A theoretical study of substrate-induced activation of dienelactone hydrolase

Dienelactone hydrolase (DLH), an enzyme from the ß-ketoadipatepathway, catalyses the hydrolysis of dienelactone to maleylacetate.DLH is unusual because it is the only known naturally occurringenzyme which contains the catalytic triad Cys...His...Asp. Thistriad has previously been created artificially in the mutantserine proteases, thiol subtilisin and thiol trypsin. In bothcases the mutant enzymes exhibited activities several ordersof magnitude lower than the wild type enzymes; the low reactivityhas generally been attributed to the inability of these enzymesto form a catalytically active thiolate anion (Cys^– ...His⁺...Asp^–).The crystal structure of DLH suggests that the native enzymeexists predominantly in a catalytically inert configuration;the triad cysteine is neutral and points away from the activesite binding cleft. However, a crystallographic analysis ofC123S DLH complexed with an isostructural inhibitor (dienelactam)indicates that substrate binding induces a prototropic rearrangementof the active site prior to catalysis which results in the formationof a highly nucleophilic thiolate anion. We have performed abinitio SCF/MP2 calculations on a relatively small portion ofthe active site of DLH to examine the details of this activationprocess. Our calculations provide supporting evidence that theconformational changes observed in the crystal structure dueto inhibitor (or substrate) binding facilitate the formationof a reactive thiolate anion. In particular, substrate bindingalters the position of Glu36; the carboxylate side chain ofGlu36 is pushed towards C123 enabling it to abstract the thiolproton thus creating a catalytically active thiolate anion.The calculations also provide a possible explanation for thelow reactivities observed in the mutant serine proteases.     

A lysine to arginine substitution at position 146 of rabbit aldolase A changes the rate-determining step to Schiff base formation

Lys146 of rabbit aldolase A [D-fructose-1,6-bis(phosphate):D-glyceraldehyde-3-phosphate lyase, EC 4.1.2.13 [EC] ] was changedto arginine by site-directed mutagenesis. The k_cat of the resultingmutant protein, K146R, was 500 times slower than wild-type insteady-state kinetic assays for both cleavage and condensationof fructose-1,6-bis(phosphate), while the Km for this substratewas unchanged. Analysis of the rate of formation of catalyticintermediates showed K146R was significantly different fromthe wild-type enzyme and other enzymes mutated at this site.Single-turnover experiments using acid precipitation to trapthe Schiff base intermediate on the wild-type enzyme failedto show a build-up of this intermediate on K146R. However, K146Rretained the ability to form the Schiff base intermediate asshown by the significant amounts of Schiff base intermediatetrapped with NaBH₄. In the single-turnover experiments it appearedthat the Schiff base intermediate was converted to productsmore rapidly than it was produced. This suggested a maximalrate of Schiff base formation of 0.022 s^–1, which wasclose to the value of k_cat for this enzyme. This observationis strikingly different from the wild-type enzyme in which Schiffbase formation is >100 times faster than k_cat. For K146Rit appears that steps up to and including Schiff base formationare rate limiting for the catalytic reaction. The carbanionintermediate derived from either substrate or product, and theequilibrium concentrations of covalent enzyme-substrate intermediates,were much lower on K146R than on the wild-type enzyme. The greaterbulk of the guanidino moiety may destabilize the covalent enzyme-substrateintermediates, thereby slowing the rate of Schiff base formationsuch that it becomes rate limiting. The K146R mutant enzymeis significantly more active than other enzymes mutated at thissite, perhaps because it maintains a positively charged groupat an essential position in the active site or perhaps the Argfunctionally substitutes as a general acid/base catalyst inboth Schiff base formation and in subsequent abstraction ofthe C4-hydroxyl proton.     

Probing the nature of substrate binding in Humicola lanuginosa lipase through X-ray crystallography and intuitive modelling

The catalytic triad of the neutral lipase from Humicola lanuginosais buried by a short helix under aqueous conditions renderingthe enzyme inactive. Upon adsorption to a lipid substrate interfacethis helix is displaced, thereby exposing the active site (interfacialactivation). By covalently linking inhibitors to the activeserine, it is possible to crystallize the enzyme in an interfaciallyactivated state. Two such structures are reported here whichmimic the tetrahedral transition states of lipolysis. To date,no crystal structures of a lipase–triglyceride complexexist for this enzyme. Therefore, possible interactions betweenthis lipase and its substrate have been analysed through molecularmodelling.     

