Assessment of QuickBird high spatial resolution imagery to detect red attack damage due to mountain pine beetle infestation

High spatial resolution remotely sensed data has the potential to complement existing forest health programs for both strategic planning over large areas, as well as for detailed and precise identification of tree crowns subject to stress and infestation. The area impacted by the current mountain pine beetle (Dendroctonus ponderosae Hopkins) outbreak in British Columbia, Canada, has increased 40-fold over the previous 5 years, with approximately 8.5 million ha of forest infested in 2005. As a result of the spatial extent and intensity of the outbreak, new technologies are being assessed to help detect, map, and monitor the damage caused by the beetle, and to inform mitigation of future beetle outbreaks. In this paper, we evaluate the capacity of high spatial resolution QuickBird multi-spectral imagery to detect mountain pine beetle red attack damage. ANOVA testing of individual spectral bands, as well as the Normalized Difference Vegetation Index (NDVI) and a ratio of red to green reflectance (Red-Green Index or RGI), indicated that the RGI was the most successful (p < 0.001) at separating non-attack crowns from red attack crowns. Based on this result, the RGI was subsequently used to develop a binary classification of red attack and non-attack pixels. The total number of QuickBird pixels classified as having red attack damage within a 50 m buffer of a known forest health survey point were compared to the number of red attack trees recorded at the time of the forest health survey. The relationship between the number of red attack pixels and observed red attack crowns was assessed using independent validation data and was found to be significant (r² = 0.48, p < 0.001, standard error = 2.8 crowns). A comparison of the number of QuickBird pixels classified as red attack, and a broader scale index of mountain pine beetle red attack damage (Enhanced Wetness Difference Index, calculated from a time series of Landsat imagery), was significant (r² = 0.61, p < 0.001, standard error = 1.3 crowns). These results suggest that high spatial resolution imagery, in particular QuickBird satellite imagery, has a valuable role to play in identifying tree crowns with red attack damage. This information could subsequently be used to augment existing detailed forest health surveys, calibrate synoptic estimates of red attack damage generated from overview surveys and/or coarse scale remotely sensed data, and facilitate the generation of value-added information products, such as estimates of timber volume impacts at the forest stand level.     

Detection of foliage conditions and disturbance from multi-angular high spectral resolution remote sensing

Disturbance of forest ecosystems, an important component of the terrestrial carbon cycle, has become a focus of research over recent years, as global warming is about to increase the frequency and severity of natural disturbance events. Remote sensing offers unique opportunities for detection of forest disturbance at multiple scales; however, spatially and temporally continuous mapping of non-stand replacing disturbance remains challenging. First, most high spatial resolution satellite sensors have relatively broad spectral ranges with bandwidths unsuitable for detection of subtle, stress induced, features in canopy reflectance. Second, directional and background reflectance effects, induced by the interactions between the sun-sensor geometry and the observed canopy surface, make up-scaling of empirically derived relationships between changes in spectral reflectance and vegetation conditions difficult. Using an automated tower based spectroradiometer, we analyse the interactions between canopy level reflectance and different stages of disturbance occurring in a mountain pine beetle infested lodgepole pine stand in northern interior British Columbia, Canada, during the 2007 growing season. Directional reflectance effects were modelled using a bidirectional reflectance distribution function (BRDF) acquired from high frequency multi-angular spectral observations. Key wavebands for observing changes in directionally corrected canopy spectra were identified using discriminant analysis and highly significant correlations between canopy reflectance and field measured disturbance levels were found for several broad and narrow waveband vegetation indices (for instance, r²_NDVI = 0.90; r²_CHL3 = 0.85; p < 0.05). Results indicate that multi-angular observations are useful for extraction of disturbance related changes in canopy reflectance, in particular the temporally and spectrally dense data detected changes in chlorophyll content well. This study will help guide and inform future efforts to map forest health conditions at landscape and over increasingly coarse scales.     

Prediction and assessment of bark beetle-induced mortality of lodgepole pine using estimates of stand vigor derived from remotely sensed data

