Determinants of temperature in small coastal embayments of Lake Ontario

Along 25 km of the Lake Ontario shoreline near Toronto, Ontario, small coastal embayments (0.4–32 ha) have been constructed or modified by lake-infilling to restore warmwater fish habitat. The variation in thermal habitat quality for warmwater fishes among these embayments is very high; temperatures range from those found within a small pond to those of much cooler Lake Ontario. Since meteorological conditions and surface heat fluxes are almost identical, the temperature variation among embayments must be caused by differences in bathymetry or exchange with Lake Ontario. However, a previous study on these embayments found paradoxically that temperatures were not strongly associated with channel size or embayment bathymetry. This paper resolves the paradox by showing that flushing times for almost all of the constructed embayments were less than 1 day, and often less than 12 h. With so little time to warm within the embayments, water temperatures of almost all embayments remained very close to the temperatures of the adjacent lake waters. The coldest embayments connected directly to open Lake Ontario and warmer embayments connected to Lake Ontario through other embayments or protected harbors, where the inflowing water from Lake Ontario had already substantially warmed. To allow embayments along the exposed shoreline of Toronto to reach acceptable temperatures for warmwater fish, we use heat budgets to calculate that average summer flushing times must be increased from their current length of 1.5 to 5.5 h to approximately 30 h. Such changes could be achieved through large reductions in the channel cross section.     

Evidence of successful river spawning by lake trout (Salvelinus namaycush) in the Lower Niagara River,Lake Ontario

Restoration of a wild-produced lake trout Salvelinus namaycush population in Lake Ontario has not been successful despite the adult population often meeting or exceeding restoration targets. Lack of high-quality spawning habitat in Lake Ontario is suggested as one impediment to recruitment of wild lake trout, although the quantity and location of spawning habitat is poorly understood. If high-quality spawning habitat is limited in Lake Ontario, lake trout may be using uncommon spawning locations such as rivers. Anecdotal angler accounts point to the Niagara River as a lake trout spawning location. To better understand the potential of the Niagara River as a spawning location, egg and juvenile fish collections were conducted 12–14 river kilometers from the mouth of the Niagara River from 2010 to 2012; and mature female lake trout with surgically implanted acoustic tags were monitored from 2015 to 2019. Genetic analyses confirmed 60% of collected eggs and 93% of collected post-hatch juvenile fish in the Niagara River were lake trout. Tagged female lake trout returned to the Niagara River over consecutive years during the spawning season. The short duration of lake trout presence in the river (mean = 56 days/year) suggests female lake trout use the Niagara River primarily for spawning. Diversity in spawning locations may provide lake trout population’s resilience against environmental variability through a portfolio effect. Improved identification of riverine spawning locations, including their overall contribution to wild recruitment, may be a useful tool for managers to restore a wild-produced population of lake trout in Lake Ontario.     

Thermal habitat characteristics for warmwater fishes in coastal embayments of Lake Ontario

Along 40 km of the Lake Ontario shoreline near Toronto, Ontario, small coastal embayments (4.38-848 × 10³ m²) have been constructed or modified by lake-infilling to restore warmwater fish habitat. We describe how the thermal regimes of these embayments differ from those of small inland lakes, how embayment bathymetry alters the degree of exchange with Lake Ontario, and predict how embayment thermal regimes affect warmwater fish growth. The accumulated growing-degree days, calculated from a 14 °C baseline (∑ GDD₁₄), of seven South-Central Ontario inland lakes and an embayment disconnected from Lake Ontario ranged from 844 to 1157 GDD. Compared to the inland lakes and disconnected embayment, the coastal embayments connected to Lake Ontario achieved fewer ∑ GDD₁₄ and had a greater range, 390-1047, reflecting differences in their degree of exchange with and the cooling effect of Lake Ontario. The thermal regime of coastal embayments differs most from inland lakes during May-late-July. During early summer, mean embayment depth explains over 50% of the variability in ∑ GDD₁₄, with deeper embayments cooling more from lake exchange than shallow embayments. After mid-summer, the cooling embayments are warmed by exchanges with Lake Ontario. This late-summer warming is insufficient to compensate for the cooling effect of the Lake earlier in the summer. Bioenergetic simulations of bluegill, Lepomis macrochirus, growth indicate that most of these embayments are too cool for adequate summer growth of YOY sunfish. Nevertheless, small coastal embayments that are shallow with suitable controls on exchange with the Lake can provide acceptable warmwater fish habitat.     

