The Parallel Complexity of Graph Canonization Under Abelian Group Action

We study the problem of computing canonical forms for graphs and hypergraphs under Abelian group action and show tight complexity bounds. Our approach is algebraic. We transform the problem of computing canonical forms for graphs to the problem of computing canonical forms for associated algebraic structures, and we develop parallel algorithms for these associated problems.

1. In our first result we show that the problem of computing canonical labelings for hypergraphs of color class size 2 is logspace Turing equivalent to solving a system of linear equations over the field $\mathbb {F} _{2}$ . This implies a deterministic NC ² algorithm for the problem.
2. Similarly, we show that the problem of canonical labeling graphs and hypergraphs under arbitrary Abelian permutation group action is fairly well characterized by the problem of computing the integer determinant. In particular, this yields deterministic NC ³ and randomized NC ² algorithms for the problem.

     

Para Miner: a generic pattern mining algorithm for multi-core architectures

In this paper, we present Para Miner which is a generic and parallel algorithm for closed pattern mining. Para Miner is built on the principles of pattern enumeration in strongly accessible set systems. Its efficiency is due to a novel dataset reduction technique (that we call EL-reduction), combined with novel technique for performing dataset reduction in a parallel execution on a multi-core architecture. We illustrate Para Miner’s genericity by using this algorithm to solve three different pattern mining problems: the frequent itemset mining problem, the mining frequent connected relational graphs problem and the mining gradual itemsets problem. In this paper, we prove the soundness and the completeness of Para Miner. Furthermore, our experiments show that despite being a generic algorithm, Para Miner can compete with specialized state of the art algorithms designed for the pattern mining problems mentioned above. Besides, for the particular problem of gradual itemset mining, Para Miner outperforms the state of the art algorithm by two orders of magnitude.     

Route-Enabling Graph Orientation Problems

Given an undirected and edge-weighted graph G together with a set of ordered vertex-pairs, called st-pairs, we consider two problems of finding an orientation of all edges in G: min-sum orientation is to minimize the sum of the shortest directed distances between all st-pairs; and min-max orientation is to minimize the maximum shortest directed distance among all st-pairs. Note that these shortest directed paths for st-pairs are not necessarily edge-disjoint. In this paper, we first show that both problems are strongly NP-hard for planar graphs even if all edge-weights are identical, and that both problems can be solved in polynomial time for cycles. We then consider the problems restricted to cacti, which form a graph class that contains trees and cycles but is a subclass of planar graphs. Then, min-sum orientation is solvable in polynomial time, whereas min-max orientation remains NP-hard even for two st-pairs. However, based on LP-relaxation, we present a polynomial-time 2-approximation algorithm for min-max orientation. Finally, we give a fully polynomial-time approximation scheme (FPTAS) for min-max orientation on cacti if the number of st-pairs is a fixed constant.     

Parameterized Domination in Circle Graphs

A circle graph is the intersection graph of a set of chords in a circle. Keil [Discrete Appl. Math., 42(1):51–63, 1993] proved that Dominating Set, Connected Dominating Set, and Total Dominating Set are NP-complete in circle graphs. To the best of our knowledge, nothing was known about the parameterized complexity of these problems in circle graphs. In this paper we prove the following results, which contribute in this direction:

• Dominating Set, Independent Dominating Set, Connected Dominating Set, Total Dominating Set, and Acyclic Dominating Set are W[1]-hard in circle graphs, parameterized by the size of the solution.
• Whereas both Connected Dominating Set and Acyclic Dominating Set are W[1]-hard in circle graphs, it turns out that Connected Acyclic Dominating Set is polynomial-time solvable in circle graphs.
• If T is a given tree, deciding whether a circle graph G has a dominating set inducing a graph isomorphic to T is NP-complete when T is in the input, and FPT when parameterized by t=|V(T)|. We prove that the FPT algorithm runs in subexponential time, namely $2^{\mathcal{O}(t \cdot\frac{\log\log t}{\log t})} \cdot n^{\mathcal{O}(1)}$ , where n=|V(G)|.