The current outbreak of mountain pine beetle (Dendroctonus ponderosae Hopkins) in British Columbia (BC), Canada, has led forest managers to consider thinning as a means of decreasing residual tree susceptibility to attack and subsequent mortality. Previous research indicates that susceptibility to mountain pine beetle is a function of a tree's physiological vigor and the intensity of attack. Trees able to produce ≥ 80 g (g) of wood per m² of projected leaf area annually are highly resistant, because they are able to shift resource allocation locally from wood to resin production to isolate blue-stain fungi introduced by attacking beetles. Typically, the leaf area of susceptible stands must be reduced by two-thirds to permit most residual trees to increase their vigor to a safe level. We evaluate whether Landsat Thematic Mapper (TM) imagery (30 × 30 m) provides a means to assess the maximum leaf area index (LAI) of unthinned stands and the extent that thinning reduces LAI. The extent that residual trees in thinned stands may have increased their resistance to attack from mountain pine beetle is predicted from a non-linear relationship between % maximum LAI and mean tree vigor.We investigated the merits of this approach in the vicinity of Parson, British Columbia using four stands of lodgepole pine (Pinus contorta Dougl.), two of which were heavily thinned (stands were spaced to 4 and 5 m, approximately 70% reduction in stand density). An analysis of archived Landsat TM imagery indicated that prior to thinning in 1993, all four stands had full canopy, which, for mature stands, would translate to mean tree vigor between 40 and 70 g of annual wood production per m² of foliage. By 1995, based on estimated changes in LAI derived from a second data of Landsat TM imagery, stand vigor in the unthinned stands had not changed; however, in the thinned stands, a nearly two third reduction in LAI resulted in a predicted increase in vigor to between 100 and 160 g wood m^− 2 of leaf area. A subsequent assessment in 2001 indicated that stand vigor remained higher in the thinned stands relative to the control stands. Following an infestation of mountain pine beetle in the study area in 2002, mortality data indicated that the thinned stands experienced no mortality relative to the unthinned stands which experienced 5.5% mortality in the initial years of the attack. In the larger area surrounding the study site, a general relationship was found between predicted stand vigor and mountain pine beetle-induced mortality as estimated from aerial overview survey data (r² = 0.43, p < 0.01).     

Comparison of two types of forest disturbance using multitemporal Landsat TM/ETM+ imagery and field vegetation data

Forest disturbances influence many landscape processes, including changes in microclimate, hydrology, and soil erosion. We analyzed the spectral response and temporal progress of two types of disturbances of spruce forest (bark beetle outbreak and clear-cuts) in the central part of Šumava Mountains at the border between the Czech Republic and Germany, Central Europe. The bark beetle (Ips typographus [L.]) outbreak in this region in the last 20 years resulted in regional-scale spruce forest decay. Clear-cutting was done here to prevent further bark-beetle propagation in the buffer zones.The aim of the study is to identify the differences in spectral response between the two types of forest disturbances and their temporal dynamics. General trends were analyzed throughout the study area, with sampled disturbance areas selected to assess the relationship between field vegetation data and their spectral response. Thirteen Landsat TM/ETM+ scenes from 1985 to 2007 were used for the assessment. The following spectral indices were estimated: NDMI, Tasseled Cap (Brightness, Greenness, Wetness), DI, and DI′. The DI′, Wetness, and Brightness indices show the highest sensitivity to forest disturbance for both disturbance types (clear-cuts and bark beetle outbreak). The multitemporal analysis distinguished three different stages of development. The highest spectral differences between the clear-cuts and the bark beetle disturbances were found in the period between 1996 and 2004 with increased levels of forest disturbance (repeated measures ANOVA, Scheffé post hoc test; p ≤ 0.05). Clear-cut disturbance resulted in significantly higher spectral differences from the original forest and occurred as a more discrete event in comparison to bark beetle outbreak.     

Assessing canopy mortality during a mountain pine beetle outbreak using GeoEye-1 high spatial resolution satellite data

Continuing, severe outbreaks of mountain pine beetle (Dendroctonus ponderosae) across western North America have resulted in widespread mortality of lodgepole pine (Pinus contorta). Multiple studies have used high spatial resolution satellite data to map areas of beetle kill; these studies have largely focused on mapping red canopy cover associated with recent tree mortality and have not examined mapping gray canopy cover that occurs after red needles have dropped. The work presented here examines the use of newly available GeoEye-1 data for mapping both red and gray canopy area in southeastern Wyoming lodgepole pine forest. A 0.5 m spatial resolution, pan-sharpened GeoEye-1 image was used to classify areas of green, red, and gray canopy cover. Reference data were collected at twelve 500 m² field plots. Shadow-normalized green, red, and gray canopy area from classified GeoEye-1 data closely agreed with field-estimated green, red, and gray canopy area. Mean absolute error in canopy cover for the twelve sample plots was 8.3% for the green class, 5.4% for the red class, and 7.2% for the gray class. When all twelve plots were aggregated, remotely sensed estimates of green, red, and gray cover were within 1.7% of the field-estimated cover. Our results demonstrate that high spatial resolution spaceborne multispectral data are a promising tool for mapping canopy mortality caused by mountain pine beetle outbreaks.     