Development of a fish‐based index of biotic integrity (FIBI) for monitoring riverine ecosystems in the Lake Victoria drainage Basin,Kenya

The long term monitoring of aquatic ecosystems based on chemical analysis is expensive resulting in a lack of time series data for management purposes thus necessitating the need for new cost effective methodologies. This study developed a fish‐based index of biotic integrity (FIBI) for monitoring environmental conditions in riverine ecosystems within the Lake Victoria Basin, Kenya. The fish fauna in the basin is poorly studied, less diverse and ecologically specialized than the temperate fauna that provided the origins of the Index of Biotic Integrity. Fish samples were collected by electrofishing from 24 sites during baseflow periods in February, March and July 2004. Validation data were collected from 7 sites with varying levels of degradation. Fish samples were identified, counted and grouped into different trophic groups, relative tolerance to pollution, habitat guild and whether exotic or native to riverine environment. Thirty‐three candidate metrics were evaluated for responsiveness to habitat quality and twelve were selected for inclusion in the final index. The index classified 6 of the 7 validation sites according to their levels of degradation. As a bioassessment tool, the index was useful in laying the basis for long‐term monitoring of rivers in the Lake Victoria drainage basin. Copyright © 2010 John Wiley & Sons, Ltd.     

Habitat use by subyearling Chinook and coho salmon in Lake Ontario tributaries

The habitat use of subyearling Chinook salmon (Oncorhynchus tshawytscha) and coho salmon (Oncorhynchus kisutch) was examined in three tributaries of Lake Ontario. A total of 1781 habitat observations were made on Chinook salmon (698) and coho salmon (1083). During both spring and fall, subyearling coho salmon used pool habitat with abundant cover. During spring, principal component analysis revealed that water depth was the most important variable governing subyearling Chinook salmon habitat use. Substrate materials used by Chinook salmon in the spring and coho salmon in the fall were significantly smaller than were present on average within the study reaches. When the two species occurred sympatrically during spring they exhibited similar habitat selection. Although the habitat used by coho salmon in Lake Ontario tributaries was consistent with observations of habitat use in their native range, higher water velocities were less important to Chinook salmon than has previously been reported.     

Walleye in the Grand River,Ontario: an Overview of Rehabilitation Efforts,Their Effectiveness,and Implications for Eastern Lake Erie Fisheries

Walleye (Sander vitreus) from the Grand River (Ontario) are recognized as genetically and physiologically distinct from other Lake Erie stocks. The low abundance of these walleye in the early 1980s triggered rehabilitation efforts that included intensive research, transfers of walleye from the Thames River (Ontario), supplemental stocking from local hatcheries, construction of a fishway, and creation of additional spawning habitat. Walleye migrating from Lake Erie are currently hindered from reaching 90% of potential riverine spawning habitat by a dam 7 km upstream. Although increased walleye catch rates were reported following construction of a fishway in 1995, recent assessment has shown that access is still severely restrained. Catch rates of young-of-the-year walleye during fall surveys have increased notably since 1999, coincident with direct transfers of mature adults over the barrier. Recent successful year classes have contributed to a population dominated by young (< 5 y) fish. Genetic analyses show that fish culture contributed between 3% and 25% to five recent year classes of Grand River walleye. Facilitating access to spawning habitat above the Dunnville dam may be the most effective way to increase the productivity of this stock, with consequent strengthening of walleye fisheries and the fish community in the eastern basin of Lake Erie.     

Development of a submerged aquatic vegetation community index of biotic integrity for use in Lake Ontario coastal wetlands

Submerged aquatic vegetation (SAV) supports biodiversity in the Great Lakes basin by providing an important source of food and habitat for breeding marsh birds and fish and it is desirable to have indices enabling reporting on the condition of SAV, to complement already available indices for the condition of fish, aquatic macroinvertebrate, and bird communities and water quality. We developed a SAV index of biotic integrity (SAV IBI) with 6 years of quadrat-based vegetation species composition data (2003, 2005–2009) collected across 46 coastal wetlands on the Canadian side of Lake Ontario. We evaluated the suitability of thirteen potential metrics that described species richness, floristic quality, and cover. Metrics with a significant linear or non-linear response to disturbance (as assessed by a water quality index; WQI) were retained for use in the SAV IBI. Retained metrics included turbidity-intolerant species richness, native species richness, coefficient of conservatism, and total cumulative coverage. Lower SAV IBI scores indicated poorer coastal wetland conditions. Coastal wetlands in poor condition were located in more urbanized watersheds (e.g., Durham Region) relative to wetlands in more natural watersheds. Fish and breeding bird community condition showed strong significant relationships with the SAV IBI, suggesting that SAV was an important component of fish and bird biodiversity. Our SAV assessment index and its relationship to faunal diversity can be used to inform conservation decisions.     