     

Detecting Fixed Patterns in Chordal Graphs in Polynomial Time

The Contractibility problem takes as input two graphs G and H, and the task is to decide whether H can be obtained from G by a sequence of edge contractions. The Induced Minor and Induced Topological Minor problems are similar, but the first allows both edge contractions and vertex deletions, whereas the latter allows only vertex deletions and vertex dissolutions. All three problems are NP-complete, even for certain fixed graphs H. We show that these problems can be solved in polynomial time for every fixed H when the input graph G is chordal. Our results can be considered tight, since these problems are known to be W[1]-hard on chordal graphs when parameterized by the size of H. To solve Contractibility and Induced Minor, we define and use a generalization of the classic Disjoint Paths problem, where we require the vertices of each of the k paths to be chosen from a specified set. We prove that this variant is NP-complete even when k=2, but that it is polynomial-time solvable on chordal graphs for every fixed k. Our algorithm for Induced Topological Minor is based on another generalization of Disjoint Paths called Induced Disjoint Paths, where the vertices from different paths may no longer be adjacent. We show that this problem, which is known to be NP-complete when k=2, can be solved in polynomial time on chordal graphs even when k is part of the input. Our results fit into the general framework of graph containment problems, where the aim is to decide whether a graph can be modified into another graph by a sequence of specified graph operations. Allowing combinations of the four well-known operations edge deletion, edge contraction, vertex deletion, and vertex dissolution results in the following ten containment relations: (induced) minor, (induced) topological minor, (induced) subgraph, (induced) spanning subgraph, dissolution, and contraction. Our results, combined with existing results, settle the complexity of each of the ten corresponding containment problems on chordal graphs.     

Improved Algorithms and Complexity Results for Power Domination in Graphs

The NP-complete Power Dominating Set problem is an “electric power networks variant” of the classical domination problem in graphs: Given an undirected graph G=(V,E), find a minimum-size set P?V such that all vertices in V are “observed” by the vertices in P. Herein, a vertex observes itself and all its neighbors, and if an observed vertex has all but one of its neighbors observed, then the remaining neighbor becomes observed as well. We show that Power Dominating Set can be solved by “bounded-treewidth dynamic programs.” For treewidth being upper-bounded by a constant, we achieve a linear-time algorithm. In particular, we present a simplified linear-time algorithm for Power Dominating Set in trees. Moreover, we simplify and extend several NP-completeness results, particularly showing that Power Dominating Set remains NP-complete for planar graphs, for circle graphs, and for split graphs. Specifically, our improved reductions imply that Power Dominating Set parameterized by |P| is W[2]-hard and it cannot be better approximated than Dominating Set.     

Partition Into Triangles on Bounded Degree Graphs

We consider the Partition Into Triangles problem on bounded degree graphs. We show that this problem is polynomial-time solvable on graphs of maximum degree three by giving a linear-time algorithm. We also show that this problem becomes $\mathcal{NP}$ -complete on graphs of maximum degree four. Moreover, we show that there is no subexponential-time algorithm for this problem on graphs of maximum degree four unless the Exponential-Time Hypothesis fails. However, the Partition Into Triangles problem on graphs of maximum degree at most four is in many cases practically solvable as we give an algorithm for this problem that runs in $\mathcal{O}(1.02220^{n})$ time and linear space.     