Assessing structural effects on PRI for stress detection in conifer forests

The retrieval of indicators of vegetation stress from remote sensing imagery is an important issue for the accurate assessment of forest decline. The Photochemical Reflectance Index (PRI) has been demonstrated as a physiological index sensitive to the epoxidation state of the xanthophyll cycle pigments and to photosynthetic efficiency, serving as a proxy for short-term changes in photosynthetic activity, stress condition, and pigment absorption, but highly affected by illumination conditions, viewing geometry and canopy structure. In this study, a diurnal airborne campaign was conducted over Pinus sylvestris and Pinus nigra forest areas with the Airborne Hyperspectral Scanner (AHS) to evaluate the effects of canopy structure on PRI when used as an indicator of stress in a conifer forest. The AHS airborne sensor was flown at two times (8:00 GMT and 12:00 GMT) over forest areas under varying field-measured stress levels, acquiring 2 m spatial resolution imagery in 80 spectral bands in the 0.43-12.5 μm spectral range. Five formulations of PRI (based on R₅₃₁ as a xanthophyll-sensitive spectral band) were calculated using different reference wavelengths, such as PRI₅₇₀ (reference band R_REF = R₅₇₀), and the PRI modifications PRI_m1 (R_REF = R₅₁₂), PRI_m2 (R_REF = R₆₀₀), PRI_m3 (R_REF = R₆₇₀), and PRI_m4 (R_REF = R₅₇₀, R₆₇₀), along with other structural indices such as NDVI, SR, OSAVI, MSAVI and MTVI2. In addition, thermal bands were used for the retrieval of the land surface temperature. A radiative transfer modeling method was conducted using the LIBERTY and INFORM models to assess the structural effects on the PRI formulations proposed, studying the sensitivity of PRI_m indices to detect stress levels while minimizing the effects caused by the conifer architecture. The PRI indices were related to stomatal conductance, xanthophyll epoxidation state (EPS) and crown temperature. The modeling analysis showed that the coefficient of variation (CV) for PRI was 50%, whereas the CV for PRIm1 (band R512 as a reference) was only 20%. Simulation and experimental results demonstrated that PRI_m1 (R_REF = R₅₁₂) was less sensitive than PRI (R_REF = R₅₇₀) to changes in Leaf Area Index (LAI) and tree densities. PRI₅₁₂ was demonstrated to be sensitive to EPS at both leaf (r² = 0.59) and canopy level (r² = 0.40), yielding superior performance than PRI₅₇₀ (r² = 0.21) at the canopy level. In addition, PRI₅₁₂ was significantly related to water stress indicators such as stomatal conductance (Gs; r² = 0.45) and water potential (Ψ; r² = 0.48), yielding better results than PRI₅₇₀ (Gs, r² = 0.21; Ψ, r² = 0.21) due to the structural effects found on the PRI₅₇₀ index at the canopy level.     

Predicting temperate conifer forest successional stage distributions with multitemporal Landsat Thematic Mapper imagery

Forest succession is a fundamental ecological process which can impact the functioning of many terrestrial processes, such as water and nutrient cycling and carbon sequestration. Therefore, knowing the distribution of forest successional stages over a landscape facilitates a greater understanding of terrestrial ecosystems. One way of characterizing forest succession over the landscape is to use satellite imagery to map forest successional stages continuously over a region. In this study we use a forest succession model (ZELIG) and a canopy reflectance model (GORT) to produce spectral trajectories of forest succession from young to old-growth stages, and compared the simulated trajectories with those constructed from Landsat Thematic Mapper (TM) imagery to understand the potential of mapping forest successional stages with remote sensing. The simulated successional trajectories captured the major characteristics of observed regional mean succession trajectory with Landsat TM imagery for Tasseled Cap indices based on age information from the Pacific Northwest Forest Inventory and Analysis Integrated Database produced by Pacific Northwest Research Station, USDA Forest Service. Though the successional trajectories are highly nonlinear in the early years of succession, a linear model fits well the regional mean successional trajectories for brightness and greenness due to significant cross-site variations that masked the nonlinearity over a regional scale (R² = 0.8951 for regional mean brightness with age; R² = 0.9348 for regional mean greenness with age). Regression analysis found that Tasseled Cap brightness and greenness are much better predictors of forest successional stages than wetness index based on the data analyzed in this study. The spectral history based on multitemporal Landsat imagery can be used to effectively identify mature and old-growth stands whose ages do not match with remote sensing signals due to change occurred during the time between ground data collection and image acquisition. Multitemporal Landsat imagery also improves prediction of forest successional stages. However, a linear model on a stand basis has a limited predictive power of forest stand successional stages (adjusted R² = 0.5435 using the Tasseled Cap indices from all four images used in this study) due to significant variations in remote sensing signals for stands at the same successional stage. Therefore, accurate prediction of forest successional stage using remote sensing imagery at stand scale requires accounting for site-specific factors influence remotely sensed signals in the future.     

Continuous wavelet analysis for the detection of green attack damage due to mountain pine beetle infestation

