar silicon oxide (SiO(2))silicon nitride (Si(3)N(4)) waveguiding structure for the purpose of developing optical biosensors with improved sensitivity. The analysis of the experimental data shows that the large difference in refractive indices of core and cladding layers gives rise to an increase in sensitivity by a factor of 3 over previously reported structures. Composite polyelectrolyte self-assembled thin films containing cyclo-tetra-chromotropylene as an indicator and enzymes glucose oxidase or urease were employed in the superstrate as a sensing membrane. Individual enzyme reactions as well as their inhibition by pesticides were studied by monitoring the intensity of light output from the planar waveguide. The results were compatible with those obtained by conventional ultraviolet-visible absorption spectroscopy. The instrument detection limit for Imidacloprid pesticide was found to be as low as 10 ppb in concentration.     

Polymer nanofibers embedded with aligned gold nanorods: a new platform for plasmonic studies and optical sensing

This paper reports the fabrication and characterization of polymer nanofibers embedded with gold nanorods in uniaxial alignment for applications in optical waveguiding and sensing. Using a waveguiding approach, we demonstrated highly efficient excitation of localized surface plasmon resonance in the embedded gold nanorods with a photon-to-plasmon-conversion efficiency as high as 70% for a single nanorod at its longitudinal resonance wavelength. On the basis of waveguiding polymer nanofibers embedded with gold nanorods, we further demonstrated compact optical humidity sensors with a response time of 110 ms and an operation optical power as low as 500 pW.     

Relationship between sensitivity and waveguide position on the diaphragm in integrated optic pressure sensors based on the elasto-optic effect

The sensitivities of integrated optic pressure sensors with diaphragms theoretically are known to be strongly dependent on the position of the sensing waveguide on the diaphragm. According to the theoretical results, the diaphragm edge is the best position for the waveguide of a sensor based on the elasto-optic effect. The relationship between sensitivity and the waveguide position, however, has not been investigated experimentally, although it is important in the designing of such a sensor and in determining the misalignment tolerance of the sensing waveguide. In this study, this relationship in a glass-based integrated optic sensor by use of an intermodal interference was examined experimentally.     

Eigenvalue equation and core-mode cutoff of weakly guiding tapered fiber as three layer optical waveguide and used as biochemical sensor

The core-mode cutoff plays a major role in evanescent field absorption based sensors. A method has been proposed to calculate the core-mode cutoff by solving the eigenvalue equations of a weakly guiding three layer optical waveguide graphically. The variation of normalized waveguide parameter (V) is also calculated with different wavelengths at core-mode cutoff. At the first step, theoretical analysis of tapered fiber parameters has been performed for core-mode cutoff. The taper angle of an adiabatic tapered fiber is also analyzed using the length-scale criterion. Secondly, single-mode tapered fiber has been developed to make a precision sensor element suitable for chemical detection. Finally, the sensor element has been used to detect absorption peak of ethylenediamine. Results are presented in which an absorption peak at 1540 nm is observed.     

Design of a Single-Channel Modal Interferometer Waveguide Sensor

This paper describes a waveguide sensor design that allows interferometric phase sensing in an optical waveguide without the requirement of a reference leg. The new design is based on two guided modes that interfere by an abrupt discontinuity of the waveguide into a single-mode output. Refractive index changes in the sensed material generate phase changes mainly in the higher mode, with the lower mode used as a reference. Calculated values show sensitivities much higher than single-channel surface plasmon resonance sensors and somewhat lower than dual channel phase sensors in a conventional Mach-Zehnder configuration. Our design allows for a simple, single-channel, compact, highly sensitive, and low attenuation phase sensor. A comprehensive analysis of the role of different design parameters in the performance of the sensor is presented.     

Polymeric dual-slab waveguide interferometer for biochemical sensing applications

A polymer based dual-slab waveguide Young's interferometer was demonstrated for biochemical sensing. Evanescent field is utilized for probing the binding events of biomolecules on the waveguide surface. Refractive index sensing in analyte and protein adsorption on the sensing surface were investigated with glucose de-ionized water solution and bovine serum albumin, immunoglobulin G solutions in phosphate buffered saline buffer. A detection limit of 10(-5) RIU and 4 pg/mm(2) was achieved for homogeneous and surface sensing, respectively. Also, the influence of water absorption inside the polymeric device on the measurement stability was evaluated. The results indicate that the waveguide polymer sensor fabricated with the spin coating technique can achieve a satisfactory sensitivity for homogeneous refractive index sensing and, as well, for monitoring molecular binding events on the surface.     