Exact Algorithms for Finding Longest Cycles in Claw-Free Graphs

The Hamiltonian Cycle problem is the problem of deciding whether an n-vertex graph G has a cycle passing through all vertices of G. This problem is a classic NP-complete problem. Finding an exact algorithm that solves it in ${\mathcal {O}}^{*}(\alpha^{n})$ time for some constant α<2 was a notorious open problem until very recently, when Björklund presented a randomized algorithm that uses ${\mathcal {O}}^{*}(1.657^{n})$ time and polynomial space. The Longest Cycle problem, in which the task is to find a cycle of maximum length, is a natural generalization of the Hamiltonian Cycle problem. For a claw-free graph G, finding a longest cycle is equivalent to finding a closed trail (i.e., a connected even subgraph, possibly consisting of a single vertex) that dominates the largest number of edges of some associated graph H. Using this translation we obtain two deterministic algorithms that solve the Longest Cycle problem, and consequently the Hamiltonian Cycle problem, for claw-free graphs: one algorithm that uses ${\mathcal {O}}^{*}(1.6818^{n})$ time and exponential space, and one algorithm that uses ${\mathcal {O}}^{*}(1.8878^{n})$ time and polynomial space.     

On Cutwidth Parameterized by Vertex Cover

We study the Cutwidth problem, where the input is a graph G, and the objective is find a linear layout of the vertices that minimizes the maximum number of edges intersected by any vertical line inserted between two consecutive vertices. We give an algorithm for Cutwidth with running time O(2 ^k n ^O(1)). Here k is the size of a minimum vertex cover of the input graph G, and n is the number of vertices in G. Our algorithm gives an O(2 ^n/2 n ^O(1)) time algorithm for Cutwidth on bipartite graphs as a corollary. This is the first non-trivial exact exponential time algorithm for Cutwidth on a graph class where the problem remains NP-complete. Additionally, we show that Cutwidth parameterized by the size of the minimum vertex cover of the input graph does not admit a polynomial kernel unless NP?coNP/poly. Our kernelization lower bound contrasts with the recent results of Bodlaender et al. (ICALP, Springer, Berlin, 2011; SWAT, Springer, Berlin, 2012) that both Treewidth and Pathwidth parameterized by vertex cover do admit polynomial kernels.     

Evolutionary Algorithms for Quantum Computers

In this article, we formulate and study quantum analogues of randomized search heuristics, which make use of Grover search (in Proceedings of the 28th Annual ACM Symposium on Theory of Computing, pp. 212–219. ACM, New York, 1996) to accelerate the search for improved offsprings. We then specialize the above formulation to two specific search heuristics: Random Local Search and the (1+1) Evolutionary Algorithm. We call the resulting quantum versions of these search heuristics Quantum Local Search and the (1+1) Quantum Evolutionary Algorithm. We conduct a rigorous runtime analysis of these quantum search heuristics in the computation model of quantum algorithms, which, besides classical computation steps, also permits those unique to quantum computing devices. To this end, we study the six elementary pseudo-Boolean optimization problems OneMax, LeadingOnes, Discrepancy, Needle, Jump, and TinyTrap. It turns out that the advantage of the respective quantum search heuristic over its classical counterpart varies with the problem structure and ranges from no speedup at all for the problem Discrepancy to exponential speedup for the problem TinyTrap. We show that these runtime behaviors are closely linked to the probabilities of performing successful mutations in the classical algorithms.     

Fast Polynomial-Space Algorithms Using Inclusion-Exclusion

Given a graph with n vertices, k terminals and positive integer weights not larger than c, we compute a minimum Steiner Tree in $\mathcal{O}^{\star}(2^{k}c)$ time and $\mathcal{O}^{\star}(c)$ space, where the $\mathcal{O}^{\star}$ notation omits terms bounded by a polynomial in the input-size. We obtain the result by defining a generalization of walks, called branching walks, and combining it with the Inclusion-Exclusion technique. Using this combination we also give $\mathcal{O}^{\star}(2^{n})$ -time polynomial space algorithms for Degree Constrained Spanning Tree, Maximum Internal Spanning Tree and #Spanning Forest with a given number of components. Furthermore, using related techniques, we also present new polynomial space algorithms for computing the Cover Polynomial of a graph, Convex Tree Coloring and counting the number of perfect matchings of a graph.     