Alteration of aspartate 101 in the active site of Escherichia coli alkaline phosphatase enhances the catalytic activity

The function of aspartic acid residue 101 in the active siteof Escherichia coli alkaline phosphatase was investigated bysite-specific mutagenesis. A mutant version of alkaline phosphatasewas constructed with alanine in place of aspartic acid at position101. When kinetic measurements are carried out in the presenceof a phosphate acceptor, 1.0 M Tris, pH 8.0, both the k_cat andthe K_m, for the mutant enzyme increase by –2-fold, resultingin almost no change in the k_cat/K_m ratio. Under conditions ofno external phosphate acceptor and pH 8.0, both the k_cat andthe K_m for the mutant enzyme decrease by {small tilde}2-fold,again resulting in almost no change in the k_cat/K_m ratio. Thek_cat for the hydrolysis of 4-methyl-umbelliferyl phosphate andp-nitrophenyl phosphate are nearly identical for both the wild-typeand mutant enzymes, as is the K₁ for inorganic phosphate. Thereplacement of aspartic acid 101 by alanine does have a significanteffect on the activity of the enzyme as a function of pH, especiallyin the presence of a phosphate acceptor. At pH 9.4 the mutantenzyme exhibits 3-fold higher activity than the wild-type. Themutant enzyme also exhibits a substantial decrease in thermalstability: it is half inactivated by treatment at 49°C for15 min compared to 71°C for the wild-type enzyme. The datareported here suggest that this amino acid substitution altersthe rates of steps after the formation of the phospho-enzymeintermediate. Analysis of the X-ray structure of the wild-typeenzyme indicates that the increase in catalytic rate of themutant enzyme in the presence of a phosphate acceptor may bedue to an increase in accessibility of the active site nearSerl02. The increased catalytic rate of this mutant enzyme maybe utilized to improve diagnostic tests that require alkalinephosphatase, and the reduced heat stability of the mutant enzymemay make it useful in recombinant DNA techniques that requirethe ability to heat-inactivate the enzyme after use.     

Evidence for the involvement of tyrosine-69 in the control of stereospecificity of porcine pancreatic phospholipase A2

We have studied the role of Tyr-69 of porcine pancreatic phospholipaseA₂ in catalysis and substrate binding, using site-directed mutagenesis.A mutant was constructed containing Phe at position 69. Kineticcharacterization revealed that the Phe-69 mutant has retainedenzymatic activity on monomeric and micellar substrates, andthat the mutation has only minor effects on k_cat and K_m. Thisshows that Tyr-69 plays no role in the true catalytic eventsduring substrate hydrolysis. In contrast, the mutation has aprofound influence on the stereospecificity of the enzyme. Whereasthe wild-type phospholipase A₂ is only able to catalyse thedegradation of sn-3 phospholipids, the Phe-69 mutant hydrolysesboth the sn-3 isomers and, at a low (1–2%) rate, the sn-1isomers. Despite the fact that the stereospecificity of themutant phospholipase has been altered, Phe-69 phospholipasestill requires Ca²⁺ ions as a cofactor and also retains itsspecificity for the sn-2 ester bond. Our data suggest that inporcine pancreatic phospholipase A₂ the hydroxyl group of Tyr-69serves to fix and orient the phosphate group of phospholipidmonomers by hydrogen bonding. Because no such interaction canoccur between the Phe-69 side-chain and the phosphate moietyof the substrate monomer, the mutant enzyme loses part of itsstereospecificity but not its positional specificity.     

Engineering ribonuclease A: production, purification and characterization of wild-type enzyme and mutants at Gln11

Bovine pancreatic ribonuclease A (RNase A) has been the objectof much landmark work in biological chemistry. Yet the applicationof the techniques of protein engineering to RNase A has beenlimited by problems inherent in the isolation and heterologousexpression of its gene. A cDNA library was prepared from cowpancreas, and from this library the cDNA that codes for RNaseA was isolated. This cDNA was inserted into expression plasmidsthat then directed the production of RNase A in Saccharomycescerevisiae (fused to a modified -factor leader sequence) orEscherichia coli (fused to the pelB signal sequence). RNaseA secreted into the medium by S.cerevisiae was an active buthighly glycosylated enzyme that was recoverable at 1 mg/l ofculture. RNase A produced by E.coli was in an insoluble fractionof the cell lysate. Oxidation of the reduced and denatured proteinproduced active enzyme which was isolated at 50 mg/l of culture.The bacterial expression system is ideal for the large-scaleproduction of mutants of RNase A. This system was used to substitutealanine, asparagine or histidine for Gln11, a conserved residuethat donates a hydrogen bond to the reactive phosphoryl groupof bound substrate. Analysis of the binding and turnover ofnatural and synthetic substrates by the wild-type and mutantenzymes shows that the primary role of Gln11 is to prevent thenon-productive binding of substrate.     

