SimilarityExplorer: A Visual Inter‐Comparison Tool for Multifaceted Climate Data

Inter‐comparison and similarity analysis to gauge consensus among multiple simulation models is a critical visualization problem for understanding climate change patterns. Climate models, specifically, Terrestrial Biosphere Models (TBM) represent time and space variable ecosystem processes, like, simulations of photosynthesis and respiration, using algorithms and driving variables such as climate and land use. While it is widely accepted that interactive visualization can enable scientists to better explore model similarity from different perspectives and different granularity of space and time, currently there is a lack of such visualization tools. In this paper we present three main contributions. First, we propose a domain characterization for the TBM community by systematically defining the domain‐specific intents for analyzing model similarity and characterizing the different facets of the data. Second, we define a classification scheme for combining visualization tasks and multiple facets of climate model data in one integrated framework, which can be leveraged for translating the tasks into the visualization design. Finally, we present SimilarityExplorer, an exploratory visualization tool that facilitates similarity comparison tasks across both space and time through a set of coordinated multiple views. We present two case studies from three climate scientists, who used our tool for a month for gaining scientific insights into model similarity. Their experience and results validate the effectiveness of our tool.     

ChangeCatcher: Increasing Inter‐author Awareness for Visualization Development

We introduce an approach for explicitly revealing changes between versions of a visualization workbook to support version comparison tasks. Visualization authors may need to understand version changes for a variety of reasons, analogous to document editing. An author who has been away for a while may need to catch up on the changes made by their co‐author, or a person responsible for formatting compliance may need to check formatting changes that occurred since the last time they reviewed the work. We introduce ChangeCatcher, a prototype tool to help people find and understand changes in a visualization workbook, specifically, a Tableau workbook. Our design is based on interviews we conducted with experts to investigate user needs and practices around version comparison. ChangeCatcher provides an overview of changes across six categories, and employs a multi‐level details‐on‐demand approach to progressively reveal details. Our qualitative study showed that ChangeCatcher's methods for explicitly revealing and categorizing version changes were helpful in version comparison tasks.     

Unveiling evolutionary algorithm representation with DU maps

Evolutionary algorithms (EAs) have proven to be effective in tackling problems in many different domains. However, users are often required to spend a significant amount of effort in fine-tuning the EA parameters in order to make the algorithm work. In principle, visualization tools may be of great help in this laborious task, but current visualization tools are either EA-specific, and hence hardly available to all users, or too general to convey detailed information. In this work, we study the Diversity and Usage map (DU map), a compact visualization for analyzing a key component of every EA, the representation of solutions. In a single heat map, the DU map visualizes for entire runs how diverse the genotype is across the population and to which degree each gene in the genotype contributes to the solution. We demonstrate the generality of the DU map concept by applying it to six EAs that use different representations (bit and integer strings, trees, ensembles of trees, and neural networks). We present the results of an online user study about the usability of the DU map which confirm the suitability of the proposed tool and provide important insights on our design choices. By providing a visualization tool that can be easily tailored by specifying the diversity (D) and usage (U) functions, the DU map aims at being a powerful analysis tool for EAs practitioners, making EAs more transparent and hence lowering the barrier for their use.     

Noodles: a tool for visualization of numerical weather model ensemble uncertainty

Numerical weather prediction ensembles are routinely used for operational weather forecasting. The members of these ensembles are individual simulations with either slightly perturbed initial conditions or different model parameterizations, or occasionally both. Multi-member ensemble output is usually large, multivariate, and challenging to interpret interactively. Forecast meteorologists are interested in understanding the uncertainties associated with numerical weather prediction; specifically variability between the ensemble members. Currently, visualization of ensemble members is mostly accomplished through spaghetti plots of a single mid-troposphere pressure surface height contour. In order to explore new uncertainty visualization methods, the Weather Research and Forecasting (WRF) model was used to create a 48-hour, 18 member parameterization ensemble of the 13 March 1993 "Superstorm". A tool was designed to interactively explore the ensemble uncertainty of three important weather variables: water-vapor mixing ratio, perturbation potential temperature, and perturbation pressure. Uncertainty was quantified using individual ensemble member standard deviation, inter-quartile range, and the width of the 95% confidence interval. Bootstrapping was employed to overcome the dependence on normality in the uncertainty metrics. A coordinated view of ribbon and glyph-based uncertainty visualization, spaghetti plots, iso-pressure colormaps, and data transect plots was provided to two meteorologists for expert evaluation. They found it useful in assessing uncertainty in the data, especially in finding outliers in the ensemble run and therefore avoiding the WRF parameterizations that lead to these outliers. Additionally, the meteorologists could identify spatial regions where the uncertainty was significantly high, allowing for identification of poorly simulated storm environments and physical interpretation of these model issues.     