Mountain pine beetle (Dendroctonus ponderosae Hopkins) is the most destructive insect infesting mature pine forests in North America and has devastated millions of hectares of forest in western Canada. Past studies have demonstrated the use of multispectral imagery for remote identification and mapping of visible or red attack damage in forests. This study aims to detect pre-visual or green attack damage in lodgepole pine needles by means of hyperspectral measurements, particularly via continuous wavelet analysis. Field measurements of lodgepole pine stands were conducted at two sites located northwest of Edmonton, Alberta, Canada. In June and August of 2007, reflectance spectra (350-2500 nm) were collected for 16 pairs of trees. Each of the 16 tree pairs included one control tree (healthy), and one stressed tree (girdled to simulate the effects of beetle infestation). In addition, during the period of June through October 2008, spectra were collected from 15 pairs of control- and beetle-infested trees. Spectra derived from these 31 tree pairs were subjected to a continuous wavelet transform, generating a scalogram that compiles the wavelet power as a function of wavelength location and scale of decomposition. Linear relationships were then explored between the wavelet scalograms and chemical properties or class labels (control and non-control) of the sample populations in order to isolate the most useful distinguishing spectral features that related to infested or girdled trees vs. control trees.A deficit in water content is observed in infested trees while an additional deficit in chlorophyll content is seen for girdled trees. The measurable water deficit of infested and girdled tree samples was detectable from the wavelet analysis of the reflectance spectra providing a novel method for the detection of green attack. The spectral features distinguishing control and infested trees are predominantly located between 950 and 1390 nm from scales 1 to 8. Of those, five features between 1318 to 1322 nm at scale 7 are consistently found in the July and August 2008 datasets. These features are located at longer wavelengths than those investigated in previous studies (below 1100 nm) and provide new insights into the potential remote detection of green attack. Spectral features that distinguish control and girdled trees were mostly observed between 1550 and 2370 nm from scales 1 to 5. The differing response of girdled and infested trees appears to indicate that the girdling process does not provide a perfect simulation of the effects caused by beetle infestation.It remains to be determined if the location of the 1318-1322 nm features, near the edge of a strong atmospheric water absorption band, will be sufficiently separable for use in airborne detection of green attack. A plot comparing needle water content and wavelet power at 1320 nm reveals considerable overlap between data derived from both infested and control samples, though the groups are statistically separable. This obstacle may preclude a high accuracy separation of healthy and infected single individuals, but establishing threshold identification levels may provide an economical, efficient and expeditious method for discriminating between healthy and infested tree populations.     

Measuring forest structure and biomass in New England forest stands using Echidna ground-based lidar

A ground-based, upward-scanning, near-infrared lidar, the Echidna® validation instrument (EVI), built by CSIRO Australia, retrieves forest stand structural parameters, including mean diameter at breast height (DBH), stem count density (stems/area), basal area, and above-ground woody biomass with very good accuracy in six New England hardwood and conifer forest stands. Comparing forest structural parameters retrieved using EVI data with extensive ground measurements, we found excellent agreement at the site level using five EVI scans (plots) per site (R² = 0.94-0.99); very good agreement at the plot level for stem count density and biomass (R² = 0.90-0.85); and good agreement at the plot level for mean DBH and basal area (R² = 0.48-0.66). The observed variance at site and plot levels suggest that a sample area of at least 1 ha (10⁴ m²) is required to estimate these parameters accurately at the stand level using either lidar-based or conventional methods. The algorithms and procedures used to retrieve these structural parameters are dependent on the unique ability of the Echidna® lidar to digitize the full waveform of the scattered lidar pulse as it returns to the instrument, which allows consistent separation of scattering by trunks and large branches from scattering by leaves. This successful application of ground-based lidar technology opens the door to rapid and accurate measurement of biomass and timber volume in areal sampling scenarios and as a calibration and validation tool for mapping biomass using airborne or spaceborne remotely sensed data.     

Testing the potential of multi-spectral remote sensing for retrospectively estimating fire severity in African Savannahs

The remote sensing of fire severity is a noted goal in studies of forest and grassland wildfires. Experiments were conducted to discover and evaluate potential relationships between the characteristics of African savannah fires and post-fire surface spectral reflectance in the visible to shortwave infrared spectral region. Nine instrumented experimental fires were conducted in semi-arid woodland savannah of Chobe National Park (Botswana), where fire temperature (T_max) and duration (dt) were recorded using thermocouples positioned at different heights and locations. These variables, along with measures of fireline intensity (FLI), integrated temperature with time (T_sum) and biomass (and carbon/nitrogen) volatilised were compared to post-fire surface spectral reflectance. Statistically significant relationships were observed between (i) the fireline intensity and total nitrogen volatilised (r² = 0.54, n = 36, p < 0.001), (ii) integrated temperature (T_sum−μ) and total biomass combusted (r² = 0.72, n = 32, p < 0.001), and (iii) fire duration as measured at the top-of-grass sward thermocouple (dt_T) and total biomass combusted (r² = 0.74, n = 34, p < 0.001) and total nitrogen volatilised (r² = 0.73, n = 34, p < 0.001). The post-fire surface spectral reflectance was found to be related to dt and T_sum via a quadratic relationship that varied with wavelength. The use of visible and shortwave infrared band ratios produced statistically significant linear relationships with fire duration as measured by the top thermocouple (dt_T) (r² = 0.76, n = 34, p < 0.001) and the mean of T_sum (r² = 0.82, n = 34, p < 0.001). The results identify fire duration as a versatile measure that relates directly to the fire severity, and also illustrate the potential of spectrally-based fire severity measures. However, the results also point to difficulties when applying such spectrally-based techniques to Earth Observation satellite imagery, due to the small-scale variability noted on the ground. Results also indicate the potential for surface spectral reflectance to increase following higher severity fires, due to the laying down of high albedo white mineral ash. Most current techniques for mapping burned area rely on the general assumption that surface albedo decreases following a fire, and so if the image spatial resolution was high enough such methods may fail. Determination of the effect of spatial resolution on a sensor's ability to detect white ash was investigated using a validated optical mixture modelling approach. The most appropriate mixing model to use (linear or non-linear) was assessed using laboratory experiments. A linear mixing model was shown most appropriate, with results suggesting that sensors having spatial resolutions significantly higher than those of Landsat ETM+ will be required if patches of white ash are to be used to provide EO-derived information on the spatial variation of fire severity.     