Comparison of a Habitat Productivity Index (HPI) and an Index of Biotic Integrity (IBI) for Measuring the Productive Capacity of Fish Habitat in Nearshore Areas of the Great Lakes

A Habitat Productivity Index (HPI) and an Index of Biotic Integrity (IBI) were compared as measures of habitat productive capacity for fish assemblages in nearshore areas of Lake Erie and Lake Ontario. Forty-three species of fishes were captured by boat electrofishing at three areas with contrasting habitats—coastal wetlands, harbor breakwalls, and exposed shorelines. HPI and IBI were correlated among samples as expected, but HPI was most closely correlated with fish community biomass, whereas IBI was correlated with fish species richness. The HPI and IBI indices differed significantly among samples from the three habitat areas in both lakes, reflecting the differences in the abundance and composition of fish catches. The ranking of habitat productive capacity depended on the index: species richness and IBI were highest at the coastal wetlands, and biomass and HPI were highest at the harbors. Results support the contention that to effectively determine habitat productive capacity, both the production and diversity characteristics of the fish community need to be evaluated.     

Patterns in spatial use of land-locked Atlantic salmon (Salmo salar) in a large lake

Understanding the spatial use of reintroduced fish is useful for fisheries management and evaluating restoration success. Atlantic salmon (Salmo salar) were reintroduced into Lake Ontario in the 1990s; however, the movement ecology of these land-locked fish is unknown. Using acoustic telemetry and Floy tag mark-recaptures, we examined seasonal home range and space use of Atlantic salmon in Lake Ontario. Hatchery-raised adult Atlantic salmon were tagged with acoustic transmitters (n = 14; 8 with depth sensors) or Floy tags (n = 1915) and released. Both acoustic telemetry and Floy tag recaptures (n = 90) indicated cross lake movements, and home ranges encompassed nearly the entire lake in summer but was smaller in winter. Movements were nearshore (<2 km from shore) from spring to summer at ～20 m bathymetric depths, with movements closer to shore in the fall, and further offshore (～5.5 km from shore and 45 m bathymetric depths) in winter. Depth use was relatively shallow (<4 m) with occasional deeper dives (max = 28.5 m), and small diel vertical movements (1–5 m), moving deeper during daytime, consistent with ocean movements of Atlantic salmon. There appears to be spatial segregation among Atlantic salmon and other Lake Ontario salmonids, however, overlap likely occurs in nearshore waters during the spring. Wide-ranging movements of Atlantic salmon in binational (Canada/USA) waters reflects the importance of government agencies collaborating to ensure sustainable fisheries and the coordination of species restoration activities. This is the first study to provide detailed spatial use of Lake Ontario Atlantic salmon to assist in the management of this reintroduced species.     

Is Trypanoplasma Salmositica Present in Lake Ontario Salmonids?

During the period June-October 1981, fish, including lake trout (Salvelinus namaycush), brown trout (Salmo trutta), rainbow trout (Salmo gairdneri) and coho salmon (Oncorhynchus kisutch), were collected from four locations on Lake Ontario. In addition, juvenile coho salmon reared from Lake Ontario fish eggs and maintained in a hatchery were collected. Subsequently, air-dried blood smears were stained with Leishman-Giesma and examined under oil emersion for Trypanoplasma salmositica. In this study of 131 fish, no T. salmositica were found. From these findings it may be assumed that T. salmositica are either rare or not present in Lake Ontario salmonids.     