FK506-binding protein mutational analysis: defining the active-site residue contributions to catalysis and the stability of ligand complexes

The 12 kDa FK506-binding protein FKBP12 is a cis-trans peptidyl-prolylisomerase that binds the macrolides FK506 and rapamycin. Wehave examined the role of the binding pocket residues of FKBP12in protein–ligand interactions by making conservativesubstitutions of 12 of these residues by site-directed mutagenesis.For each mutant FKBP12, we measured the affinity for FK506 andrapamycin and the catalytic efficiency in the cis–transpeptidyl-prolyl isomerase reaction. The mutation of Trp59 orPhe99 generates an FKBP12 with a significantly lower affinityfor FK506 than wild-type protein. Tyr26 and Tyr82 mutants areenzymatically active, demonstrating that hydrogen bonding bythese residues is not required for catalysis of the cis–transpeptidyl-prolyl isomerase reaction, although these mutationsalter the substrate specificity of the enzyme. We conclude thathydrophobic interactions in the active site dominate in thestabilization of FKBP12 binding to macrolide ligands and tothe twisted-amide peptidyl-prolyl substrate intermediate.     

Contribution of a salt bridge to binding affinity and dUMP orientation to catalytic rate: mutation of a substrate-binding arginine in thymidylate synthase

Invariant arginine 179, one of four arginines that are conservedin all thymidylate synthases (TS) and that bind the phosphatemoiety of the substrate 2'-deoxyuridine-5'-monophosphate (dUMP),can be altered even to a negatively charged glutainic acid withlittle effect on k_cat. In the mutant structures, ordered wateror the other phosphate binding arginines compensate for thehydrogen bonds made by Arg179 in the wild-type enzyme and thereis almost no change in the conformation or binding site of dUMP.Correlation of dUMP K_ds for TS R179A and TS R179K with the structuresof their binary complexes shows that the positive charge onArg179 contributes significantly to dUMP binding affinity. k_cat/Kmfor dUMP measures the rate of dUMP binding to TS during theordered bi-substrate reaction, and in the ternary complex dUMPprovides a binding surface for the cofactor. k_cat/Km reflectsthe ability of the enzyme to accept a properly oriented dUMPfor catalysis and is less sensitive than is K_d to the changesin electrostatics at the phosphate binding site.     

Site-directed mutagenesis of glyceraldehyde-3-phosphate dehydrogenase reveals the role of residue Ser148

A mutant of Bacillus stearothermophilus D-glyceraldehyde-3-phosphatedehydrogenase, Ser¹⁴⁸ – Ala, was produced byoligonucleotide-directedmutagenesis. The study of the catalytic properties of this mutanthas shown that this mutation significantly affects the Michaelisconstant of inorganic phosphate and to a lesser extent thatof 1,3-diphosphoglycerate and D-glyceraldehyde-3-phosphate.This result is consistent with model-building studies whichshow that, for the phosphorylation step of catalysis, inorganicphosphate must bind to the anion recognition site designatedP_i with the C(3) phosphate of the acyl-enzyme intermediate inthe alternative anion site P_s. Studies of the enantiomeric specificityusing D- and L-glyceraldehyde as substrates show that the hydroxylgroup of Ser¹⁴⁸, combined with the presence of the C(3) phosphateof the substrate, enhances stereospecificity as well as catalysis.However, the stereospecific effect cannot be a consequence ofthe direct interaction of Ser¹⁴⁸ with the C(2)-hydroxyl of thesubstrate. The changed K_m for glyceraldehyde-3-phosphate suggeststhat the initial step of hemithioacetal formation may take placewith its C(3) phosphate bound in the P_i site. This supportsthe molecular mechanism proposed by Moody (1984). Therefore,catalysis could be enhanced through interactions of the serinehydroxyl group not only with inorganic phosphate but also withthe C(3) phosphate of glyceraldehyde-3-phosphate.     