The design of evanescent-field-coupled waveguide-mode sensors

An evanescent-field-coupled waveguide-mode sensor with a multilayer structure consisting of a dielectric waveguide, a thin reflecting layer, and a glass substrate illuminated under the Kretschmann configuration operates as a sensor that is capable of detecting modifications in the dielectric environment near the waveguide surface with superior sensitivity by measuring the change in reflectivity. The sensitivity of the sensor is strongly dependent on the optical constants of the reflecting layer. Numerical simulations show that a sensor having a reflecting layer with a small value of the real part of the complex refractive index shows a good sensitivity for both S-?and P-polarized light. Materials with values of the real and imaginary parts of the complex refractive index of >4 and ～0.5, respectively, are suitable for use as reflecting layers when S-polarized light excites only the lowest order waveguide mode. The simulations were experimentally confirmed using sensors with Au, Cu, Cr, W, a-Si, or Ge reflecting layers deposited by radiofrequency magnetron sputtering by observation of specific adsorption of streptavidin on biotinyl groups using an S-polarized laser beam with a wavelength of 632.8?nm. From the results, guidelines are given for the fabrication of preferred sensor configurations.     

An Ultrasensitive Silicon Photonic Ion Sensor Enabled by 2D Plasmonic Molybdenum Oxide

Silicon photonics has demonstrated great potential in ultrasensitive biochemical sensing. However, it is challenging for such sensors to detect small ions which are also of great importance in many biochemical processes. A silicon photonic ion sensor enabled by an ionic dopant–driven plasmonic material is introduced here. The sensor consists of a microring resonator (MRR) coupled with a 2D restacked layer of near‐infrared plasmonic molybdenum oxide. When the 2D plasmonic layer interacts with ions from the environment, a strong change in the refractive index results in a shift in the MRR resonance wavelength and simultaneously the alteration of plasmonic absorption leads to the modulation of MRR transmission power, hence generating dual sensing outputs which is unique to other optical ion sensors. Proof‐of‐concept via a pH sensing model is demonstrated, showing up to 7 orders improvement in sensitivity per unit area across the range from 1 to 13 compared to those of other optical pH sensors. This platform offers the unique potential for ultrasensitive and robust measurement of changes in ionic environment, generating new modalities for on‐chip chemical sensors in the micro/nanoscale.     

Partial analytical solution of a model used for measuring oxygen diffusion coefficients of polymer films by luminescence quenching

Many aspects of optical chemical sensor design would benefit from a better knowledge of the diffusion properties of the analyte in the polymer host. The response times of such sensors to a step change of analyte concentration are of vital interest for many applications of fast-responding sensors. Further, the diffusion properties govern their quenching behavior and their sensitivity. A method for determination of the diffusion constant of oxygen in polymers has been developed and used by several groups in the past. The underlying mathematical model for luminescence quenching by molecules of a gas in a single sensing layer on an impermeable support has not yet been completely derived in an analytical form and still uses tedious numerical methods. We present a partial analytical solution to the problem of modeling the time dependence of luminescence generated by in- or out-diffusion of a gaseous quencher in a polymer film in which a luminophor is immobilized and offer a suitable method to predict sensor response times.     

