Distribution of nuisance Cladophora in the lower Great Lakes: Patterns with land use, near shore water quality and dreissenid abundance

Selected shorelines and offshore shoals in Lakes Erie, Huron and Ontario were surveyed with a high frequency hydroacoustic system to investigate current spatial patterns of nuisance benthic filamentous algal (e.g., Cladophora) cover and stand height. Cladophora reached nuisance levels at all sites in Lakes Erie and Ontario, but not in Lake Huron or Georgian Bay. Despite clear gradients in coastal land cover, near shore water quality gradients were generally weak, and for Lakes Erie and Ontario, measures of near shore water quality were similar to that at offshore shoals. Hierarchical partitioning analysis suggested that while dreissenid mussel abundance appeared to be important in determining the magnitude of Cladophora standing crop, the joint contribution of catchment land cover, near shore water quality (nutrient levels and suspended matter) and dreissenid mussel abundance explained nearly 95% of the total variance in nuisance Cladophora standing crop observed in this study. Although the results from this study are necessarily correlative in nature and definition of causal relationships is not possible, these results provide corroborating evidence from sites across a gradient within and across the lower Great Lakes that is consistent with the operation of the near shore shunt model.     

Mussel-derived stimulation of benthic filamentous algae: The importance of nutrients and spatial scale

The reoccurrence of benthic filamentous algal (FA) blooms in the Great Lakes, without associated increases in phosphorus loading, has stimulated renewed interest in determining the causes of Great Lakes benthic algal blooms. We investigated the potential roles of invasive mussels and nutrient limitation with experimental substrata within inner Saginaw Bay. FA abundance on live mussel substrata was typically significantly greater than that on inert (empty shell or rock) substrata. Nutrient addition (from an artificial source) significantly increased FA abundance on inert substrata. These results suggest that: 1) mussel nutrient excretion could be a primary stimulatory mechanism; 2) mussel-mediated stimulation may be even stronger in other, more oligotrophic, Great Lakes nearshore zones; and 3) increased nutrient loading to inner Saginaw Bay may exacerbate existing FA blooms. FA abundance on inert substrata was not affected, even in close proximity to mussels, indicating that the observed stimulatory effect of mussel-derived P on live mussels attenuated at very small spatial scales, on the order of centimeters or less.     

Management of agricultural practices results in declines of filamentous algae in the lake littoral

Filamentous algal cover was quantified during periods of peak biomass from 2001 to 2007 in six littoral macrophyte beds in Conesus Lake, New York (USA). Three of the study sites were adjacent to streams that drained sub-watersheds where extensive agricultural best management practices (BMPs) designed to reduce nutrient runoff were implemented beginning in 2003. Three other study sites were downstream from sub-watersheds where only a few or no BMPs were implemented by landowners. For the sites that received extensive management, comparisons of the Pre-BMP baseline period (2–3 yrs) to the Post-BMP period (4 yrs) revealed that algal cover was statistically lower than baseline in eight of eleven years (72.7%). For the three sites where limited or no management was implemented, the percent cover of filamentous algae was lower than Pre-BMP baseline levels in only three of twelve years (25%). Where major reductions in cover of filamentous algae occurred, positive relationships existed with summer stream loading of nitrate and soluble reactive phosphorus to the nearshore. In some cases only nitrate loading was significantly correlated with percent cover, indicating that the relative importance of nitrogen and phosphorus to algal growth near streams may be determined by the characteristics and land use within each sub-watershed. Agricultural BMPs targeting nutrient and suspended solid runoff can effectively reduce filamentous algal growth locally along the lake littoral zone on a time scale of months to a few years and with moderate commitment of resources. This work offers a new perspective for management of the growing problem of littoral algal growth in the embayments and drowned river mouths of the Great Lakes.     

Factors affecting Cladophora growth in the eastern basin of Lake Erie: Analysis of a monitoring dataset (2012–2019)

Cladophora is a naturally occurring benthic alga in the Great Lakes which can reach nuisance levels in the nearshore, leading to beach closures and other impacts. A monitoring program was initiated in 2012 in the eastern basin of Lake Erie to identify ecological factors driving its growth. Inflows from the Grand River, the largest river to the north shore, were generally positively associated with phosphorus concentrations in the nearshore and negatively associated with light reaching the lakebed. At the depths sampled (3 m–18 m), Cladophora was strongly influenced by light availability, and due to shading by the Grand River plume, an overall negative association was found between Cladophora biomass and phosphorus inputs. Phosphorus limitation was only observed at shallow sites farthest from the Grand River. Positive associations between dreissenid mussel coverage and both Cladophora biomass and tissue phosphorus suggest that nutrient cycling by dreissenids supports Cladophora growth. Our results indicate that i.) the Grand River has a strong influence on nearshore nutrient levels and water clarity; and ii.) Cladophora is limited by both phosphorus and light to varying degrees within the study area, although light appears to be the dominant factor, at least at these depths, years, and locations. The implication that phosphorus reductions could lead to increased Cladophora biomass by improving light conditions will need to be considered carefully against the known historical success of controlling nuisance algae through nutrient management.     

