基于DNA条形码技术对常见石首鱼科鱼胶的物种鉴定

摘　要：目的　运用DNA条形码技术对常见石首鱼鱼胶进行物种鉴定。方法　通过对26份鱼胶样品基因组DNA提取，PCR扩增COI基因、测序，用BOLD物种鉴定系统，与数据库中已有鱼类序列进行比对分析，鉴定出各鱼胶的物种；根据Kimura双参数模型计算样品序列遗传距离，并将所得序列构建NJ和MP系统发育树，进行聚类分析。结果　26份鱼胶样品通过鉴定引物“Fish-F”、“Fish-R”均可实现扩增，条带清晰单一，扩增和测序成功率均为100%；BOLD鉴定结果显示，26份鱼胶样品中23份能够确定物种来源（相似性达98%以上），包括石首鱼科12属15种鱼类，且多数为外来物种，另外3份鱼胶可推测其近缘物种。此外，系统发育树聚类分析结果与物种鉴定结果一致。结论　目前石首鱼类鱼胶来源物种较多，且多为外来基原鱼种。DNA条形码技术与BOLD鉴定系统相结合，可对大部分鱼胶进行准确的物种鉴定。     

DNA条形码技术在深圳鱼肉制品鉴定中的应用

以线粒体细胞色素氧化酶亚基Ⅰ（COⅠ ）基因为目标基因,应用DNA条形码技术鉴别深圳批发市场和超市零售鱼肉制品的种类来源,判别其产品标签是否正确。本研究调查的77 份鱼肉制品均能扩增出特异性条带,28 份样品与产品标签标示不符,“错贴”率高达36.36%,其中所有标示“龙俐鱼”的商品都是低价的“巴丁鱼”（Pangasianodon hypophthalmus）。DNA条形码技术可用于鱼肉制品的来源物种鉴定。     

市场零售水产品（鱼类）真实属性情况分析与监管建议

目的 对市场零售水产品（鱼类）进行物种鉴定,调查分析其真实属性。方法 以COⅠ基因为目标基因,应用DNA条形码技术鉴别深圳零售渠道水产品（鱼类）的品种来源。结果 根据BOLD系统鉴定结果统计,120份深圳地区市场零售水产品（鱼类）样品中,存在以异鳞蛇鲭冒充金枪鱼的现象,部分水产品类别范畴不清晰,虹鳟等钩吻鲑属鱼类是否明确归入“三文鱼”类存在争议。结论 目前深圳市场零售水产品（鱼类）存在鱼种替代或标签不合规现象,建议加强监管、持续规范市场秩序。     

应用DNA条形码技术鉴定烤鱼片、鱼干中河鲀鱼鱼种

应用DNA条形码技术对北京和厦门市市售烤鱼片、鱼干中河鲀鱼成分进行鉴定。方法 以烤鱼片、鱼干中提取基因组DNA为模板,利用针对河鲀鱼细胞色素氧化酶亚基Ⅰ(COⅠ)基因的特异性引物进行PCR扩增,将扩增产物克隆并测定线粒体COⅠ基因序列。将测序结果与GenBank中已有河鲀鱼的DNA序列进行BLAST比对,并且构建分子进化树。结果 本研究27份样品中有15份能扩增出特异性条带。通过BLAST比对和进化树分析,将15份样品归属到不同的河鲀鱼鱼种中。结论 北京和厦门市市售烤鱼片和鱼干中存在混入河鲀鱼的现象,应加强监管和规范产品的加工程序以避免中毒事件发生。     

COI及cytb基因对河鲀鱼鱼种鉴定的适用性研究

目的建立河鲀鱼DNA条形码鉴定方法,探讨细胞色素氧化酶亚基I(COI)及细胞色素b(cytb)基因对我国常见东方鲀属、兔头鲀属河鲀鱼鱼种鉴定的适用性。方法野捕河鲀鱼经形态学鉴定后,钓取COI及cytb基因序列并测序。从Gen Bank下载已有河鲀鱼参考序列,分别构建COI及cytb基因分子进化树,确定样品种属并与形态学鉴定比对。应用所建方法对中毒样品进行河鲀成分鉴定。结果 COI和cytb基因分子进化树将57份样品聚类到东方鲀属和兔头鲀属的9个鱼种,除棕斑兔头鲀和暗鳍兔头鲀(COI进化树)、暗纹东方鲀和晕环东方鲀(cytb进化树)外,2种条形码均能对其余鱼种进行有效区分。中毒样品经鉴定均含有月兔头鲀。结论所建立的DNA条形码方法可有效鉴定河鲀鱼鱼种,弥补形态学鉴定的缺陷。     

