A fast algorithm for computing sparse visibility graphs

AnO(¦E¦log² n) algorithm is presented to construct the visibility graph for a collection ofn nonintersecting line segments, where ¦E¦ is the number of edges in the visibility graph. This algorithm is much faster than theO(n ²)-time andO(n ²)-space algorithms by Asanoet al., and by Welzl, on sparse visibility graphs. Thus we partially resolve an open problem raised by Welzl. Further, our algorithm uses onlyO(n) working storage.     

An optimal visibility graph algorithm for triangulated simple polygons

LetP be a triangulated simple polygon withn sides. The visibility graph ofP has an edge between every pair of polygon vertices that can be connected by an open segment in the interior ofP. We describe an algorithm that finds the visibility graph ofP inO(m) time, wherem is the number of edges in the visibility graph. Becausem can be as small asO(n), the algorithm improves on the more general visibility algorithms of Asanoet al. [AAGHI] and Welzl [W], which take (n ²) time, and on Suri'sO(m logn) visibility graph algorithm for simple polygons [S].This work was supported in part by a U.S. Army Research Office fellowship under agreement DAAG29-83-G-0020.     

An optimal visibility graph algorithm for triangulated simple polygons

LetP be a triangulated simple polygon withn sides. The visibility graph ofP has an edge between every pair of polygon vertices that can be connected by an open segment in the interior ofP. We describe an algorithm that finds the visibility graph ofP inO(m) time, wherem is the number of edges in the visibility graph. Becausem can be as small asO(n), the algorithm improves on the more general visibility algorithms of Asanoet al. [AAGHI] and Welzl [W], which take Θ(n ²) time, and on Suri'sO(m logn) visibility graph algorithm for simple polygons [S].     

A linear-time algorithm for finding a sparsek-connected spanning subgraph of ak-connected graph

We show that anyk-connected graphG = (V, E) has a sparsek-connected spanning subgraphG = (V, E) with ¦E¦ =O(k¦V¦) by presenting anO(¦E¦)-time algorithm to find one such subgraph, where connectivity stands for either edge-connectivity or node-connectivity. By using this algorithm as preprocessing, the time complexities of some graph problems related to connectivity can be improved. For example, the current best time boundO(max{k ²¦V¦^1/2,k¦V¦}¦E¦) to determine whether node-connectivityK(G) of a graphG = (V, E) is larger than a given integerk or not can be reduced toO(max{k ³¦V¦^3/2,k ²¦V¦²}).The first author was partially supported by the Grant-in-Aid for Encouragement of Young Scientists of the Ministry of Education, Science and Culture of Japan and by the subvention to young scientists by the Research Foundation of Electrotechnology of Chubu.     

A faster approximation algorithm for the Steiner problem in graphs

Summary We present an algorithm for finding a Steiner tree for a connected, undirected distance graph with a specified subset S of the set of vertices V. The set V-S is traditionally denoted as Steiner vertices. The total distance on all edges of this Steiner tree is at most 2(1–1/l) times that of a Steiner minimal tree, where l is the minimum number of leaves in any Steiner minimal tree for the given graph. The algorithm runs in O(¦E¦log¦V¦) time in the worst case, where E is the set of all edges and V the set of all vertices in the graph. It improves dramatically on the best previously known bound of O(¦S¦¦V¦²), unless the graph is very dense and most vertices are Steiner vertices. The essence of our algorithm is to find a generalized minimum spanning tree of a graph in one coherent phase as opposed to the previous multiple steps approach.The work of this author was partially supported by the National Science Foundation under Grants MCS 8342682 and ECS 8340031. This work was performed while this author was a summer visitor at the IBM T.J. Watson Research Center.On leave from: Institut für Angewandte Informatik und Formale Beschreibungsverfahren, Universität Karlsruhe, Postfach 6380, D-7500 Karlsruhe, Federal Republic of Germany     

Solving the Euclidean bottleneck matching problem byk-relative neighborhood graphs

Given a set of pointsV in the plane, the Euclidean bottleneck matching problem is to match each point with some other point such that the longest Euclidean distance between matched points, resulting from this matching, is minimized. To solve this problem, we definek-relative neighborhood graphs, (kRNG) which are derived from Toussaint's relative neighborhood graphs (RNG). Two points are calledk-relative neighbors if and only if there are less thank points ofV which are closer to both of the two points than the two points are to each other. AkRNG is an undirected graph (V,E _r ^k ) whereE _r ^k is the set of pairs of points ofV which arek-relative neighbors. We prove that there exists an optimal solution of the Euclidean bottleneck matching problem which is a subset ofE _r ¹⁷ . We also prove that ¦E _r ^k ¦ < 18kn wheren is the number of points in setV. Our algorithm would construct a 17RNG first. This takesO(n ²) time. We then use Gabow and Tarjan's bottleneck maximum cardinality matching algorithm for general graphs whose time-complexity isO((n logn)^0.5 m), wherem is the number of edges in the graph, to solve the bottleneck maximum cardinality matching problem in the 17RNG. This takesO(n ^1.5 log^0.5 n) time. The total time-complexity of our algorithm for the Euclidean bottleneck matching problem isO(n ² +n ^1.5 log^0.5 n).This research was partially supported by a grant from the National Science Council of the Republic of China under Grant NSC-78-0408-E-007-05.     