All-Dielectric Electrooptic Sensor Based on a Polymer Microresonator Coupled Side-Polished Optical Fiber

A novel electrooptic (EO) electric field (E-field) sensor based on side-polished fiber coupled with an EO polymer microring resonator is proposed and demonstrated. An EO polymer waveguide with a ring shape is fabricated on the polished flat of an optical fiber. Light in the fiber evanescently couples into the resonator and forms resonant modes for certain wavelengths and produces notches in the output intensity of the fiber. External electric fields change the index of refraction of the ring waveguide and therefore dither its resonant wavelengths. For light of wavelength on the slope of a resonance notch, a change in the output intensity can be detected. The sensor is all dielectric without metal layers to distort the measured E-field. The resonant structure allows the sensor to potentially have much higher sensitivity than other electrooptic sensors based on Mach-Zehnder or polarization modulation. Since electrooptic polymers have higher electrooptic coefficients, lower dielectric constants and faster electrooptic responses than inorganic crystals, higher sensitivity, lower invasiveness, and higher bandwidth of E-field sensing can be expected. This sensor eliminates unreliable fiber-to-waveguide butt coupling as well as the high propagation loss encountered in the long straight EO polymer waveguides of sensors based on Mach-Zehnder structures. By using the fiber itself as the supporting substrate of the ring waveguide, the sensor can have small size and low disturbance to the measured electric field. The concept is demonstrated using AJLS103 EO polymer. A sensitivity of 100 mV/m has been achieved at frequencies up to 550 MHz (limited by the measurement system)     

Slab waveguide with conducting interfaces as an efficient optical sensor: TE case

In this paper, three-layer slab waveguide structure is treated for optical sensing applications. Four waveguide configurations including different guiding films and analytes are assumed. A conducting two-dimensional free charge layers with a surface conductivity is assumed to exist at the substrate/film and film/cladding interfaces. The sensing sensitivity of the proposed structure to any changes in an analyte refractive index uniformly distributed in the cladding layer is investigated. Positive as well as negative surface conductivities are considered. It is found that utilizing positive surface conductivity can enhance the sensitivity, whereas using negative values of the surface conductivity reduces the sensitivity.     

Theoretical modeling of an improved all-optical flip flop based on a nonlinear semiconductor distributed feedback laser structure

A new, improved design of an all-optical flip flop is proposed. The waveguiding layer of the device consists of a phase-shifted nonlinear grating. The grating layers of a high refractive index have a negative nonlinear coefficient. A phase-shift section exists at the middle of the waveguiding layer. The optical gain is provided by current injection into an active layer. Nonlinearity in the waveguiding layer is achieved by direct absorption at the edge of the absorption band (Urbach tail). In the "OFF" state, the waveguiding layer forms a weak grating with an optical feedback below the laser threshold. In the "ON" state, the device functions as a distributed feedback (DFB) laser due to an induced strong grating in the nonlinear waveguiding layer. The improvements of the device performance by reducing the set pulse energy and accelerating the switch-off process are discussed. Field simulations in the time domain were performed.     

Direct and chemically-mediated absorption spectroscopy usingoptical fiber instrumentation

This paper shows various applications of optical fiber sensors to absorption spectroscopy. Sensors for the monitoring of chromium in sewage water and for the colorimetry of gasoline samples are presented together with sensors for radiation dosimetry in radiotherapy and for lighting control in museum environments. In all these sensors, a combination of broadband and multi-band spectral measurements are collected using the same custom instrumentation unit consisting of LED light sources and an optical fiber microspectrometer. Extensions of the unit to implement other sensors making use of visible spectral range are discussed. The custom instrumentation implemented to address these sensors is their key unifying feature. It opens the possibility of addressing other sensors making use of absorption-based optrodes which present an analyte-modulated absorption spectrum in the visible spectral range     

Hollow cylindrical waveguides for use as evanescent fluorescence-based sensors: effect of numerical aperture on collected signal

Hollow cylindrical waveguide sensors permit conventional capillary injection techniques for flowing precise volumes of a liquid sample through the sensor while exciting and collecting fluorescence by use of evanescent fields. Both a ray-optics model and experimental data show that fluorescence collected from bulk or thin-layer fluorescent samples increases strongly as the numerical aperture (N.A.) increases and is maximized when the N.A. of the excitation-collection optics matches the waveguide N.A. The dependence of fluorescence on N.A. closely resembled that reported previously for solid cylindrical waveguides. Mode mixing reduced the strength of this dependence and should be minimized to increase collected fluorescence.     