A Polynomial Kernel for Feedback Arc Set on Bipartite Tournaments

In the k-Feedback Arc/Vertex Set problem we are given a directed graph D and a positive integer k and the objective is to check whether it is possible to delete at most k arcs/vertices from D to make it acyclic. Dom et al. (J. Discrete Algorithm 8(1):76–86, 2010) initiated a study of the Feedback Arc Set problem on bipartite tournaments (k-FASBT) in the realm of parameterized complexity. They showed that k-FASBT can be solved in time O(3.373 ^k n ⁶) on bipartite tournaments having n vertices. However, until now there was no known polynomial sized problem kernel for k-FASBT. In this paper we obtain a cubic vertex kernel for k-FASBT. This completes the kernelization picture for the Feedback Arc/Vertex Set problem on tournaments and bipartite tournaments, as for all other problems polynomial kernels were known before. We obtain our kernel using a non-trivial application of “independent modules” which could be of independent interest.     

gbase: an efficient analysis platform for large graphs

Graphs appear in numerous applications including cyber security, the Internet, social networks, protein networks, recommendation systems, citation networks, and many more. Graphs with millions or even billions of nodes and edges are common-place. How to store such large graphs efficiently? What are the core operations/queries on those graph? How to answer the graph queries quickly? We propose Gbase, an efficient analysis platform for large graphs. The key novelties lie in (1) our storage and compression scheme for a parallel, distributed settings and (2) the carefully chosen graph operations and their efficient implementations. We designed and implemented an instance of Gbase using Mapreduce/Hadoop. Gbase provides a parallel indexing mechanism for graph operations that both saves storage space, as well as accelerates query responses. We run numerous experiments on real and synthetic graphs, spanning billions of nodes and edges, and we show that our proposed Gbase is indeed fast, scalable, and nimble, with significant savings in space and time.     

NeVer: a tool for artificial neural networks verification

The adoption of Artificial Neural Networks (ANNs) in safety-related applications is often avoided because it is difficult to rule out possible misbehaviors with traditional analytical or probabilistic techniques. In this paper we present NeVer, our tool for checking safety of ANNs. NeVer encodes the problem of verifying safety of ANNs into the problem of satisfying corresponding Boolean combinations of linear arithmetic constraints. We describe the main verification algorithm and the structure of NeVer. We present also empirical results confirming the effectiveness of NeVer on realistic case studies.     

The clock constraint specification language for building timed causality models

The uml Profile for Modeling and Analysis of Real-Time and Embedded (RTE) systems has recently been adopted by the OMG. Its Time Model extends the informal and simplistic Simple Time package proposed by Unified Modeling Language (UML2) and offers a broad range of capabilities required to model RTE systems including discrete/dense and chronometric/logical time. The Marte specification introduces a Time Structure inspired from several time models of the concurrency theory and proposes a new clock constraint specification language (ccsl) to specify, within the context of the uml, logical and chronometric time constraints. A semantic model in ccsl is attached to a (uml) model to give its timed causality semantics. In that sense, ccsl is comparable to the Ptolemy environment, in which directors give the semantics to models according to predefined models of computation and communication. This paper focuses on one historical model of computation of Ptolemy [Synchronous Data Flow (SDF)] and shows how to build SDF graphs by combining uml models and ccsl.     

Inclusion/Exclusion Meets Measure and Conquer

Inclusion/exclusion and measure and conquer are two central techniques from the field of exact exponential-time algorithms that recently received a lot of attention. In this paper, we show that both techniques can be used in a single algorithm. This is done by looking at the principle of inclusion/exclusion as a branching rule. This inclusion/exclusion-based branching rule can be combined in a branch-and-reduce algorithm with traditional branching rules and reduction rules. The resulting algorithms can be analysed using measure and conquer allowing us to obtain good upper bounds on their running times. In this way, we obtain the currently fastest exact exponential-time algorithms for a number of domination problems in graphs. Among these are faster polynomial-space and exponential-space algorithms for #Dominating Set and Minimum Weight Dominating Set (for the case where the set of possible weight sums is polynomially bounded), and a faster polynomial-space algorithm for Domatic Number. This approach is also extended in this paper to the setting where not all requirements in a problem need to be satisfied. This results in faster polynomial-space and exponential-space algorithms for Partial Dominating Set, and faster polynomial-space and exponential-space algorithms for the well-studied parameterised problem k-Set Splitting and its generalisation k-Not-All-Equal Satisfiability.     