Using euler partitions to edge color bipartite multigraphs

An algorithm for finding a minimal edge coloring of a bipartite multigraph is presented. The algorithm usesO(V ^1/2 ElogV + V) time andO(E + V) space. It is based on a divide-and-conquer strategy, using euler partitions to divide the graph. A modification of the algorithm for matching is described. This algorithm finds a maximum matching of a regular bipartite graph with all degrees 2ⁿ, inO(E + V) time andO(E + V) space.This work was partially supported by the National Science Foundation under Grant GJ36461.     

Visibility of disjoint polygons

Consider a collection of disjoint polygons in the plane containing a total ofn edges. We show how to build, inO(n ²) time and space, a data structure from which inO(n) time we can compute the visibility polygon of a given point with respect to the polygon collection. As an application of this structure, the visibility graph of the given polygons can be constructed inO(n ²) time and space. This implies that the shortest path that connects two points in the plane and avoids the polygons in our collection can be computed inO(n ²) time, improving earlierO(n ² logn) results.     

On the efficiency of maximum-flow algorithms on networks with small integer capacities

The performance of maximum-flow algoirthms that work in phases is studied as a function of the maximum arc capacity,C, of the network and a quantity we call thetotal potential, P, of the network, which is related to the average amount of flow that can be sent through a node. Extending results by Even and Tarjan, we derive a tightO(min{C ^1/3¦V¦^2/3,P ^1/2, ¦V¦}) upper bound on the number of phases. AnO(min{P log¦V¦,C¦V¦^3/2, ¦V¦²¦E¦}) upper bound is derived on the total length of the augmenting paths used by Dinic's algorithm. The latter quantity is useful in estimating the performance of Dinic's method on certain inputs. Our results show that on a natural class of networks, the performance of Dinic's algorithm is significantly better than would be apparent from a bound based on ¦V¦ and ¦E¦ alone. We present an application of our bounds to the maximum subgraph density problem.     

On efficient implementation of an approximation algorithm for the Steiner tree problem

Summary This paper studies the design and implementation of an approximation algorithm for the Steiner tree problem. Given any undirected distance graph G and a set of Steiner points S, the algorithm produces a Steiner tree with total weight on its edges no more than 2(1–1/L) times the total weight on the optimal Steiner tree, where L is the number of leaves in the optimal Steiner tree. Our implementation of the algorithm, in the worst case, makes it run in 0(¦E _g¦+¦V _g–S¦log¦V _g–S¦+¦S¦log ¦S¦) time for general graph G and in 0(¦S¦ log¦S¦+M log (M,¦V _g–S¦)) time for sparse graph G, where E _g is the set of edges in G, V_g is the set of vertices in G, M = min {¦E _g, (¦V _g–S¦–1)²/2} and (x,y) = min {i¦log⁽ⁱ⁾ y x/y}.The implementation is not likely to be improved significantly without the improvement of the shortest paths algorithm and the minimum spanning tree algorithm as the algorithm essentially composes of the computation of the multiple sources shortest paths of a graph with ¦V _g¦ vertices and ¦E _g¦ edges and the minimum spanning tree of a graph with ¦V _g–S¦ vertices and M edges.     

Improved edge-coloring with three colors

We show an O(1.344ⁿ)=O(2^0.427n) algorithm for edge-coloring an n-vertex graph using three colors. Our algorithm uses polynomial space. This improves over the previous O(2^n/2) algorithm of Beigel and Eppstein [R. Beigel, D. Eppstein, 3-coloring in time O(1.3289n), J. Algorithms 54 (2) (2005) 168–204.]. We apply a very natural approach of generating inclusion–maximal matchings of the graph. The time complexity of our algorithm is estimated using the “measure and conquer” technique.     

Selection, Routing, and Sorting on the Star Graph

We consider the problems of selection, routing, and sorting on ann-star graph (withn! nodes), an interconnection network which has been proven to possess many special properties. We identify a tree like subgraph (which we call a “(k, 1,k) chain network”) of the star graph which enables us to design efficient algorithms for the above mentioned problems. We present an algorithm that performs a sequence ofnprefix computations inO(n²) time. This algorithm is used as a subroutine in our other algorithms. We also show that sorting can be performed on then-star graph in timeO(n³) and that selection of a set of uniformly distributednkeys can be performed inO(n²) time with high probability. Finally, we also present a deterministic (nonoblivious) routing algorithm that realizes any permutation inO(n³) steps on then-star graph. There exists an algorithm in the literature that can perform a single prefix computation inO(nlgn) time. The best-known previous algorithm for sorting has a run time ofO(n³lgn) and is deterministic. To our knowledge, the problem of selection has not been considered before on the star graph.     