鱼胶基原鱼种鉴定技术研究进展

鱼胶作为我国传统滋补药材,近年来其消费市场日益繁荣,鱼胶基原鱼种来源范围不断扩大,尤其是进口基原鱼种占比不断提升,部分市售鱼胶真伪难辨,鱼胶基原鱼种鉴定需求不断增加。本文概述了鱼胶基原鱼种形态学鉴定法、光学分析法和分子生物学鉴定法的发展历程、应用情况,对比了分子生物学方法中不同基因片段、不同引物等的适用性,分析了上述方法的优缺点。传统形态学鉴定具有快速、不需要鉴定人员具备较高实验操作能力的优势,但依赖专家个人经验和观察手段,且对鱼胶残片等形态特征缺失的样品鉴定能力有限;光学分析法无法精确到种属;而以DNA条形码技术为主的分子生物学方法是对某一特定区域的DNA序列排列顺序进行对比分析,鉴定结果准确,但较为耗时。由于鱼胶是动物组织干制品,在物种鉴定方面具有形态信息较少、样品处理时间较长等特点;本文有针对性地综合国内外相关研究,填补了特殊动物组织物种鉴定研究方法综述的空白,为以后进口贸易或市场监管中如何优化鉴定技术提供理论依据。     

DNA条形码技术在肉品防欺诈鉴别中的应用

以DNA条形码技术鉴别进出口监督抽检的鱼肉等水产制品的种类来源,用以判别其与申报或产品标签是否相符.分别提取鱼肉等样品的基因组DNA,以目前国际上比较公认的动物线粒体细胞色素氧化酶COⅠ基因通用引物进行PCR扩增.PCR产物经测序分析后,将得到的扩增片段序列与Genbank数据库进行序列比对,同时提交Barcoding Life DNA条形码数据库(BOLD)进行鉴定分析.本批次监督抽检的16份鱼肉、鱼丸等水产制品中除1份样品未能成功获得鱼肉COⅠPCR扩增外,其余15份样品均顺利得到种类来源鉴定,鉴定结果约有31.25％的样品与产品标签标示不符.作为一种简单、快速、有效的分子鉴定技术,DNA条形码可以直接应用于鱼肉等动物源性食品的种类鉴定.     

基于COI和16S基因序列的鱼胶基原鱼种鉴定

目的 建立基于COI和16S基因序列的DNA条形码鱼胶基原鉴定方法。方法 以汕头、厦门、莆田等地采集的28个鱼胶为研究对象,利用形态特征分类法对28个样品进行观察,再提取基因组DNA,分别利用6对引物扩增COI和16S基因序列并双向测序。PCR产物测序分析后,输入Genbank中进行BLAST搜索进行分析比对,再利用最大似然法(ML)进行系统发育分析。结果 采集的28个鱼胶样品可分为11种类型。主要有萝卜型、“Ｙ”字型、心型、纸片型和琵琶型等。BLAST分析比对共鉴定出26个鱼胶样品,隶属于5目6科9属12种。系统发育分析表明不同种类的鱼胶处于不同分支中。结论 该方法可用于鱼胶基原鱼种的快速分子鉴定,也为鱼胶的真伪鉴别及溯源提供理论依据。     

深圳市售水产品铅镉汞污染状况分析

目的了解深圳市市售水产品中重金属铅、镉、汞含量水平,评价水产品食用的安全性。方法在深圳市区范围内采集具有代表性、典型性的水产品, 26个品种共377份样品,按照GB 5009.268-2016《食品安全国家标准食品中多元素的测定》的方法进行分析。引入单因子污染指数法分析污染状况。结果镉、甲基汞、铅超标率分别为7.43%、1.60%和1.06%。单因子污染指数显示镉汞存在一定程度污染,其中镉重度污染样品主要集中在鱼类(重度污染占比10.2%)和甲壳类(重度污染占比14.7%),对比其他地区近5年污染数据显示深圳市售甲壳类水产品镉污染状况明显高于广东省平均水平。结论深圳市售水产品重金属安全卫生质量较好,但甲壳类水产品镉存在一定程度污染,应引起高度重视。     