Developing habitat associations for fishes in Lake Winnipeg by linking large scale bathymetric and substrate data with fish telemetry detections

Understanding relationships between freshwater fishes and habitat is critical for effective fisheries and habitat management. Habitat suitability indices (HSI) are commonly used to describe fish–habitat associations in rivers and other freshwater ecosystems. When applied to large lakes however, standard sampling procedures are inadequate because of larger sampling areas and an increased risk of fish collection bias through one-time observations. Here, we use lake bathymetry, substrate, and multiple fish telemetry detections collected from a systematically deployed receiver grid to develop HSI for four fish species (lake sturgeon, freshwater drum, common carp, and walleye) in Lake Winnipeg. Seasonal variations in habitat use based on water depth and substrate were observed in three of four species. Lake sturgeon remained in shallow locations with predominantly gravel substrate near the mouth of the Winnipeg River regardless of season. Freshwater drum persisted over fine substrate in both summer and winter but had a broader depth range in the summer compared to winter. Common carp shifted from mid-range depths and silt substrate in the summer to shallow depths and gravel substrate in the winter. Walleye showed an unchanging association to fine substrate but expanded from primarily mid-range depths in the summer to include shallower depths in the winter. These findings show how multiple telemetry detections per fish can be combined with hydroacoustic data to provide informative habitat associations for fishes in a large lacustrine ecosystem.     

Morphometric differentiation and gene flow in emerald shiners (Notropis atherinoides) from the lower Great Lakes and the Niagara River

Differences in habitat (e.g., water velocity, prey, and predator regimes) are a driving force causing adaptive divergence among fish populations. This study used geometric shape analysis to assess morphological differences among emerald shiner (Notropis atherinoides) populations inhabiting the Niagara River, Lake Erie, and Lake Ontario. It was expected that emerald shiners inhabiting the two lakes would have more robust bodies and smaller heads, while river emerald shiners were expected to display more fusiform bodies with larger heads. The results of this study indicate that emerald shiners from Lake Erie and the Niagara River had a more robust form on average than individuals from Lake Ontario. Specifically, emerald shiners collected from Lake Ontario displayed more streamlined bodies and larger heads than emerald shiners collected from Lake Erie and the Niagara River. In addition, this divergence in body shape has apparently occurred despite the lack of distinct genetic differentiation as measured with microsatellite variation. Our results suggest that differences in water velocity alone may not be responsible for phenotypic variation in body shape among these emerald shiner populations, and other factors such as differences in prey or predator regimes are likely involved.     

Fish Community Support in Wetlands within Protected Embayments of Lake Ontario

Fish community data were collected to investigate the role of wetlands in supporting fish communities of protected embayments in Lake Ontario. Wetland and deeper, more open, littoral sites were sampled in five protected embayments using gill nets, fyke nets, minnow traps, and electrofishing gear during the summers of 2001 and 2002. Pooled gear data were used to analyze community composition, size frequency, and species richness. We found that even within protected embayments where community composition of both habitats is similar, wetlands support a community of fish different in species dominance and size structure than littoral embayment habitats. The abundance of young-of-year fish suggests that wetlands support fish populations by providing important nursery habitat. The similarity in fish community composition between wetland and littoral habitats indicates that wetlands remain important in supporting a subset of the embayment fish community. These results demonstrate that both wetlands and littoral areas in embayments are valuable and intensively utilized fish habitats that should receive special consideration in ecosystem management plans for the Great Lakes.     

Incorporation of non-native species in the diets of cisco (Coregonus artedi) from eastern Lake Ontario

Cisco Coregonus artedi was once an important native fish in Lake Ontario; however, after multiple population crashes, the cisco stock has yet to recover to historic abundances. Rehabilitation of cisco in Lake Ontario is a fish community management objective, but the extent to which recent non-native species and pelagic food web changes have influenced cisco is not well understood. We described cisco diets in contemporary Lake Ontario following the addition and spread of non-native zooplankton species. We collected 618 cisco and processed 178 for full diet analysis in eastern Lake Ontario using mid-water trawls and bottom-set gill nets from 2016 to 2020. We found that Lake Ontario cisco were mostly zooplanktivorous, and non-native zooplankton dominated their diet during July and September. Cisco smaller than 300 mm had a more diverse diet including both native and non-native zooplankton, while cisco larger than 300 mm fed almost exclusively on non-native predatory cladocerans Bythotrephes longimanus and Cercopagis pengoi (98.9% consumed prey dry mass). We also found fish eggs, presumed to be of coregonine origin in 75% of non-empty December-collected cisco diets, suggesting eggs subsidize cisco diets when available. Juvenile round goby Neogobius melanostomus, alewife Alosa pseudoharengus and rainbow smelt Osmerus mordax were found in 2% of all analyzed non-empty stomachs. Lake Ontario cisco diet appears to be more similar to zooplanktivorous Lake Superior cisco than Lake Michigan where piscivory is prevalent. Lake Ontario cisco diets reflected zooplankton community changes indicating that non-native predatory cladocerans are now an important energy source supporting this native species.     