Exploring LiDAR-RaDAR synergy—predicting aboveground biomass in a southwestern ponderosa pine forest using LiDAR, SAR and InSAR

Scanning Light Detecting and Ranging (LiDAR), Synthetic Aperture Radar (SAR) and Interferometric SAR (InSAR) were analyzed to determine (1) which of the three sensor systems most accurately predicted forest biomass, and (2) if LiDAR and SAR/InSAR data sets, jointly considered, produced more accurate, precise results relative to those same data sets considered separately. LiDAR ranging measurements, VHF-SAR cross-sectional returns, and X- and P-band cross-sectional returns and interferometric ranges were regressed with ground-estimated (from dbh) forest biomass in ponderosa pine forests in the southwestern United States. All models were cross-validated. Results indicated that the average canopy height measured by the scanning LiDAR produced the best predictive equation. The simple linear LiDAR equation explained 83% of the biomass variability (n = 52 plots) with a cross-validated root mean square error of 26.0 t/ha. Additional LiDAR metrics were not significant to the model. The GeoSAR P-band (λ = 86 cm) cross-sectional return and the GeoSAR/InSAR canopy height (X-P) captured 30% of the forest biomass variation with an average predictive error of 52.5 t/ha. A second RaDAR-FOPEN collected VHF (λ ∼ 7.8 m) and cross-polarized P-band (λ = 88 cm) cross-sectional returns, none of which proved useful for forest biomass estimation (cross-validated R² = 0.09, RMSE = 63.7 t/ha). Joint consideration of LiDAR and RaDAR measurements produced a statistically significant, albeit small improvement in biomass estimation precision. The cross-validated R² increased from 83% to 84% and the prediction error decreased from 26.0 t/ha to 24.9 t/ha when the GeoSAR X-P interferometric height is considered along with the average LiDAR canopy height. Inclusion of a third LiDAR metric, the 60th decile height, further increased the R² to 85% and decreased the RMSE to 24.1 t/ha. On this 11 km² ponderosa pine study area, LiDAR data proved most useful for predicting forest biomass. RaDAR ranging measurements did not improve the LiDAR estimates.     

Estimation of insect infestation dynamics using a temporal sequence of Landsat data

The current outbreak of mountain pine beetle (Dendroctonus ponderosae) in western Canada has been increasing over the past decade and is currently estimated to be impacting 9.2 million hectares, with varying levels of severity. Large area insect monitoring is typically undertaken using manual aerial overview sketch mapping, whereby an interpreter depicts areas of homogenous insect attack conditions onto 1:250,000 or 1:100,000 scale maps. These surveys provide valuable strategic data for management at the provincial scale. The coarse spatial and attribute resolution of these data however, make them inappropriate for fine-scale monitoring and operational planning. For instance, it is not possible to estimate the initial timing of attack and year of stand death. In this study, we utilise eight Landsat scenes collected over a 14 year period in north-central British Columbia, Canada, where the infestation has gradually developed both spatially and temporally. After pre-processing and normalising the eight scenes using a relative normalisation procedure, decision tree analysis was applied to classify spectral trajectories of the Normalised Difference Moisture Index (NDMI). From the classified temporal sequence of images, key parameters were extracted including the presence of beetle disturbance and timing of stand decline. The accuracy of discriminating beetle attack from healthy forest stands was assessed both spatially and temporally using three years of aerial survey data (1996, 2003, and 2004) with results indicating overall classification accuracies varying between 71 and 86%. As expected, the earliest and least severe attack year (1996), recorded the lowest overall accuracy. The relationship between the timing of stand attack (i.e. moderate to severe beetle infestation) and NDMI (initial year of detected disturbance) was also explored. The results suggest that there is potential for deriving regional estimates of the year of stand death using Landsat data and decision tree analysis however, a higher temporal frequency of images is required to quantify the timing of mountain pine beetle attack.     