An efficient distributed algorithm for finding all hinge vertices in networks

Let G=(V, E) be a graph with vertex set V of size n and edge set E of size m. A vertex v∈V is called a hinge vertex if there exist two vertices in V\{v} such that their distance becomes longer when v is removed. In this paper, we present a distributed algorithm that finds all hinge vertices on an arbitrary graph. The proposed algorithm works for named static asynchronous networks and achieves O(n ²) time complexity and O(m) message complexity. In particular, the total messages exchanged during the algorithm are at most 2m(log n+nlog n+1) bits.     

Exact Algorithms for <Emphasis Type="Italic">L</Emphasis>(2,1)-Labeling of Graphs

The notion of distance constrained graph labelings, motivated by the Frequency Assignment Problem, reads as follows: A mapping from the vertex set of a graph G=(V,E) into an interval of integers {0,…,k} is an L(2,1)-labeling of G of span k if any two adjacent vertices are mapped onto integers that are at least 2 apart, and every two vertices with a common neighbor are mapped onto distinct integers. It is known that for any fixed k≥4, deciding the existence of such a labeling is an NP-complete problem. We present exact exponential time algorithms that are faster than the naive O ^*((k+1) ⁿ ) algorithm that would try all possible mappings. The improvement is best seen in the first NP-complete case of k=4, where the running time of our algorithm is O(1.3006 ⁿ ). Furthermore we show that dynamic programming can be used to establish an O(3.8730 ⁿ ) algorithm to compute an optimal L(2,1)-labeling.     

Efficient algorithms for constructing (1+∊,β)-spanners in the distributed and streaming models

For an unweighted undirected graph G = (V,E), and a pair of positive integers α ≥ 1, β ≥ 0, a subgraph G′ = (V,H), H ⊂eqE, is called an (α,β)-spanner of G if for every pair of vertices u,v ∊ V, dist_G′(u,v) ≤ α ⋅ dist_G(u,v) + β. It was shown in [21] that for any ∊ > 0, κ = 1,2,…, there exists an integer β = β(∊,κ) such that for every n-vertex graph G there exists a (1+∊,β)-spanner G′ with O(n^1+1/κ) edges. An efficient distributed protocol for constructing (1+∊,β)-spanners was devised in [19]. The running time and the communication complexity of that protocol are O(n^1+ρ) and O(|E|n^ρ), respectively, where ρ is an additional control parameter of the protocol that affects only the additive term β. In this paper we devise a protocol with a drastically improved running time (O(n^ρ) as opposed to O(n^1+ρ)) for constructing (1+∊,β)-spanners. Our protocol has the same communication complexity as the protocol of [19], and it constructs spanners with essentially the same properties as the spanners that are constructed by the protocol of [19]. The protocol can be easily extended to a parallel implementation which runs in O(log n + (|E|⋅ n^ρlog n)/p) time using p processors in the EREW PRAM model. In particular, when the number of processors, p, is at least |E|⋅ n^ρ, the running time of the algorithm is O(log n). We also show that our protocol for constructing (1+∊,β)-spanners can be adapted to the streaming model, and devise a streaming algorithm that uses a constant number of passes and O(n^1+1/κ⋅ {log} n) bits of space for computing all-pairs-almost-shortest-paths of length at most by a multiplicative factor (1+∊) and an additive term of β greater than the shortest paths. Our algorithm processes each edge in time O(n^ρ), for an arbitrarily small ρ > 0. The only previously known algorithm for the problem [23] constructs paths of length κ times greater than the shortest paths, has the same space requirements as our algorithm, but requires O(n^1+1/κ) time for processing each edge of the input graph. However, the algorithm of [23] uses just one pass over the input, as opposed to the constant number of passes in our algorithm. We also show that any streaming algorithm for o(n)-approximate distance computation requires Ω(n) bits of space. This work was Supported by the DoD University Research Initiative (URI) administered by the Office of Naval Research under Grant N00014-01-1-0795. Michael Elkin was supported by ONR grant N00014-01-1-0795. Jian Zhang was supported by ONR grant N00014-01-1-0795 and NSF grants CCR-0105337 and ITR-0331548. Preliminary version of this paper was published in PODC’04, see [22]. After the preliminary version of our paper [22] appeared on PODC’04, Feigenbaum et al. [24] came up with a new streaming algorithm for the problem that is far more efficient than [23] in terms of time-per-edge processing. However, our algorithm is still the only existing streaming algorithm that provides an almost additive approximation of distances.     