Liquid core waveguide for full imaging of electrophoretic separations

We employed a liquid core waveguide to image both DNA electrophoresis separations and isoelectric focusing of proteins. The utility of the system is demonstrated for DNA fragment sizing and protein separations. The system utilizes the liquid-core waveguide as an efficient window for both the excitation of separated samples and the collection of light through total internal reflectance, with an ability to detect target molecules in the zeptomolar range. Scanning the excitation laser along the length of the electrophoresis capillary excites individually separated analyte bands, while the fluorescence is collected end-on by an optical fiber coupled to a photomultiplier, thus, creating an image of the separation along the length of the capillary.     

In situ trace analysis of oil in water with mid-infrared fiberoptic chemical sensors

The determination of trace amounts of oil in water facilitates the forensic analysis on the presence and origin of oil in the aqueous environment. To this end, the present study focuses on direct sensing schemes for quantifying trace amounts of oil in water using mid-infrared (MIR) evanescent field absorption spectroscopy via fiberoptic chemical sensors. MIR transparent silver halide fibers were utilized as optical transducer for interrogating oil-in-water emulsions via the evanescent field emanating from the waveguide surface, and penetrating the surrounding aqueous environment by a couple of micrometers. Unmodified fibers and fibers surface-modified with grafted epoxidized polybutadiene layers enabled the direct detection of crude oil in a deionized water matrix at the ppm level to ppb concentration level, respectively. Thus, direct chemical sensing of crude oil IR signatures without any sample preparation as low as 46 ppb was achieved with a response time of a few seconds.     

Self-referencing intensity measurements based on square-wave gated phase-modulation fluorimetry

An adaptation of square-wave gated phase-modulation (GPM) fluorimetry allows for self-referenced intensity measurements without the complexity of dual excitation or dual emission wavelengths. This AC technique utilizes square-wave excitation, gated detection, a reference emitter, and a sensor molecule. The theory and experimental data demonstrating the effectiveness and advantages of the adapted GPM scheme are presented. One component must have an extremely short lifetime relative to the other. Both components are affected identically by changes in intensity of the excitation source, but the sensor intensity also depends on the concentration of the analyte. The fluctuations of the excitation source and any optical transmission changes are eliminated by ratioing the sensor emission to the reference emission. As the concentration of the analyte changes, the corresponding sensor intensity changes can be quantified through several schemes including digitization of the signal and digital integration or AC methods. To measure pH, digital methods are used with Na3[Tb(dpa)3] (dpa = 2,6-pyridinedicarboxylic acid) as the long-lived reference molecule and fluorescein as the short-lived sensor molecule. Measurements from the adapted GPM scheme are directly compared to conventional ratiometric measurements. Good agreement between the data collection methods is demonstrated through the apparent pKa. For the adapted GPM measurements, conventional measurements, and a global fit the apparent pKa values agree within less than 2%. A key element of the adapted GPM method is its insensitivity to fluctuations in the source intensity. For a roughly 8-fold change in the excitation intensity, the signal ratio changes by less than 3%.     

A Ratiometric Sensor Using Single Chirality Near‐Infrared Fluorescent Carbon Nanotubes: Application to In Vivo Monitoring

Advances in the separation and functionalization of single walled carbon nanotubes (SWCNT) by their electronic type have enabled the development of ratiometric fluorescent SWCNT sensors for the first time. Herein, single chirality SWCNT are independently functionalized to recognize either nitric oxide (NO), hydrogen peroxide (H₂O₂), or no analyte (remaining invariant) to create optical sensor responses from the ratio of distinct emission peaks. This ratiometric approach provides a measure of analyte concentration, invariant to the absolute intensity emitted from the sensors and hence, more stable to external noise and detection geometry. Two distinct ratiometric sensors are demonstrated: one version for H₂O₂, the other for NO, each using 7,6 emission, and each containing an invariant 6,5 emission wavelength. To functionalize these sensors from SWCNT isolated from the gel separation technique, a method for rapid and efficient coating exchange of single chirality sodium dodecyl sulfate‐SWCNT is introduced. As a proof of concept, spatial and temporal patterns of the ratio sensor response to H₂O₂ and, separately, NO, are monitored in leaves of living plants in real time. This ratiometric optical sensing platform can enable the detection of trace analytes in complex environments such as strongly scattering media and biological tissues.