Shifts in Benthic Algal Community Structure and Function Following the Appearance of Zebra Mussels (Dreissena polymorpha) in Saginaw Bay,Lake Huron

Zebra mussel, Dreissena polymorpha (Pallas), proliferation in Saginaw Bay, Lake Huron is associated with increased water clarity and increased light levels on benthic substrata in the littoral zone. We hypothesized that the filtering activities of Dreissena and associated increases in light penetration should affect the structure and function of benthic algae in the bay. Monthly quantitative benthic algal samples were collected from natural substrata by SCUBA in the littoral zone of the bay through the growing seasons of 1991 (initial Dreissena colonization), 1992 and 1993 (post-Dreissena colonization). Algal community structure was examined microscopically and productivity rates were measured using carbon-14 in sealed acrylic chambers in situ. Our data demonstrate that, following Dreissena proliferation, light penetration, benthic algal biomass, chlorophyll concentrations and rates of benthic primary productivity have increased. These changes coincided with a shift from diatom domination of the benthic algal community to a flora dominated by filamentous green algae (Zygnematales). We suggest that these shifts have the potential to affect benthic food webs within littoral zones of the Great Lakes.     

Ecosystem changes and nuisance benthic algae on the southeast shores of Lake Huron

We conducted studies of algal fouling along the southeastern shore of Lake Huron to determine the kinds and spatial distribution of benthic algae, the spatial extent and timing of beach fouling, and the possible influences of biological changes to Lake Huron. There was no change in the physical texture of the substratum, but coverage by algal turf increased from 11% of sites in 1977 to nearly 90% in 2007. Shoreline surveys showed that Chara was most common on flat rocky substrata at depths of 0.15 to 0.20 m. Algae stranded on beaches consisted of 62% periphyton turf, 30% Chara and 8% Cladophora and were not evenly distributed; the largest accumulations were found where shoreline irregularities interrupted longshore flow. Quantities of stranded algae partially reflected the height and duration of waves directed onshore. Macroinvertebrate densities were not correlated with benthic algal abundance in 2010 and were lower with fewer large grazers than in 1980. Densities of Dreissena spp. increased with depth, and small tufts of Cladophora were found on larger individuals. The proliferation of algae in the nearshore zone of central eastern Lake Huron appears to be the result of several recent changes. Phosphorus management and filtering by dreissenid mussels have reduced phytoplankton abundance, improving the light regime. Changes in land use may have increased loadings of phosphorus through shallow groundwater and tributary streams. Dreissenids have also redirected nutrients to the lakebed, further enhancing benthic primary production, and predation by round goby has reduced the numbers of grazing benthic invertebrates.     

Distribution of seston and nutrient concentrations in the eastern basin of Lake Erie pre- and post-dreissenid mussel invasion

Increased human population growth, reduction of phosphorus (P) loading, and the invasion of dreissenid mussels may have changed the spatial pattern and relationships between the nearshore and the offshore seston and nutrient concentrations in the eastern basin of Lake Erie over the past 30 years. We compared seston characteristics, nutrient concentrations, and phytoplankton nutrient status between nearshore and offshore zones in years before (1973–1985) and after (1990–2003) the dreissenid invasion. In 1973 (the only pre-dreissenid year nearshore data was collected), chlorophyll a (chla) and nutrient concentrations were higher nearshore than offshore. In post-dreissenid years, nearshore chla concentrations became significantly lower than the offshore, while carbon (C):chla ratios became higher, which was related to mussel grazing and possibly photoacclimation. Phosphorus deficiency in the phytoplankton increased over the 30-year period, and in the post-dreissenid years was less acute in the nearshore than offshore. Mean water column irradiance became higher in the nearshore relative to the offshore in the post-dreissenid years. The nutrient changes and phytoplankton physiology were consistent with the expected effects of nutrient cycling by mussels and diminished demand by phytoplankton despite increased demand from benthic algae in the nearshore. This basin-scale study suggests that dreissenid mussel invasion can be associated with alterations in the spatial pattern of water column properties in large lakes even on open coasts with vigorous circulation and exchange.     