Enhancing a leaf radiative transfer model to estimate concentrations and in vivo specific absorption coefficients of total carotenoids and chlorophylls a and b from single-needle reflectance and transmittance

The relative concentrations of different pigments within a leaf have significant physiological and spectral consequences. Photosynthesis, light use efficiency, mass and energy exchange, and stress response are dependent on relationships among an ensemble of pigments. This ensemble also determines the visible characteristics of a leaf, which can be measured remotely and used to quantify leaf biochemistry and structure. But current remote sensing approaches are limited in their ability to resolve individual pigments. This paper focuses on the incorporation of three pigments—chlorophyll a, chlorophyll b, and total carotenoids—into the LIBERTY leaf radiative transfer model to better understand relationships between leaf biochemical, biophysical, and spectral properties.Pinus ponderosa and Pinus jeffreyi needles were collected from three sites in the California Sierra Nevada. Hemispheric single-leaf visible reflectance and transmittance and concentrations of chlorophylls a and b and total carotenoids of fresh needles were measured. These data were input to the enhanced LIBERTY model to estimate optical and biochemical properties of pine needles. The enhanced model successfully estimated reflectance (RMSE = 0.0255, BIAS = 0.00477, RMS%E = 16.7%), had variable success estimating transmittance (RMSE = 0.0442, BIAS = 0.0294, RMS%E = 181%), and generated very good estimates of carotenoid concentrations (RMSE = 2.48 µg/cm², BIAS = 0.143 µg/cm², RMS%E = 20.4%), good estimates of chlorophyll a concentrations (RMSE = 10.7 µg/cm², BIAS = − 0.992 µg/cm², RMS%E = 21.1%), and fair estimates of chlorophyll b concentrations (RMSE = 7.49 µg/cm², BIAS = − 2.12 µg/cm², RMS%E = 43.7%). Overall root mean squared errors of reflectance, transmittance, and pigment concentration estimates were lower for the three-pigment model than for the single-pigment model. The algorithm to estimate three in vivo specific absorption coefficients is robust, although estimated values are distorted by inconsistencies in model biophysics. The capacity to invert the model from single-leaf reflectance and transmittance was added to the model so it could be coupled with vegetation canopy models to estimate canopy biochemistry from remotely sensed data.     

Mapping tree and shrub leaf area indices in an ombrotrophic peatland through multiple endmember spectral unmixing

Leaf area index (LAI) is an important parameter used by most process-oriented ecosystem models. LAI of forest ecosystems has routinely been mapped using spectral vegetation indices (SVI) derived from remote sensing imagery. The application of SVI-based approaches to map LAI in peatlands presents a challenge, mainly due to peatlands characteristic multi-layer canopy comprising shrubs and open, discontinuous tree canopies underlain by a continuous ground cover of different moss species, which reduces the greenness contrast between the canopy and the background.Our goal is to develop a methodology to map tree and shrub LAI in peatlands and similar ecosystems based on multiple endmember spectral mixture analysis (MESMA). This new mapping method is validated using LAI field measurements from a precipitation-fed (ombrotrophic) peatland near Ottawa, Ontario, Canada. We demonstrate first that three commonly applied SVI are not suitable for tree and shrub LAI mapping in ombrotrophic peatlands. Secondly, we demonstrate for a three-endmember model the limitations of traditional linear spectral mixture analysis (SMA) due to the unique and widely varying spectral characteristics of Sphagnum mosses, which are significantly different from vascular plants. Next, by using a geometric-optical radiative transfer model, we determine the nature of the equation describing the empirical relationship between shadow fraction and tree LAI using nonlinear ordinary least square (OLS) regression. We then apply this equation to describe the empirical relationships between shadow and shrub fractions obtained from mixture decomposition with SMA and MESMA, respectively, and tree and shrub LAI, respectively. Less accurate fractions obtained from SMA result in weaker relationships between shadow fraction and tree LAI (R² = 0.61) and shrub fraction and shrub LAI (R² = 0.49) compared to the same relationships based on fractions obtained from MESMA with R² = 0.75 and R² = 0.68, respectively. Cross-validation of tree LAI (R² = 0.74; RMSE = 0.48) and shrub LAI (R² = 0.68; RMSE = 0.42) maps using fractions from MESMA shows the suitability of this approach for mapping tree and shrub LAI in ombrotrophic peatlands. The ability to account for a spectrally varying, unique Sphagnum moss ground cover during mixture decomposition and a two layer canopy is particularly important.     

Possibility investigation of tree diversity mapping using Landsat ETM+ data in the Hyrcanian forests of Iran

Lack of data often limits understanding and management of biodiversity in forested areas. Remote sensing imagery has considerable potential to aid in the monitoring and prediction of biodiversity across many spatial and temporal scales. In this paper, we explored the possibility of defining relationships between species diversity indices and Landsat ETM+ reflectance values for Hyrcanian forests in Golestan province of Iran. We used the COST model for atmospheric correction of the imagery. Linear regression models were implemented to predict measures of biodiversity (species richness and reciprocal of Simpson indices) using various combinations of Landsat spectral data. Species richness was modeled using the band set ETM5, ETM7, DVI, wetness and variances of ETM1, ETM2 and ETM5 (adjusted R² = 0.59, RMSE = 1.51). Reciprocal of Simpson index was modeled using the band set NDVI, brightness, greenness, variances of ETM2, ETM5 and ETM7 (adjusted R² = 0.459 RMSE = 1.15). The results demonstrated that spectral reflectance from Landsat can be used to effectively model tree species diversity. Predictive map derived from the presented methodology can help evaluate spatial aspects and monitor tree species diversity of the studied forest. The methodology also facilitates the evaluation of forest management and conservation strategies in northern Iran.     