Autocatalytic processing of pro-papaya proteinase IV is prevented by crowding of the active-site cleft

The DNA coding for pro-papaya proteinase IV (PPIV) has beencloned and expressed in Escherichia coli. Heterologous expressionof the protein, followed by refolding in vitro, yields an enzymaticallyactive pro-enzyme which fails to autodigest to form the matureprotein. Mutagenesis of the active site of papain to simulatethat of PPIV yields a proenzyme which also fails to autoactivate.Complementarymutagenesis of the pro-region/mature boundary ofPPIV, to introduce its own substrate recognition sequence, has,however, produced a pro-enzyme that will autocatalytically cleave.This is the first report of enzymatic activity in a recombinantpro-cysteine proteinase, and the first time that such a proteinhas been shown to fail to autocatalytically cleave because ofits stringent substrate specificity.     

Lysozyme requires fluctuation of the active site for the manifestation of activity

Mutations around His15 which lie far away from the active site,stimulated glycol chitin activity of lysozyme at physiologicaltemperature. Del-Argl4Hisl5 lysozyme, a mutant lysozyme whoseArgl4 and Hisl5 were deleted together, and has the highest activityamong these mutant lysozymes, had a similar binding abilityto a trimer of N-acetyl-glucosamine, a substrate analogue, relativeto native lysozyme. This suggests that the increased activitywas due to an increased k_cat in the catalysis reaction. TheH-D exchange rate of the N-1 proton in the Trp63 which is locatedin the active site cleft, was enhanced in the Del-Argl4Hisl5lysozyme, while 2-D proton NMR analysis revealed no conformationalchange around Trp63. We conclude that some sort of fluctuationat the active site might be required for the manifestation ofactivity. This theory is supported by the finding that the Del-Argl4Hisl5lysozyme showed a shift in temperature dependency of activityto lower temperatures compared with that of native lysozyme.     

An unequivocal example of cysteine proteinase activity affected by multiple electrostatic interactions

The role of electrostatic interactions between the ionizableAsp158 and the active site thiolate-imidazolium ion pair ofsome cysteine proteinases has been the subject of controversyfor some time. This study reports the expression of wild typeprocaricain and Asp158Glu, Asp158Asn and Asp158Ala mutants fromEscherichia coli. Purification of autocatalytically maturedenzymes yielded sufficient fully active material for pH (k_cat/K_m)profiles to be obtained. Use of both uncharged and charged substratesallowed the effects of different reactive enzyme species tobe separated from the complications of electrostatic effectsbetween enzyme and substrate. At least three ionizations aredetectable in the acid limb of wild type caricain and the Gluand Asn mutants. Only two pK_a, values, however, are detectablein the acid limb using the Ala mutant. Comparison of pH activityprofiles shows that whilst an ionizable residue at position158 is not essential for the formation of the thiolate-imidazoliumion pair, it does form a substantial part of the electrostaticfield responsible for increased catalytic competence. Changingthe position of this ionizable group in any way reduces activity.Complete removal of the charged group reduces catalytic competenceeven further. This work indicates that hydronations distantto the active site are contributing to the electrostatic effectsleading to multiple active ionization states of the enzyme.     

Analysis of the reaction mechanism and substrate specificity of haloalkane dehalogenases by sequential and structural comparisons

Haloalkane dehalogenases catalyse environmentally importantdehalogenation reactions. These microbial enzymes representobjects of interest for protein engineering studies, attemptingto improve their catalytic efficiency or broaden their substratespecificity towards environmental pollutants. This paper presentsthe results of a comparative study of haloalkane dehalogenasesoriginating from different organisms. Protein sequences andthe models of tertiary structures of haloalkane dehalogenaseswere compared to investigate the protein fold, reaction mechanismand substrate specificity of these enzymes. Haloalkane dehalogenasescontain the structural motifs of /ß-hydrolases and epoxidaseswithin their sequences. They contain a catalytic triad withtwo different topological arrangements. The presence of a structurallyconserved oxyanion hole suggests the two-step reaction mechanismpreviously described for haloalkane dehalogenase from Xanthobacterautotrophicus GJ10. The differences in substrate specificityof haloalkane dehalogenases originating from different speciesmight be related to the size and geometry of an active siteand its entrance and the efficiency of the transition stateand halide ion stabilization by active site residues. Structurallyconserved motifs identified within the sequences can be usedfor the design of specific primers for the experimental screeningof haloalkane dehalogenases. Those amino acids which were predictedto be functionally important represent possible targets forfuture site-directed mutagenesis experiments.     