Cladophora (green algae) and dreissenid mussels over a nutrient loading gradient on the north shore of Lake Ontario

Benthic algae, much of it the green alga Cladophora, blanket the nearshore lakebed of the north shore of Lake Ontario. Nearshore field studies in Toronto, Ajax, Oshawa and Cobourg in 2012 and 2013, and Toronto in 2015 examined the distribution of Cladophora over a nutrient gradient on the north shore of the lake. Concentrations of total phosphorus, dissolved phosphorus and total inorganic nitrogen in the water column decreased from west to east over the gradient corresponding with decreasing watershed development and size. However, high surface cover and nuisance levels of Cladophora biomass were found across the gradient, including the least developed study area where total phosphorus concentrations were similar to those in the open lake. The abundance of Dreissena, high in all areas, was measured concurrently with Cladophora biomass and correlated positively at depths of 6 to 10 m. External loading of phosphorus provides a basis for abatement of Cladophora; however, the influences of enrichment along the shoreline, internal loading at the lakebed and lake trophic status in sustaining growth remain obscure. Nuisance levels of Cladophora are not isolated to locations experiencing elevated external loading and should be viewed in the context of interacting area-specific and lake-wide nutrient supplies.     

Fate of phosphorus from a point source in the Lake Michigan nearshore zone

Nutrient loading into Lake Michigan can produce algal blooms which in turn can lead to hypoxia, beach closures, clogging of water intakes, and reduced water quality. The Great Lakes Water Quality Agreement targets for Lake Michigan are 5600 MT annually for total phosphorus (TP) loading, 7 μg L^?1 lake-wide mean TP concentration, and a chlorophyll-a concentration of 1.8 μg L^?1. However, in light of the recent resurgence of nuisance algal (Cladophora sp.) growth in the nearshore zone, the validity of these targets is now uncertain. The occurrence and abundance of Cladophora in the nearshore area depends primarily on the availability of dissolved phosphorus, light, and temperature. The availability of dissolved phosphorus is a potentially useful indicator of nearshore areas susceptible to excessive Cladophora growth and impaired water quality. Regulating agencies are looking for guidance in determining phosphorus loading rates that minimize local exceedance of the lake target concentration. In this study, the lake assimilative capacity was quantified by applying a biophysical model to estimate the area required for mixing and diluting wastewater treatment plant outfall TP loadings to the level of the lake target concentration during the Cladophora growing season. Model results compared well with empirical measurements of particulate and dissolved phosphorus as well as Cladophora biomass and phosphorus content. The model was applied to test scenarios of wastewater treatment plant phosphorus loading in two different years, in order to help establish phosphorus discharge limits for the plant.     

Great Lakes Cladophora in the 21st century: same algae—different ecosystem

Nuisance growth of the attached, green alga Cladophora was considered to have been abated by phosphorus management programs mandated under the Great Lakes Water Quality Agreement. The apparent resurgence of nuisance growth in Lakes Erie, Michigan and Ontario has been linked conceptually to ecosystem alterations engineered by invasive dreissenid mussels (Dreissena polymorpha and Dreissenabugensis). Here, we apply contemporary modeling tools and historical water quality data sets in quantifying the impact of long-term changes in phosphorus loading and dreissenid-mediated changes in water clarity on the distribution and production of Cladophora. It is concluded that reductions in phosphorus loading in the pre-dreissenid period achieved the desired effect, as model simulations were consistent with the biomass declines reported from the early 1970s to the early 1980s. These declines were, however, largely offset by dreissenid-driven changes in water clarity that extended the depth of colonization by Cladophora, increasing total production. We were not able to isolate and quantify the significance of dreissenid mediation of phosphorus cycling using the historical database. Phosphorus management remains the appropriate mechanism for reducing nuisance levels of Cladophora growth. The development of action plans will require an improved understanding of nearshore phosphorus dynamics such as might be obtained through regular monitoring of soluble reactive phosphorus levels, internal phosphorus content and Cladophora biomass in impacted nearshore regions of the Great Lakes.     