Explorative Blood Flow Visualization using Dynamic Line Filtering based on Surface Features

Rupture risk assessment is a key to devise patient‐specific treatment plans of cerebral aneurysms. To understand and predict the development of aneurysms and other vascular diseases over time, both hemodynamic flow patterns and their effect on the vessel surface need to be analyzed. Flow structures close to the vessel wall often correlate directly with local changes in surface parameters, such as pressure or wall shear stress. Yet, in many existing applications, the analyses of flow and surface features are either somewhat detached from one another or only globally available. Especially for the identification of specific blood flow characteristics that cause local startling parameters on the vessel surface, like elevated pressure values, an interactive analysis tool is missing. The explorative visualization of flow data is challenging due to the complexity of the underlying data. In order to find meaningful structures in the entirety of the flow, the data has to be filtered based on the respective explorative aim. In this paper, we present a combination of visualization, filtering and interaction techniques for explorative analysis of blood flow with a focus on the relation of local surface parameters and underlying flow structures. Coherent bundles of pathlines can be interactively selected based on their relation to features of the vessel wall and further refined based on their own hemodynamic features. This allows the user to interactively select and explore flow structures locally affecting a certain region on the vessel wall and therefore to understand the cause and effect relationship between these entities. Additionally, multiple selected flow structures can be compared with respect to their quantitative parameters, such as flow speed. We confirmed the usefulness of our approach by conducting an informal interview with two expert neuroradiologists and an expert in flow simulation. In addition, we recorded several insights the neuroradiologists were able to gain with the help of our tool.     

A visualization tool of 3-D time-varying data for the simulation of tissue growth

Data Visualization affords us the ability to explore the spatial and temporal domains of many time-varying phenomena. In this article, we describe our application of visualization to a three-dimensional simulation model for tissue growth. We review the different components of the model where cellular automata is used to model populations of cells that execute persistent random walks, collide, and proliferate until they reach confluence. We then describe the system architecture of the developed visualization tool, the employed rendering techniques, and the related prototyping interfaces. We also discuss some of the visualization results obtained thus far that are pertinent to enhancing the validity of the computational model. This visualization tool could be useful in facilitating the research of scientists by providing them with meaningful means to interpret and analyze simulation data and to compare them to experimental results. Our objective in this work is to develop computer-aided design solutions that support the simulation of tissue growth and its design exploration.     

Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization

Analyzing molecular dynamics (MD) simulations is a key aspect to understand protein dynamics and function. With increasing computational power, it is now possible to generate very long and complex simulations, which are cumbersome to explore using traditional 3D animations of protein movements. Guided by requirements derived from multiple focus groups with protein engineering experts, we designed and developed a novel interactive visual analysis approach for long and crowded MD simulations. In this approach, we link a dynamic 3D focus+context visualization with a 2D chart of time series data to guide the detection and navigation towards important spatio‐temporal events. The 3D visualization renders elements of interest in more detail and increases the temporal resolution dependent on the time series data or the spatial region of interest. In case studies with different MD simulation data sets and research questions, we found that the proposed visual analysis approach facilitates exploratory analysis to generate, confirm, or reject hypotheses about causalities. Finally, we derived design guidelines for interactive visual analysis of complex MD simulation data.     

Making Parameter Dependencies of Time-Series Segmentation Visually Understandable

This work presents an approach to support the visual analysis of parameter dependencies of time-series segmentation. The goal is to help analysts understand which parameters have high influence and which segmentation properties are highly sensitive to parameter changes. Our approach first derives features from the segmentation output and then calculates correlations between the features and the parameters, more precisely, in parameter subranges to capture global and local dependencies. Dedicated overviews visualize the correlations to help users understand parameter impact and recognize distinct regions of influence in the parameter space. A detailed inspection of the segmentations is supported by means of visually emphasizing parameter ranges and segments participating in a dependency. This involves linking and highlighting, and also a special sorting mechanism that adjusts the visualization dynamically as users interactively explore individual dependencies. The approach is applied in the context of segmenting time series for activity recognition. Informal feedback from a domain expert suggests that our approach is a useful addition to the analyst's toolbox for time-series segmentation.     