Fluorescent properties of the Escherichia coli D-xylose isomerase active site

The consequences of active site mutations of the Escherichiacoli D-xylose isomerase (E.C. 5.3.1.5 [EC] ) on substrate bindingwere examined by fluorescence spectroscopy. Site-directed mutagenesisof conserved tryptophan residues in the E.coli enzyme (Trp49and Trpl88) reveals that fluorescence quenching of these residuesoccurs during the binding of xylose by the wild-type enzyme.The fluorescent properties of additional active site substitutionsat His101 were also examined. Substitutions of His101 whichinactivate the enzyme were shown to have altered spectral characteristics,which preclude detection of substrate binding. In the case ofH101S, a mutant protein with measurable isomerizing activity,substrate binding with novel fluorescent properties was observed,possibly the bound pyranose form of xylose under steady-stateconditions.     

Chemical modification and site-directed mutagenesis of Tyr36 of 3-isopropylmalate dehydrogenase from Thermits thermophUus HB8

3-Isopropylmalate dehydrogenase from an extreme thermo-phile,Thermus thermophUus HB8, was chemically modified with tetranitromethanewhich nitrated 1.5-2.0 Tyr residues per subunit. The nitrationwas biphask and parallel to the loss of activity. The modifiedresidue in the first phase was identified to be Tyr36, whichis distantly located from the active site of the enzyme. Thefunction of Tyr36 was investigated by site-specific replacementwith Phe. The Michaelis constant for the substrate or co-enzymewas not altered by the replacement, whereas the catalytic constantdecreased down to -5%. X-ray analysis of the mutant enzyme revealedthat Arg94 moved the largest distance among the active siteresidues, that is, the NH1 and NH2 of the guanidino group moved1.11 and 1.32 Å respectively. The results suggest thatArg94 is responsible for the enzyme catalysis     

Phage-enzymes: expression and affinity chromatography of functional alkaline phosphatase on the surface of bacteriophage

We have demonstrated that an active enzyme can be expressedon the surface of a bacteriophage. The gene encoding alkalinephosphatase from Escherichia coli was cloned upstream of gene3, which encodes a minor coat protein of the filamentous bacteriophage,fd. A fusion protein of the correct size was detected from viralparticles by Western blotting. Ultrafiltration confirmed thatthe enzyme fusion behaves as part of a larger structure as wouldbe expected of an enzyme fused to a viral particle. Both wild-typealkaline phosphatase (Argl66) and an active site mutant (Ala166) expressed in this way retain catalytic activity and havequalitatively similar kinetic properties to free enzyme. Valueswere obtained for K_m of 72.7 and 1070 µM respectivelywhilst relative k_cat for the mutant was 36% of that for wild-type.Phage particles expressing alkaline phosphatase were bound toan immobilized inhibitor (arsenate-Sepharose) and eluted withproduct (20 mM inorganic phosphate). In this way, the functionalenzyme is co-purified with the DNA encoding it. This may permita novel approach to enzyme engineering based on affinity chromatographyof mutant enzymes expressed on the phage surface.     

Expression of catalytically active hamster dihydroorotase domain in Escherichia coli: purification and characterization

Dihydroorotase is the central domain of trifunctional L-dihydroorotatesynthetase which also contains carbamyl phosphate synthetaseat the N-terminus and aspartate transcarbamylase at the C-terminus.The cDNA, corresponding to the active dihydroorotase domainas isolated after digestion of dihydroorotate synthetase withelastase, has been sub-cloned into the expression vector pCW12which was then used to transform Escherichia coli SØ1263pyrC^– lacking dihydroorotase activity. However, inductionof this recomhinant strain with IPTG produced large amountsof the dihydroorotase domain which were completely inactive.A number of cDNAs were expressed which were longer on the C-terminalside; all cDNAs expressed active dihydroorotase domain downto a minimal extension of 12 ammo adds (-Val- Pro-Pro-Gly-Tyr-GIy-Gm-Asp-Val-Arg-Lys-Trp)into the bridge region between the dihydroorotase and aspartatetranscarbamylase domains. Part of this dodecapeptide may forman amphipathk helix which in some way constrains the isolated,recombinant dihydroorotase domain to an active conformation.The recombinant hamster dihydroorotase purified from a cell-freeextract of E.coli in four steps has a turnover number of 297mol/min/(mol domain) for the conversion of L-dihydroorotateback to N-carbamyl-Laspartate with K₈ = 8.7 ± 1.5 µMfor L-dihydroorotate, a subunit molecular weight of 39 008 determinedfrom the sequence and 37 900 ± 400 when subjected toSDS–PAGE, and an isoelectric point of 5.7. Ultracentrifugalanalysis of the recombinant domain showed a single species ofs_20,w = 4.1 S and a single molecular species of M_r = 76 000corresponding to a dimer.     