Results of the collaborative Lake Ontario bloater restoration stocking and assessment, 2012–2020

Bloater, Coregonus hoyi, are deepwater planktivores native to the Laurentian Great Lakes and Lake Nipigon. Interpretations of commercial fishery time series suggest they were common in Lake Ontario through the early 1900s but by the 1950s were no longer captured by commercial fishers. Annual bottom trawl surveys that began in 1978 and sampled extensively across putative bloater habitat only yielded one individual (1983), suggesting that the species had been locally extirpated. In 2012, a multiagency restoration program stocked bloater into Lake Ontario from gametes collected in Lake Michigan. From 2012 to 2020, 1,028,191 bloater were stocked into Lake Ontario. Bottom trawl surveys first detected stocked fish in 2015, and through 2020 ten bloater have been caught (total length mean = 129 mm, s.d. = 44 mm, range: 96–240 mm). Hatchery applied marks and genetic analyses confirmed the species identification and identified stocking location for some individuals. Trawl capture locations and acoustic telemetry suggested that stocked fish dispersed throughout the main lake within months or sooner, and the depth distribution of recaptured bloater was similar to historic distributions in Lake Ontario and other Great Lakes. Predicted bloater trawl catches, based on modeled population abundance and trawl survey efficiency, were similar to observed catches, suggesting that post-stocking survival is less than 20% and contemporary bottom trawl surveys can quantify bloater abundance at low densities and track restoration.     

Majority of age-3 Chinook salmon (Oncorhynchus tshawytscha) in Lake Ontario were wild from 1992 to 2005, based on scale pattern analysis

Stocking of hatchery-raised Chinook salmon has been the principal tool utilized by fishery managers for controlling alewives in Lake Ontario and elsewhere in the Great Lakes. Stocked Chinook salmon are also often viewed by anglers as the principal source of maintaining catch rates. Stocking levels are often controversial and set with limited information about the relative contribution of wild fish to lake-wide populations. Recent research documenting large numbers of age-0 fish in tributaries suggested that wild reproduction was increasing and greater than previously thought. Estimating the contribution of wild Chinook salmon is imperative for successful management of this economically important recreational fishery. To differentiate wild from hatchery-derived Chinook salmon, we developed and validated a classification rule from scale pattern analysis of known-origin fish that was based on the area of the scale focus and the distance between the scale focus and the first circulus. We used this technique to determine the annual proportion of angler-caught, age-3 wild Chinook salmon in Lake Ontario from 1992 to 2005. On average over 14 years, the annual proportion of wild age-3 Chinook salmon was 62% (± 13.6%, 95% CI), but has varied between 24% (± 9.4%) and 82% (± 11.2%). Wild fish have been a high proportion of the Chinook salmon population in Lake Ontario since the late 1980s throughout a period when the lake underwent considerable changes, suggesting that wild and hatchery-origin Chinook salmon are both important components for managing the predator–prey dynamics in Lake Ontario and maintaining angler catch rates.     

Spatiotemporal trends of polychlorinated biphenyls (PCBs) in surface and suspended sediments from the Lake Ontario Canadian nearshore 1994–2018: A fish consumption advisory perspective

Spatiotemporal trends for polychlorinated biphenyls (PCBs) were examined in surface and suspended sediments collected between 1994 and 2018 from over twenty nearshore stations on the Canadian side of Lake Ontario and the St. Lawrence River. In 2018, PCB concentrations ranged over an order-of-magnitude in surface (<10 ng/g?357 ng/g) and suspended sediments (<10 ng/g–330 ng/g), illustrating the presence of legacy hotspots as well as diffuse urban inputs. PCB concentrations in both surface and suspended sediments were consistently highest in Hamilton Harbour, but were also elevated at other stations around the perimeter of the Niagara basin as well as near Trenton and Kingston, Ontario. Generally, higher PCB concentrations were found in surface sediment relative to paired suspended sediment samples suggesting temporal improvements in nearshore sediment quality. However, many stations demonstrated temporal variability in PCB concentrations, a likely factor in the lack of an overall nearshore declining trend. Given that PCBs are listed as a consumption-limiting contaminant for all fish sampling blocks in the Canadian waters of Lake Ontario and are responsible for 78% of restricted advisories, sediment quality benchmarks that account for bioaccumulation potential should be considered over toxicologically-derived guidelines to gauge severity of PCB contamination of nearshore sediments. Relatively higher TOC-normalized PCB concentrations in the western end of Lake Ontario suggests additional research on PCB bioavailability from nearshore sediment would be beneficial in understanding basinwide trends of PCBs in fish, and that an adaptive approach to sediment management may be needed in the context of consumption advisories.     