Non-native Dreissena associated with increased native benthic community abundance with greater lake depth

Although the typical interaction between non-native invasive species and native species is considered to be negative, in some cases, non-native species may facilitate native species. Zebra and quagga mussels (Dreissena spp.) are aggressive invaders in freshwater systems, and they can alter energy flow by diverting nutrients from pelagic to benthic food-webs. In the last two decades, quagga mussels have largely replaced zebra mussels in shallow regions of the Laurentian Great Lakes and colonized deeper waters previously devoid of all dreissenids. Here, we aim to characterize potential positive effects of dreissenids in relation to depth on the benthic community in lakes Michigan and Huron. For this study, we used benthic survey data collected from Lake Michigan in 2015 and Lake Huron in 2017 and annual U.S. EPA Great Lakes National Program Office Long-term Biology Monitoring Program data for both lakes from 1998 to 2019. Benthic species richness and abundance (excluding dreissenids) in both lakes were almost three-fold higher in the nearshore (<70 m) compared to offshore (>70 m) communities. We found that, even though abundance of benthic invertebrates decreased with increased depth, total benthos density and biomass were higher in the presence than in the absence of quagga mussels in both lakes. Moreover, increased quagga mussel density and biomass with depth offset the lower benthos density and biomass at deeper depths, and samples with dreissenids had high densities of oligochaetes in both nearshore and offshore communities. These patterns are consistent with facilitative effects of quagga mussels on both shallow and deep-water benthic communities.     

Clearance and Processing of Algal Particles by Zebra Mussels (Dreissena polymorpha)

The exotic zebra mussel, Dreissena polymorpha Pallas, has become a dominant member of nearshore benthic communities in the Laurentian Great Lakes. Suspension-feeding bivalves such as the zebra mussel filter algal particles from the water column and either reject them as pseudofeces, digest them, or egest them asfeces. We used laboratory experiments to compare clearance and particle processing of two green algal species by zebra mussels. The effect of algal concentration on clearance rate of Chlamydomonas reinhardtii varied between large and small mussels. When mussels were fed Pandorina morum, clearance rate declined with increasing algal concentration. Mussel size affected clearance of C. reinhardtii but not P. morum. On a diet of P. morum, pseudofeces production was constant across algal concentrations. When fed C. reinhardtii, mussels increased pseudofeces production as algal concentration increased once a threshold was crossed. Below this threshold, no pseudofeces were produced. Measured clearance rates tended to be as high or higher than those previously reported, indicationg that incipient limiting concentrations vary with the types of particle processed. Absorption efficiencies were similar for both algal species. Our results show that particle processing by zebra mussels depends on the types of particles present in the water column and the size structure of the mussel population. To accurately determine the impacts of zebra mussels on the trophic structure of ecosystems and the cycling of contaminants, investigators must use realistic algal assemblages and account for the size structure of mussel populations.     

Replacement of Zebra Mussels by Quagga Mussels in the Canadian Nearshore of Lake Ontario: the Importance of Substrate,Round Goby Abundance,and Upwelling Frequency

The invasion of the Great Lakes by zebra mussels (Dreissena polymorpha) and quagga mussels (Dreissena bugensis) has been accompanied by tremendous ecological change. In this paper we characterize the extent to which dreissenids dominate the nearshore of the Canadian shoreline of Lake Ontario and examine mussel distribution in relation to environmental factors. We surveyed 27 5-m sites and 25 20-m sites in late August 2003. Quagga mussels dominated all sites (mean: 9,404/m²; range 31–24,270), having almost completely replaced zebra mussels. Round gobies (Neogobius melanostomus) were associated with quagga populations dominated by large mussels. Quagga mussel total mass was low at 5-m sites with high upwelling frequency; we believe this is the first documentation of reduced benthic biomass in areas of upwelling in Lake Ontario. Overall, we estimated 6.32×10¹² quagga mussels weighing 8.13×10¹¹ g dry weight and carpeting ∼66% of the nearshore benthic habitat. Quagga mussels are a dominant and defining feature of the Lake Ontario nearshore, and must be accounted for in management planning.     