Texture-based feature tracking for effective time-varying data visualization

Analyzing, visualizing, and illustrating changes within time-varying volumetric data is challenging due to the dynamic changes occurring between timesteps. The changes and variations in computational fluid dynamic volumes and atmospheric 3D datasets do not follow any particular transformation. Features within the data move at different speeds and directions making the tracking and visualization of these features a difficult task. We introduce a texture-based feature tracking technique to overcome some of the current limitations found in the illustration and visualization of dynamic changes within time-varying volumetric data. Our texture-based technique tracks various features individually and then uses the tracked objects to better visualize structural changes. We show the effectiveness of our texture-based tracking technique with both synthetic and real world time-varying data. Furthermore, we highlight the specific visualization, annotation, registration, and feature isolation benefits of our technique. For instance, we show how our texture-based tracking can lead to insightful visualizations of time-varying data. Such visualizations, more than traditional visualization techniques, can assist domain scientists to explore and understand dynamic changes.     

Statistical analysis of GaAs MESFET S-parameter equivalent-circuit models

We compare the ability of three different equivalent-circuit extraction methods to give ensembles of model parameters that accurately predict not only average S-parameters but the S-parameter statistics, i.e., the standard deviations and intercorrelations between the real and imaginary parts. Measurements were made for 400 GaAs MESFETs fabricated on a single wafer with an MBE-grown active layer. Data is compared for different biases. We find that bimodal distributions give correlations that the equivalent-circuit models fail to model. The possibility of using uncorrelated equivalent-circuit values is also discussed.     

World lines

In this paper we present World Lines as a novel interactive visualization that provides complete control over multiple heterogeneous simulation runs. In many application areas, decisions can only be made by exploring alternative scenarios. The goal of the suggested approach is to support users in this decision making process. In this setting, the data domain is extended to a set of alternative worlds where only one outcome will actually happen. World Lines integrate simulation, visualization and computational steering into a single unified system that is capable of dealing with the extended solution space. World Lines represent simulation runs as causally connected tracks that share a common time axis. This setup enables users to interfere and add new information quickly. A World Line is introduced as a visual combination of user events and their effects in order to present a possible future. To quickly find the most attractive outcome, we suggest World Lines as the governing component in a system of multiple linked views and a simulation component. World Lines employ linking and brushing to enable comparative visual analysis of multiple simulations in linked views. Analysis results can be mapped to various visual variables that World Lines provide in order to highlight the most compelling solutions. To demonstrate this technique we present a flooding scenario and show the usefulness of the integrated approach to support informed decision making.     

Scientific visualization and the Rivers Project at the NationalCenter for Supercomputing Applications

The author describes NCSA's approach to the development of visualization tools for scientists at remote locations as well as those with complex special requirements. The Rivers (Research on Interactive Visual Environments) Project is an interesting and potentially important attempt to extend high-end visualization to the interactive steering of supercomputer simulations. Other groups at NCSA deal with `routine' graphics, with custom high-quality animations for scientists, and with the development of toolsets ranging from generating color palettes to volume visualization     

Visualizing large-scale uncertainty in astrophysical data

Visualization of uncertainty or error in astrophysical data is seldom available in simulations of astronomical phenomena, and yet almost all rendered attributes possess some degree of uncertainty due to observational error. Uncertainties associated with spatial location typically vary signicantly with scale and thus introduce further complexity in the interpretation of a given visualization. This paper introduces effective techniques for visualizing uncertainty in large-scale virtual astrophysical environments. Building upon our previous transparently scalable visualization architecture, we develop tools that enhance the perception and comprehension of uncertainty across wide scale ranges. Our methods include a unified color-coding scheme for representing log-scale distances and percentage errors, an ellipsoid model to represent positional uncertainty, an ellipsoid envelope model to expose trajectory uncertainty, and a magic-glass design supporting the selection of ranges of log-scale distance and uncertainty parameters, as well as an overview mode and a scalable WIM tool for exposing the magnitudes of spatial context and uncertainty.     