New Plain-Exponential Time Classes for Graph Homomorphism

A homomorphism from a graph G to a graph H (in this paper, both simple, undirected graphs) is a mapping f:V(G)→V(H) such that if uv∈E(G) then f(u)f(v)∈E(H). The problem Hom (G,H) of deciding whether there is a homomorphism is NP-complete, and in fact the fastest known algorithm for the general case has a running time of O ^*(n(H) ^cn(G)) (the notation O ^*(⋅) signifies that polynomial factors have been ignored) for a constant 0<c<1. In this paper, we consider restrictions on the graphs G and H such that the problem can be solved in plain-exponential time, i.e. in time O ^*(c ^n(G)+n(H)) for some constant c.     

Piecemeal Graph Exploration by a Mobile Robot

We study how a mobile robot can learn an unknown environment in a piecemeal manner. The robot's goal is to learn a complete map of its environment, while satisfying the constraint that it must return every so often to its starting position (for refueling, say). The environment is modeled as an arbitrary, undirected graph, which is initially unknown to the robot. We assume that the robot can distinguish vertices and edges that it has already explored. We present a surprisingly efficient algorithm for piecemeal learning an unknown undirected graph G=(V, E) in which the robot explores every vertex and edge in the graph by traversing at most O(E+V^1+o(1)) edges. This nearly linear algorithm improves on the best previous algorithm, in which the robot traverses at most O(E+V²) edges. We also give an application of piecemeal learning to the problem of searching a graph for a “treasure.”     

PRAM和LARPBS模型上有向序列翻转距离并行算法

分别在两种重要并行计算模型中给出计算有向基因组排列的反转距离新的并行算法.基于Hannenhalli和Pevzner理论,分3个主要部分设计并行算法:构建断点图、计算断点图中圈数、计算断点图中障碍的数目.在CREW-PRAM模型上,算法使用O(n²)处理器,时间复杂度为O(log²n);在基于流水光总线的可重构线性阵列系统(linear array with a reconfigurable pipelined bus system, LARPBS)模型上,算法使用O(n³)处理器,计算时间复杂度为O(logn).     

Applying Modular Decomposition to Parameterized Cluster Editing Problems

A graph G is said to be a bicluster graph if G is a disjoint union of bicliques (complete bipartite subgraphs), and a cluster graph if G is a disjoint union of cliques (complete subgraphs). In this work, we study the parameterized versions of the NP-hard Bicluster Graph Editing and Cluster Graph Editing problems. The former consists of obtaining a bicluster graph by making the minimum number of modifications in the edge set of an input bipartite graph. When at most k modifications are allowed (Bicluster(k) Graph Editing problem), this problem is FPT, and can be solved in O(4 ^k nm) time by a standard search tree algorithm. We develop an algorithm of time complexity O(4 ^k +n+m), which uses a strategy based on modular decomposition techniques; we slightly generalize the original problem as the input graph is not necessarily bipartite. The algorithm first builds a problem kernel with O(k ²) vertices in O(n+m) time, and then applies a bounded search tree. We also show how this strategy based on modular decomposition leads to a new way of obtaining a problem kernel with O(k ²) vertices for the Cluster(k) Graph Editing problem, in O(n+m) time. This problem consists of obtaining a cluster graph by modifying at most k edges in an input graph. A previous FPT algorithm of time O(1.92 ^k +n ³) for this problem was presented by Gramm et al. (Theory Comput. Syst. 38(4), 373–392, 2005, Algorithmica 39(4), 321–347, 2004). In their solution, a problem kernel with O(k ²) vertices is built in O(n ³) time.     

Efficient Graph-Theoretic Algorithms on a Linear Array with a Reconfigurable Pipelined Bus System

We present efficient algorithms for solving several fundamental graph-theoretic problems on a Linear Array with a Reconfigurable Pipelined Bus System (LARPBS), one of the recently proposed models of computation based on optical buses. Our algorithms include finding connected components, minimum spanning forest, biconnected components, bridges and articulation points for an undirected graph. We compute the connected components and minimum spanning forest of a graph in O(log n) time using O(m+n) processors where m and n are the number of edges and vertices in the graph and m=O(n ²) for a dense graph. Both the processor and time complexities of these two algorithms match the complexities of algorithms on the Arbitrary and Priority CRCW PRAM models which are two of the strongest PRAM models. The algorithms for these two problems published by Li et al. [7] have been considered to be the most efficient on the LARPBS model till now. Their algorithm [7] for these two problems require O(log n) time and O(n ³/log n) processors. Hence, our algorithms have the same time complexity but require less processors. Our algorithms for computing biconnected components, bridges and articulation points of a graph run in O(log n) time on an LARPBS with O(n ²) processors. No previous algorithm was known for these latter problems on the LARPBS.