Trends in water quality and algal growth in shallow Frisian lakes,The Netherlands

About 20 shallow lakes form, together with interconnected canals, one hydrological water system in the province of Friesland. Total water surface area meets 14,000 ha, of which the lakes cover 10,000 ha. The regional catchment area is about 305,000 ha. In summer periods inflow of water from Lake Ilsselmeer keeps the system on a constant water table of 0.52 m below sea level.At the end of the sixties the lakes became hypertrophic. Algae were dominating the biocenoses and submerged water plants disappeared. Systematic investigations started in 1970, and biological data were included from 1976 on. During twenty years a stable, but highly eutrophic situation, passed. Blue-green algae, especially Oscillatoria agardhii, were dominating the phytoplankton. Submerged vegetation was absent and bream dominated the fish-stock.From 1991 onwards there is a slight improvement in water quality. Transparency increased, phosphorus concentration and algal biomass decreased. Also a shift in phytoplankton species occurred. Dominance of O. agardhii decreased and species diversity increased. First submerged water plants recovered in 1994. Improvements are induced by a combination of measures and a culmination of small effects. Results of 14 years of water quality research are presented. Results are given as trends in time. Attention is paid to the spatial gradient in the province as well. From south to north the chain-arranged lakes represent a remarkable pattern of increasing trophtc state, caused by regional loading of nutrients.     

Long-term trends of Lake Michigan benthos with emphasis on the southern basin

Lake Michigan benthic macrofauna have been studied for almost a century, allowing for a unique analysis of long-term changes in community structure. We examined changes in abundances of three major taxonomic groups of benthic macroinvertebrates (Diporeia, Oligochaeta, and Sphaeriidae) in southern Lake Michigan from 1931 to 2015 and identified the most likely causes for these changes. Abundances of all three groups increased during 1931–1980 with the bulk of these increases occurring in nearshore (≤50 m) waters and coincident with increased loading of phosphorus (P) and subsequent increased primary production. Abundances of all three taxa declined during 1980–2000 again mostly in nearshore waters and coincident with decreased P loading. The quagga mussel (Dreissena rostriformis bugensis) invasion was associated with a further decline in phytoplankton primary production during 2000–2015. Both Diporeia and Sphaeriidae declined in abundance during that time, with Diporeia exhibiting the more pronounced decrease of the two groups. In contrast, Oligochaeta increased in abundance during 2000–2015. The quagga mussel has become, by far, the most abundant benthic macroinvertebrate species in terms of density and biomass. Overall, the primary driver of changes in the abundances of the three major taxa during this 85-year period appeared to be changes in phytoplankton primary production due to changing P loadings and, later in the time series, Dreissena filtering. The dreissenid mussels invasions coincided with a rapid decline of Diporeia abundance, but the mechanism of this negative effect remains unidentified. In contrast, Oligochaeta likely benefited from the quagga mussel invasion, perhaps via quagga-generated food supply.     

A MODEL FOR FIXED ALGAE MANAGEMENT IN OPEN CHANNELS USING FLUSHING FLOWS

The management of regulated rivers and canals involves new objectives of water quality preservation. Among water quality aspects, the development of benthic algae induces impacts on both the quantitative and the qualitative management. In open‐channel networks, their growth causes accumulation of biomass on the substratum, which decreases the hydraulic performance. Their detachment induces increases of drift biomass and particles likely to cause clogging issues. To manage these benthic algae developments, we study an original strategy that consists of performing hydraulic flushes in order to detach a part of the algal cover. The principle is to create a controlled hydrodynamic perturbation thanks to hydraulic control structures and to limit the quantity of fixed and drift algae simultaneously. We propose a comprehensive model of the flushes based on coupled hydrodynamic and algae detachment models in order to analyse and improve the management procedure. This model was applied on two real canals located in southern France. Copyright © 2011 John Wiley & Sons, Ltd.     

Assessing and addressing the re-eutrophication of Lake Erie: Central basin hypoxia

Relieving phosphorus loading is a key management tool for controlling Lake Erie eutrophication. During the 1960s and 1970s, increased phosphorus inputs degraded water quality and reduced central basin hypolimnetic oxygen levels which, in turn, eliminated thermal habitat vital to cold-water organisms and contributed to the extirpation of important benthic macroinvertebrate prey species for fishes. In response to load reductions initiated in 1972, Lake Erie responded quickly with reduced water-column phosphorus concentrations, phytoplankton biomass, and bottom-water hypoxia (dissolved oxygen < 2 mg/l). Since the mid-1990s, cyanobacteria blooms increased and extensive hypoxia and benthic algae returned. We synthesize recent research leading to guidance for addressing this re-eutrophication, with particular emphasis on central basin hypoxia. We document recent trends in key eutrophication-related properties, assess their likely ecological impacts, and develop load response curves to guide revised hypoxia-based loading targets called for in the 2012 Great Lakes Water Quality Agreement. Reducing central basin hypoxic area to levels observed in the early 1990s (ca. 2000 km²) requires cutting total phosphorus loads by 46% from the 2003–2011 average or reducing dissolved reactive phosphorus loads by 78% from the 2005–2011 average. Reductions to these levels are also protective of fish habitat. We provide potential approaches for achieving those new loading targets, and suggest that recent load reduction recommendations focused on western basin cyanobacteria blooms may not be sufficient to reduce central basin hypoxia to 2000 km².     