Estimating chlorophyll concentration in conifer needles with hyperspectral data: An assessment at the needle and canopy level

This investigation quantitatively links chlorophyll a + b (chl _a + b) concentration, a physiological marker of forest health condition, to hyperspectral observations of Jack Pine (Pinus banksiana), a dominant Boreal forest species. Compact Airborne Spectrographic Imager (CASI) observations, in the visible-near infrared domain, were acquired over eight selected Jack Pine sites, near Sudbury, Ontario, between June and September of 2001. Supplementing the airborne campaigns was concurrent on-site collection of foliage samples for laboratory spectral and chemical measurements. The study first connected needle-level optical properties with pigment concentration through the inversion of radiative transfer models, LIBERTY and PROSPECT. Next, a chlorophyll sensitive optical index (R750/R710), was “scaled-up” using SAILH, a turbid medium canopy model, to estimate total pigment content at the canopy-level. Due to the potential confounding effects of open canopy structure and foliage clumping, the analysis accordingly focused on high spatial resolution CASI imagery (1 m) to visually target tree crowns, while accounting for shadowed areas. Chl _a + b concentration estimation from airborne spectral data using coupled leaf and canopy models was shown to be feasible with a root mean square error of 5.3 μg/cm², for a pigment range of 25.7 to 45.9 μg/cm². Such predictive algorithms using airborne-level data provide the methodology to be potentially scaled-up to satellite-level hyperspectral platforms for large scale monitoring of vegetation productivity and forest stand condition.     

A LiDAR-derived canopy density model for tree stem and crown mapping in Australian forests

The retrieval of tree and forest structural attributes from Light Detection and Ranging (LiDAR) data has focused largely on utilising canopy height models, but these have proved only partially useful for mapping and attributing stems in complex, multi-layered forests. As a complementary approach, this paper presents a new index, termed the Height-Scaled Crown Openness Index (HSCOI), which provides a quantitative measure of the relative penetration of LiDAR pulses into the canopy. The HSCOI was developed from small footprint discrete return LiDAR data acquired over mixed species woodlands and open forests near Injune, Queensland, Australia, and allowed individual trees to be located (including those in the sub-canopy) and attributed with height using relationships (r² = 0.81, RMSE = 1.85 m, n = 115; 4 outliers removed) established with field data. A threshold contour of the HSCOI surface that encompassed ∼ 90% of LiDAR vegetation returns also facilitated mapping of forest areas, delineation of tree crowns and clusters, and estimation of canopy cover. At a stand level, tree density compared well with field measurements (r² = 0.82, RMSE = 133 stems ha^− 1, n = 30), with the most consistent results observed for stem densities ≤ 700 stems ha^− 1. By combining information extracted from both the HSCOI and the canopy height model, predominant stem height (r² = 0.91, RMSE = 0.77 m, n = 30), crown cover (r² = 0.78, RMSE = 9.25%, n = 30), and Foliage & Branch Projective Cover (FBPC; r² = 0.89, RMSE = 5.49%, n = 30) were estimated to levels sufficient for inventory of woodland and open forest structural types. When the approach was applied to forests in north east Victoria, stem density and crown cover were reliably estimated for forests with a structure similar to those observed in Queensland, but less so for forests of greater height and canopy closure.     

Characterizing temperate forest structural and spectral diversity with Hyperion EO-1 data

Forest structural diversity can serve as an important indicator of biodiversity. The relationship between spaceborne hyperspectral remotely sensed data and several measures of forest structure was explored over a 625 km² coastal temperate forest landscape on Vancouver Island, British Columbia, Canada. Thirteen Hyperion bands were selected for analysis based on the documented and hypothesized importance of various spectral wavelengths to forest characterization. To aid in understanding spectral trends, measures of forest stand structural diversity (projected age, projected height, and stand species composition complexity) were derived from forest inventory data. The spectral distance between the stand mean and standard deviation of reflectance and related expectations from global equivalents for each of the 13 bands were used to relate measures of spectral diversity (N = 801 forest inventory stands).Canonical correlation analysis was then used to determine the independent and shared relationships between these selected measures of forest structural diversity (dependent variables) and spectral diversity (independent variables). The dependent variables that were most strongly correlated with the first canonical variate were projected age and projected height, with canonical loadings of 0.973 and 0.979, respectively. In contrast, stand species composition complexity had a weak, negative correlation with spectral diversity (canonical loading = − 0.025). The wavelengths contributing the most to the canonical function included: 681-740 nm, 551-680 nm, and 1401-2400 nm. There have been few studies that attempt to directly link spectral and species diversity in temperate forest environments. From this initial investigation, we posit that the complex spectral response of coastal temperate forests may confound efforts to directly link spectral and species diversity across a range of site conditions.Our results, which are constrained by the spectral and spatial resolution of the data used, our target environment, and the metrics selected for measuring forest structure, suggest that attributes that characterize forest structural conditions may have a more meaningful relationship with spectral diversity than measures of species diversity alone, and that future studies in coastal temperate forests that seek to link spectral diversity with biodiversity should include measures of forest structural diversity, in addition to measures of species diversity.     