DNA条形码技术在鲑科鱼类真伪鉴别中的应用

本研究建立了基于DNA条形码技术的鲑科鱼类特异性检测方法,并用此方法对17种市售鲑科鱼进行物种检测。先从样品中扩增得到DNA细胞色素C氧化酶I(COI)和16S核糖体RNA(16S rRNA)的基因片段,然后进行一代测序,对测序结果进行比对,验证样品的真实属性。结果表明,以COI为靶标、16S r RNA为辅助靶标,可实现对由单一物种组成的鲑鱼制品的物种鉴定。本研究结果证实DNA条形码技术可用于鲑科鱼类的物种鉴别,为鲑科鱼的市场监管提供技术支撑。     

DNA barcoding reveals high substitution rate and mislabeling in croaker fillets (Sciaenidae) marketed in Brazil: The case of “pescada branca” (Cynoscion leiarchus and Plagioscion squamosissimus)

The removal of morphological features during fish processing hinders identification to the species level, increasing the chances of species substitution and the mislabeling of marketed products. We used DNA barcoding to assess whether species substitutions occur in croaker (Sciaenidae) fillets labeled as “pescada branca” sold in the Brazilian Amazon, where two species are known under this vernacular name (Cynoscion leiarchus and Plagioscion squamosissimus). A 577-bp cytochrome C oxidase subunit I (COI) sequence was obtained from 137 fillets and compared with the sequences of whole Sciaenidae fish that were identified based on their morphology and the reference sequences of the BOLD and GenBank public databases. DNA barcoding was able to identify 90% of the samples analyzed to the species level, and the results showed a high rate of species substitution in the fillets labeled as “pescada branca”. The substitution rate was 100% if using the criterion that the fillets should be C. leiarchus and 76.6% if using the criterion that they should be P. squamosissimus. Additionally, the results show that “pescada branca” was replaced in most cases by species of lower commercial value, which clearly demonstrates economic fraud aimed at increased profits. Our data confirm that DNA barcoding is a sensitive and reliable tool that can be applied to authenticate processed fish.     

Marketplace substitution of Atlantic salmon for Pacific salmon in Washington State detected by DNA barcoding

Accurate identification of seafood in the marketplace is an issue of international concern, due to high rates of market substitution of cheaper or more widely available species for expensive or high-demand species. Salmon samples from stores and restaurants throughout western Washington, USA were tested using DNA sequencing of a short section of the mitochondrial cytochrome c oxidase I (COI) gene (DNA barcoding) to identify Atlantic salmon substituted for Pacific salmon. Of 99 salmon samples, 11 (11%) were Atlantic salmon sold as Pacific salmon. More than 38% of restaurant samples were mislabeled to species, while only 7% of store samples were mislabeled. Market substitution rates were significantly greater in restaurants compared to stores, and consistently greater in winter compared to spring, although not significantly. The high market substitution rate in restaurants documents a pressing need for more monitoring and enforcement specifically in restaurants. DNA barcoding is a valuable tool for rapid and definitive authentication of salmon in the marketplace, and should be more widely adopted to discourage market substitution.     

鹿茸物种来源DNA条形码鉴定技术研究

目的 受经济利益驱动,鹿茸标签不符情况时有发生,损害消费者利益的同时,也给产业的发展带来了负面影响,探究鹿茸的鹿种鉴定方法为鹿茸市场监管提供技术支持。方法 本研究以线粒体细胞色素氧化酶I基因（Cytochrome oxidase I gene, COI）和线粒体细胞色素b基因（Cytochrome b gene , Cytb）为靶基因对鹿茸样品进行鉴定,并对两种基因的鉴别能力进行了比较。结果 发现COI存在无法鉴别梅花鹿和马鹿的情况,而Cytb可以将所有鹿茸鉴定至种水平。并将Cytb作为目标片段,建立了鹿茸中物种来源鉴定的DNA条形码方法。并利用该方法对市场上销售的53份鹿茸样品进行标签符合性鉴定。结论 进一步证实了使用Cytb的DNA条形码方法可以有效鉴定出市售鹿茸样品的物种来源。收集到的53份市售鹿茸样品中,仅有21份样品与标签标识物种相符;25份样品存在将低价鹿茸标为高价鹿茸的现象;7份样品缺少明确的物种信息。本研究结果可以为监管部门规范鹿茸产品标签标识提供技术支撑。     