Constant Thresholds Can Make Target Set Selection Tractable

Target Set Selection, which is a prominent NP-hard problem occurring in social network analysis and distributed computing, is notoriously hard both in terms of achieving useful polynomial-time approximation as well as fixed-parameter algorithms. Given an undirected graph, the task is to select a minimum number of vertices into a “target set” such that all other vertices will become active in the course of a dynamic process (which may go through several activation rounds). A vertex, equipped with a threshold value t, becomes active once at least t of its neighbors are active; initially, only the target set vertices are active. We contribute further insights into the existence of islands of tractability for Target Set Selection by spotting new parameterizations characterizing some sparse graphs as well as some “cliquish” graphs and developing corresponding fixed-parameter tractability and (parameterized) hardness results. In particular, we demonstrate that upper-bounding the thresholds by a constant may significantly alleviate the search for efficiently solvable, but still meaningful special cases of Target Set Selection.     

An Exact Exponential Time Algorithm for Power Dominating Set

The Power Dominating Set problem is an extension of the well-known domination problem on graphs in a way that we enrich it by a second propagation rule: given a graph G(V,E), a set P?V is a power dominating set if every vertex is observed after the exhaustive application of the following two rules. First, a vertex is observed if v∈P or it has a neighbor in P. Secondly, if an observed vertex has exactly one unobserved neighbor u, then also u will be observed, as well. We show that Power Dominating Set remains $\mathcal{NP}$ -hard on cubic graphs. We design an algorithm solving this problem in time $\mathcal{O}^{*}(1.7548^{n})$ on general graphs, using polynomial space only. To achieve this, we introduce so-called reference search trees that can be seen as a compact representation of usual search trees, providing non-local pointers in order to indicate pruned subtrees.     

Exploiting a hypergraph model for finding Golomb rulers

Golomb rulers are special rulers where for any two marks it holds that the distance between them is unique. They find applications in radio frequency selection, radio astronomy, data encryption, communication networks, and bioinformatics. An important subproblem in constructing “compact” Golomb rulers is Golomb Subruler  (GSR), which asks whether it is possible to make a given ruler Golomb by removing at most \(k\) marks. We initiate a study of GSR from a parameterized complexity perspective. In particular, we consider a natural hypergraph characterization of rulers and investigate the construction and structure of the corresponding hypergraphs. We exploit their properties to derive polynomial-time data reduction rules that reduce a given instance of GSR to an equivalent one with \({{\mathrm{O}}}(k^3)\)  marks. Finally, we complement a recent computational complexity study of GSR by providing a simplified reduction that shows NP-hardness even when all integers are bounded by a polynomial in the input length.     

Fast Algorithms for max independent set

We first propose a method, called “bottom-up method” that, informally, “propagates” improvement of the worst-case complexity for “sparse” instances to “denser” ones and we show an easy though non-trivial application of it to the min set cover problem. We then tackle max independent set. Here, we propagate improvements of worst-case complexity from graphs of average degree?d to graphs of average degree greater than?d. Indeed, using algorithms for max independent set in graphs of average degree 3, we successively solve max independent set in graphs of average degree 4, 5 and?6. Then, we combine the bottom-up technique with measure and conquer techniques to get improved running times for graphs of maximum degree?5 and?6 but also for general graphs. The computation bounds obtained for max independent set are?O ^?(1.1571 ⁿ ), O ^?(1.1895 ⁿ ) and?O ^?(1.2050 ⁿ ), for graphs of maximum (or more generally average) degree?4, 5 and?6 respectively, and?O ^?(1.2114 ⁿ ) for general graphs. These results improve upon the best known results for these cases for polynomial space algorithms.