Protein engineering of alcohol dehydrogenase -- 1. Effects of two amino acid changes in the active site of yeast ADH-1

One of the promises held out by protein engineering is the abilityto alter predictably the properties of an enzyme to enable itto find new substrates or catalyse existing substrates moreefficiently, such manipulations being of interest both enzymologicallyand, potentially, industrially. It has been postulated thatin yeast alcohol dehydrogenase (YADH-1) certain amino acidssuch as Trp 93 and Thr 48 constrict the active site due to theirbulky side chains and thus impede catalysis of molecules largerthan ethanol. To study effects of enlarging the active sitewe have made two changes into YADH-1, replacing Trp 93 withPhe and Thr 48 with Ser. Kinetic experiments showed that thisenzyme had marked increases in reaction velocity for the n-alcoholspropanol, butanol, pentanol, hexanol, heptanol, octanol andcinnamyl alcohol compared to the parent, agreeing with the predictionthat expanding the active site should facilitate the oxidationof larger alcohols. The substrate affinities were slightly reducedin the altered enzyme, possibly due to its having reduced hydrophobicityat Phe 93.     

Peroxynitrite modification of glutathione reductase: modeling studies and kinetic evidence suggest the modification of tyrosines at the glutathione disulfide binding site

The catalytic properties of glutathione reductase for its substrate,glutathione disulfide, were altered following a 60 s exposureto a 100-fold molar excess of peroxynitrite; the K_M value wasincreased by {small tilde}2.5-fold and the V_max value was decreasedby {small tilde}1.7-fold. The kinetic alterations are thoughtto result from nitrotyrosine formation as the intrinsic Tyrfluorescence is diminished. The UV-visible spectrum of glutathionereductase exhibited absorbance at {small tilde}423 nm, characteristicof nitrotyrosine. In addition, the presence of nitrotyrosinehas been detected by Western immunoblots with an anti-nitrotyrosineantibody. The peroxynitrite-induced inactivation is not observedin the presence of excess glutathione disulfide. However, excessNADPH offered no protection against peroxynitriteinduced inactivation.These observations suggest that the modification of {small tilde}1.8Tyr per subunit, at or near the glutathione disulfide bindingdomain, probably results in the observed catalytic alterations.To test this hypothesis, the two tyrosines closest to the glutathionedisulfide binding domain (Tyr114 and Tyr106), as indicated bythe X-ray crystallographic data [Karplus and Schulz (1989) J.Biol. Chem, 210,163–180], were each converted to nitrotyrosinesby molecular modeling and the structure energy was minimized.These theoretical calculations indicate that the bond lengthsbetween Tyr114-O and the Gly-N and Cys II-N of glutathione disulfidebound to glutathione reductase (Karplus and Schulz, 1989) increasedby 3.0 and 4.3 Å, respectively, upon nitration. In thecase of Tyr106, the O–Cys II-N distance also increasesby {small tilde}1.6 Å. The loss of these hydrogen bondingcontacts is likely to result in the observed catalytic alterationsupon reaction with peroxy-nitrite.     

Protein engineering loops in aspartic proteinases: site-directed mutagenesis, biochemical characterization and X-ray analysis of chymosin with a replaced loop from rhizopuspepsin

The loop exchange mutant chymosm 155–164 rhizopuspepsinwas expressed in Trichoderma reesei and exported into the mediumto yield a correctly folded and active product. The biochemicalcharacterization and crystal structure determination at 2.5Å resolution confirm that the mutant enzyme adopts a nativefold. However, the conformation of the mutated loop is unlikethat in native rhizopuspepsin and involves the chelation ofa water molecule in the loop. Kinetic analysis using two syntheticpeptide substrates (six and 15 residues long) and the naturalsubstrate, milk, revealed a reduction in the activity of themutant enzyme with respect to the native when acting on boththe long peptide substrate and milk. This may be a consequenceof the different charge distribution of the mutated loop, itsincreased size and/or its different conformation.