Applicability of DNA barcode for identification of fish species

DNA barcoding is a species identification technique, which uses a very short DNA sequence from a region of approximately 650 base-pairs in the 5'-end of the mitochondrial cytochrome c oxidase subunit I gene as a marker to identify species of mammals and fishes. The applicability of DNA barcoding for identification of fish species consumed in Japan was studied. Among thirty-one fresh or processed fishes were obtained from the market, two samples could not be identified due to lack of data in the Barcode of Life Data (BOLD) database. However, BLAST-search of 16S rRNA genes in the National Center for Biotechnology Information (NCBI) database and the PCR-RFLP method published by the Food and Agricultural Materials Inspection Center (FAMIC) were found to be applicable to identify these 2 fishes. The results show that the DNA barcoding technique is potentially useful as a tool for confirming the proper labeling of fish species in the Japanese market.     

A comparative study of different DNA barcoding markers for the identification of some members of Lamiacaea

The objective of the present work is to evaluate the efficacy of a DNA barcoding approach as a tool for the recognition of commercial kitchen spices belonging to the Lamiaceae family that are usually sold as enhancers of food flavor. A total of 64 spices samples, encompassing six different genera (i.e. Mentha, Ocimum, Origanum, Salvia, Thymus and Rosmarinus) were processed with a classical DNA barcoding approach by amplifying and sequencing four candidate barcode regions (rpoB, rbcL, matK and trnH-psbA) with universal primers. Results suggest that the non-coding trnH-psbA intergenic spacer is the most suitable marker for molecular spices identification followed by matK, with interspecific genetic distance values ranging between about 0% to 7% and 0% to 5%, respectively. Both markers were almost invariably able to distinguish spices species from closest taxa with the exclusion of samples belonging to the genus Oregano. Moreover, in a context of food traceability the two markers are useful to identify commercial processed spice species (sold as dried plant material). We also evaluated the potential benefits of a multilocus barcode approach over a single-marker and although the most suitable combination was the matK + trhH-psbA, the observed genetic distances values were very similar to the discriminatory performance of the trnH-psbA. Finally, this preliminary work provide clear evidences that the efficacy of a DNA barcoding approach to the recognition of commercial spices is biased by the occurrence of taxonomic criticisms as well as traces of hybridization events within the family Lamiaceae. For this reason, to better define a more practical and standardized DNA barcoding tool for spices traceability, the building of a dedicated aromatic plants database in which all species and cultivars are described (both morphologically and molecularly) is strongly required.     

DNA条形码技术在石斛分类鉴定中的应用进展

由于石斛属植物种间、种内形态相似,地域分布范围广泛、杂交种众多,市场上混乱,现亟需一种简单、高效的鉴定方法对其进行准确地鉴定。DNA条形码技术利用标准的一个或多个DNA片段对物种进行鉴定,是近年来生物学研究的热点领域,也是生物学发展最迅速的方向之一。DNA条形码技术可以从分子水平弥补传统鉴定方法的一些不足。该技术具有良好的通用性,使得物种鉴定过程更加快速,已经广泛应用于石斛的鉴定研究中。本文综述了DNA条形码技术及其原理,同时讨论了基于核基因片段(ITS、ITS2)以及叶绿体基因片段(matK、rbcL、psbA-trnH)在石斛分类鉴定中的应用,以期为加大石斛分类鉴定的力度和精度,以及为DNA条形码技术在石斛分类鉴定领域拓展和应用提供一定的理论指导依据。     

线粒体细胞色素b基因在鱼唇制品物种鉴定中适用性的研究

目的 探讨线粒体细胞色素b基因(cytochrome b, Cyt b)作为DNA条形码在鱼唇制品物种鉴定中的适用性。方法 对全国31个城市购买的252份鱼唇样品进行聚合酶链式反应(polymerase chain reaction, PCR)测序,同源基因比较分析,构建系统发育树,鉴定制作鱼唇产品的鱼种,并对其进行濒危评价分析。结果 成功鉴定250个样品,一致性物种基因序列相似性在99%以上,涉及8个鲨鱼物种,最多样品为大青鲨(Prionace glauca),占样品65.5%,其余还有镰形真鲨(Carcharhinus falciformis)、路氏双髻鲨(Sphyrna lewini)、锤头双髻鲨(Sphyrna zygaena)等7类鲨鱼物种。结论 Cyt b可以作为对鲨鱼物种进行鉴定的一种DNA条形码,在对鲨鱼种鉴定时可以使用Cyt b基因及细胞色素氧化酶亚基I基因联合鉴定条形码,为深加工海产品物种鉴定提供更多的技术支撑。