Estimating forest canopy height and terrain relief from GLAS waveform metrics

Quantifying aboveground biomass in forest ecosystems is required for carbon stock estimation, aspects of forest management, and further developing a capacity for monitoring carbon stocks over time. Airborne Light Detection And Ranging (LiDAR) systems, of all remote sensing technologies, have been demonstrated to yield the most accurate estimates of aboveground biomass for forested areas over a wide range of biomass values. However, these systems are limited by considerations including large data volumes and high costs. Within the constraints imposed by the nature of the satellite mission, the GeoScience Laser Altimeter System (GLAS) aboard ICESat has provided data conferring information regarding forest vertical structure for large areas at a low end user cost. GLAS data have been demonstrated to accurately estimate forest height and aboveground biomass especially well in topographically smooth areas with homogeneous forested conditions. However in areas with dense forests, high relief, or heterogeneous vegetation cover, GLAS waveforms are more complex and difficult to consistently characterize. We use airborne discrete return LiDAR data to simulate GLAS waveforms and to subsequently deconstruct coregistered GLAS waveforms into vegetation and ground returns. A series of waveform metrics was calculated and compared to topography and vegetation information gleaned from the airborne data. A model to estimate maximum relief directly from waveform metrics was developed with an R² of 0.76 (n = 110), and used for the classification of the maximum relief of the areas sensed by GLAS. Discriminant analysis was also conducted as an alternative classification technique. A model was also developed estimating forest canopy height from waveform metrics for all of the data (R² = 0.81, n = 110) and for the three separate relief classes; maximum relief 0-7 m (R² = 0.83, n = 44), maximum relief 7-15 m (R² = 0.88, n = 41) and maximum relief > 15 m (R² = 0.75, n = 25). The moderate relief class model yielded better predictions of forest height than the low relief class model which is attributed to the increasing variability of waveform metrics with terrain relief. The moderate relief class model also yielded better predictions than the high relief class model because of the mixing of vegetation and terrain signals in waveforms from high relief footprints. This research demonstrates that terrain can be accurately modeled directly from GLAS waveforms enabling the inclusion of terrain relief, on a waveform specific basis, as supplemental model input to improve estimates of canopy height.     

Spectroscopic determination of leaf water content using continuous wavelet analysis

The gravimetric water content (GWC, %), a commonly used measure of leaf water content, describes the ratio of water to dry matter for each individual leaf. To date, the relationship between spectral reflectance and GWC in leaves is poorly understood due to the confounding effects of unpredictably varying water and dry matter ratios on spectral response. Few studies have attempted to estimate GWC from leaf reflectance spectra, particularly for a variety of species. This paper investigates the spectroscopic estimation of leaf GWC using continuous wavelet analysis applied to the reflectance spectra (350-2500 nm) of 265 leaf samples from 47 species observed in tropical forests of Panama. A continuous wavelet transform was performed on each of the reflectance spectra to generate a wavelet power scalogram compiled as a function of wavelength and scale. Linear relationships were built between wavelet power and GWC expressed as a function of dry mass (LWC_D) and fresh mass (LWC_F) in order to identify wavelet features (coefficients) that are most sensitive to changes in GWC. The derived wavelet features were then compared to three established spectral indices used to estimate GWC across a wide range of species.Eight wavelet features observed between 1300 and 2500 nm provided strong correlations with LWC_D, though correlations between spectral indices and leaf GWC were poor. In particular, two features captured amplitude variations in the broad shape of the reflectance spectra and three features captured variations in the shape and depth of dry matter (e.g., protein, lignin, cellulose) absorptions centered near 1730 and 2100 nm. The eight wavelet features used to predict LWC_D and LWC_F were not significantly different; however, predictive models used to determine LWC_D and LWC_F differed. The most accurate estimates of LWC_D and LWC_F obtained from a single wavelet feature showed root mean square errors (RMSEs) of 28.34% (R² = 0.62) and 4.86% (R² = 0.69), respectively. Models using a combination of features resulted in a noticeable improvement predicting LWC_D and LWC_F with RMSEs of 26.04% (R² = 0.71) and 4.34% (R² = 0.75), respectively. These results provide new insights into the role of dry matter absorption features in the shortwave infrared (SWIR) spectral region for the accurate spectral estimation of LWC_D and LWC_F. This emerging spectral analytical approach can be applied to other complex datasets including a broad range of species, and may be adapted to estimate basic leaf biochemical elements such as nitrogen, chlorophyll, cellulose, and lignin.