Visualizing Time‐Specific Hurricane Predictions,with Uncertainty,from Storm Path Ensembles

The U.S. National Hurricane Center (NHC) issues advisories every six hours during the life of a hurricane. These advisories describe the current state of the storm, and its predicted path, size, and wind speed over the next five days. However, from these data alone, the question “What is the likelihood that the storm will hit Houston with hurricane strength winds between 12:00 and 14:00 on Saturday?” cannot be directly answered. To address this issue, the NHC has recently begun making an ensemble of potential storm paths available as part of each storm advisory. Since each path is parameterized by time, predicted values such as wind speed associated with the path can be inferred for a specific time period by analyzing the statistics of the ensemble. This paper proposes an approach for generating smooth scalar fields from such a predicted storm path ensemble, allowing the user to examine the predicted state of the storm at any chosen time. As a demonstration task, we show how our approach can be used to support a visualization tool, allowing the user to display predicted storm position – including its uncertainty – at any time in the forecast. In our approach, we estimate the likelihood of hurricane risk for a fixed time at any geospatial location by interpolating simplicial depth values in the path ensemble. Adaptivelysized radial basis functions are used to carry out the interpolation. Finally, geometric fitting is used to produce a simple graphical visualization of this likelihood. We also employ a non‐linear filter, in time, to assure frame‐to‐frame coherency in the visualization as the prediction time is advanced. We explain the underlying algorithm and definitions, and give a number of examples of how our algorithm performs for several different storm predictions, and for two different sources of predicted path ensembles.     

Object-oriented visualization

Feature based techniques incorporated into standard visualization algorithms can greatly enhance the quantification and visualization of observed phenomena, as described in the article. The methods to isolate and recognize coherent 3D structures are analogous to 2D vision techniques. The overall goals are the same in both fields, namely, to interpret an image (data) and construct a model to describe it. Although the article uses data sets from numerical simulations of fluid flow, the concepts are applicable to other domains where scientists study the evolution and morphologies of 4D space time vector and scalar fields. More work is needed to explore complex features based upon domain specific knowledge and to define the parameters for classification and tracking. Sophisticated databases for storage and retrieval of feature based data sets are also an interesting area of study. The ultimate goal of visualization is to aid in the understanding and analysis of data. With faster parallel computers and more sophisticated laboratory equipment, information is being produced in ever greater amounts. This information must be presented to the scientist in a form suitable for cogent assimilation and manipulation. The article presents issues and algorithms for an object oriented approach to this problem and demonstrates its usefulness for visualization     

Radar detection of high-energy cosmic rays in non-Gaussian background using a time-frequency technique

Cosmic rays are the highest-energy observable particles in the universe. Their study opens a new frontier for scientists to better understand the nature of the universe. This paper reports our study of a bistatic radar approach that is being developed for remote sensing of cosmic-ray induced air showers. In this context, we propose a robust detection technique based on time-frequency domain for the received radar echoes. These echoes are modeled as linear-downward chirp signals, characterized by very short sweep periods, low energies, and corrupted by non-stationary and non-Gaussian background noise. In addition, the related parameters of the received echoes are variable within some expected ranges, determined by the physical parameters of the air showers. In this paper, we explore the performance of the proposed detection method through an extensive theoretical analysis. We derive formulae for probability of the correct detection, as well as false-alarm rate. Numerical simulations and experimental results that corroborate our analysis are also presented.     

Comparative Visual Analysis of Structure‐Performance Relations in Complex Bulk‐Heterojunction Morphologies

The structure of Bulk‐Heterojunction (BHJ) materials, the main component of organic photovoltaic solar cells, is very complex, and the relationship between structure and performance is still largely an open question. Overall, there is a wide spectrum of fabrication configurations resulting in different BHJ morphologies and correspondingly different performances. Current state‐of‐the‐art methods for assessing the performance of BHJ morphologies are either based on global quantification of morphological features or simply on visual inspection of the morphology based on experimental imaging. This makes finding optimal BHJ structures very challenging. Moreover, finding the optimal fabrication parameters to get an optimal structure is still an open question. In this paper, we propose a visual analysis framework to help answer these questions through comparative visualization and parameter space exploration for local morphology features. With our approach, we enable scientists to explore multivariate correlations between local features and performance indicators of BHJ morphologies. Our framework is built on shape‐based clustering of local cubical regions of the morphology that we call patches. This enables correlating the features of clusters with intuition‐based performance indicators computed from geometrical and topological features of charge paths.