Predicted Native Fish Response,Potential Rewards and Risks from Flow Alteration in a New Mexico Arid Mountain Stream

Water and natural resource managers are concerned with evaluating how fish habitat and populations may respond to water diversions and small‐scale flow augmentations. We used two‐dimensional hydraulic models, habitat suitability curves and an individual‐based population viability model to assess whether flow augmentations of about 0.28–0.57 m³/s would create suitable habitat for federally listed native fish loach minnow Rhinichthys cobitis and spikedace Meda fulgida in a reach of the Gila River, New Mexico, and then examined how fish population viability may change under a variety of colonization and extinction scenarios. These simulations help to inform water management decisions in a reach of the Gila River where river diversions currently exist and new diversions and augmentations are being proposed. Our results suggest that the flow augmentations evaluated will result in small changes (on average across life stages, ?0.22% to 4.06%) in suitable habitat for loach minnow and spikedace depending on augmentation scenario and fish life stage. While these percent changes are small, they would result in a reduction in the dewatering of the river channel in a river reach where native fish abundance is thought to be low. Actual native fish responses to these habitat changes are unknown; however, these flow augmentations could potentially allow these native species to re‐colonize this river segment from upstream or downstream sources increasing species distribution and likely population viability. Maintaining viable populations of native fish in this river reach is dependent on complex factors including persistence of suitable habitat for multiple life stages, connectivity with other populations and minimizing risk of invasion from non‐native species. We recommend that these predictions from the habitat and population models be tested and verified in an adaptive management framework linking modelling, experimental management, monitoring and reassessment to inform water management decisions in the Gila River. Copyright © 2017 John Wiley & Sons, Ltd.     

Hierarchical multi-scale classification of nearshore aquatic habitats of the Great Lakes: Western Lake Erie

Classification is a valuable conservation tool for examining natural resource status and problems and is being developed for coastal aquatic habitats. We present an objective, multi-scale hydrospatial framework for nearshore areas of the Great Lakes. The hydrospatial framework consists of spatial units at eight hierarchical scales from the North American Continent to the individual 270-m spatial cell. Characterization of spatial units based on fish abundance and diversity provides a fish-guided classification of aquatic areas at each spatial scale and demonstrates how classifications may be generated from that framework. Those classification units then provide information about habitat, as well as biotic conditions, which can be compared, contrasted, and hierarchically related spatially. Examples within several representative coastal or open water zones of the Western Lake Erie pilot area highlight potential application of this classification system to management problems. This classification system can assist natural resource managers with planning and establishing priorities for aquatic habitat protection, developing rehabilitation strategies, or identifying special management actions.     

Microhabitat use of landlocked juvenile Atlantic salmon (Salmo salar)

Large-scale reintroduction programs for landlocked Atlantic salmon Salmo salar are ongoing in Lakes Ontario and Champlain. Commonly, these programs involve stocking hatchery reared juveniles into streams and thus, quantifying the in situ habitat use of stocked fish can help support these efforts. To examine habitat use, we stocked young-of-the-year (YOY) Atlantic salmon into 14 reaches of the Boquet River in the Lake Champlain Basin. The habitat used by YOY Atlantic salmon, measured from microhabitats that were used versus not used, differed between early and late summer for water depth. In early summer, YOY Atlantic salmon used a more narrow range of habitats compared to late summer. However, in both early and late summer, YOY most often used intermediate values in habitat variables except for water velocity in early summer. In early summer, YOY Atlantic salmon had the highest probability of using a water depth of 26 cm, a water velocity of 1 cm/sec, and a pebble substrate. In late summer, the probability of use was highest at a water depth of 61 cm, a water velocity of 11 cm/sec, and a pebble substrate. Our results show that stocked landlocked YOY Atlantic salmon use similar habitats to anadromous populations and may help managers when determining stocking locations or habitat alterations.