Nearshore Community Characteristics Related to Shoreline Properties in the Great Lakes

Successful protection and restoration of Great Lakes nearshore ecosystems will likely rely on management of terrestrial resources along Great Lakes shorelines. However, relationships between biological communities and changing shoreline environmental properties are poorly understood. We sought to begin understanding the potential roles of shoreline geomorphological and land cover properties in structuring nearshore biological communities in the Laurentian Great Lakes. Despite high variability in densities (benthic macroinvertebrates and zooplankton) and catch per unit effort (CPUE, shallow water and nearshore fish) within and among lake areas, several biological community patterns emerged to suggest that nearshore aquatic communities respond to shoreline features via the influences of these features on nearshore substrate composition and stability. Benthic macroinvertebrate densities were not different between shoreline types, although they were generally lower at nearshore sites with less stable substrates. Shallow water fish CPUE and zooplankton densities were generally lower for nearshore areas adjacent to developed mid-bluff shorelines and sites characterized by less stable substrates. Larger fish CPUE appeared to be unresponsive to local shoreline and substrate properties of nearshore zones. The emergence of these patterns despite significant ecological differences among lake areas (e.g., productivity, community composition, etc.) suggests that shoreline development may have comparable influences on nearshore ecosystems throughout the Great Lakes, providing a terrestrialbased indicator of relative nearshore biological and ecological integrity.     

Spatial and temporal patterns of macroscopic benthic primary producers in Saginaw Bay,Lake Huron

We investigated spatial and temporal patterns in macroscopic benthic primary producer biomass, production, and composition in inner Saginaw Bay in 2009 and 2010. Charophytes and filamentous algae (FA) were relatively abundant, and vascular macrophytes were less common. The probability of benthic primary producer presence increased with the proportion of benthic substrate composed of rock. Most benthic primary producer biomass occurred at depths of 2–4 m, with very little biomass observed beyond 4 m deep. Charophyte and vascular macrophyte abundances displayed consistent patterns related to distance from the mouth of the Saginaw River. FA abundance also displayed such patterns, but they reversed between 2009 and 2010. Macrophytic benthic primary producer communities were generally dominated by charophytes. Three genera of vascular macrophytes, including Myriophyllum, were also observed. Filamentous algal communities were composed of a mixture of FA taxa. Ten FA genera were observed, including the red alga Compsopogon. Dominance of Compsopogon was related to low water clarity and low TP. Biomass-based benthic production estimates indicated that charophytes and FA strongly dominated macroscopic benthic production; production of vascular macrophytes was relatively low. The observed relationships of abundance and environmental conditions suggested regulation of benthic producer biomass by a shifting mosaic of substratum, nutrient, and light availabilities. The diverse nature of the benthic producer community could complicate understanding and management of excess benthic biomass and beach fouling in Saginaw Bay.     

The aquatic environment of Parry Sound,a deep-water embayment complex of Georgian Bay protected from Dreissena

The coastline of eastern Georgian Bay in the Parry Sound region is a distinctive nearshore environment consisting of a large deep-water embayment partially isolated from the open lake and connected with other embayments of diverse morphometric features. The underlying geology of the embayments and their watersheds contrasts with the larger lake basin, resulting in heterogenous water quality stemming from mixing of the high-alkalinity, low phosphorus waters of Georgian Bay with the low-alkalinity and higher phosphorus waters draining watersheds of the Canadian Shield. In 2016, water quality was examined in the deep basin of Parry Sound known as the Big Sound, and six connected embayments to examine the influences of watershed loading and anthropogenic development to enable better detection of changes related to human activity. Inter-basin mixing and river loading accounted for much of the variability in major ions, water clarity and nutrients except for Deep Bay, an embayment exhibiting signs of nutrient enrichment. The oligotrophic conditions in Parry Sound have changed little since 1990 unlike Lake Huron where the dreissenid invasion has correlated with falling phosphorus levels. Low calcium levels may limit dreissenid mussel numbers in Parry Sound and are hypothesized to have pre-empted mussel-related changes in water quality. Apparent productivity, light regime and water column stratification of the Big Sound and connected embayments contrast with the adjacent nearshore of Georgian Bay indicating an aquatic environment distinct from the exposed nearshore of Georgian Bay.