Modeling salt-dependent proton binding by organic soils with the NICA-Donnan and Stockholm humic models

Models are available for simulations of proton dissociation and cation binding by natural organic matter; two examples are the NICA-Donnan and Stockholm Humic (SHM) models. To model proton and metal binding, it is necessary to properly account for the ionic strength dependence of proton dissociation. In previous applications of the models for soils itwas assumed that the electrostatic interactions for solid-phase humic substances were the same as in solution; this assumption was recently challenged. Therefore, we reanalyzed previously published acid-base titrations of acid-washed Sphagnum peat, and we produced additional data sets for two Sphagnum peats and two Spodosol Oe horizons. For the soil suspensions, the original NICA-Donnan and SHM models, which were developed for dissolved humic substances, underestimated the observed salt dependence considerably. When a fixed Donnan volume of 1 L kg(-1) for humic substances in the solid phase was used, the NICA-Donnan model fits were much improved. Also for SHM, slight changes produced improved model fits. The models also produced acceptable simulations of the dissolved Ca, Mg, and Cd concentrations, provided that cation selectivitywas introduced. In conclusion, the proposed extensions to the NICA-Donnan and SHM models were shown to predict the salt dependence of solid-phase humic substances more satisfactorily than earlier model versions.     

Molecular and quantitative analysis of metal ion binding to humic acids from sewage sludge and sludge-amended soils by fluorescence spectroscopy

Humic acids (HAs) isolated from sewage sludge (SS) and control and SS-amended soils were characterized by fluorescence spectroscopy. The main feature of fluorescence spectra was a broad band with the maximum centered at excitation/emission wavelengths that were much shorter for SS-HA (340/438 nm) than for any soil HA (440/510 nm). Titration with Cu(II), Zn(II), Cd(II), and Pb(II) ions decreased fluorescence intensities of HAs. Titration data were fitted to a single-site fluorescence quenching model, and metal ion complexing capacities of each HA sample and stability constants of metal ion-HA complexes were calculated. The binding capacities of HAs and strengths of metal ion-HA complexes followed the order Pb(II) > Cu(II) > Cd(II) > Zn(II). With respect to the control soil HA, SS-HA, which showed the smallest contents of acidic functional groups and the lowest humification degree, was characterized by much smaller binding capacities and stability constants. The binding capacities and affinities of SS-amended soil HA were intermediate between those of native soil HA and SS-HA but closer to the former, thus suggesting a partial incorporation of HA fractions of SS into native soil HAs. These effects are expected to have a great impact on the behavior of metals in SS-amended soils.     

Studies of the compositions of humic acids from Amazonian Dark Earth soils

The compositions of humic acids (HAs) isolated from cultivated and forested "Terra Preta de Indio" or Amazonian Dark Earth soils (anthropogenic soils) were compared with those from adjacent non-anthropogenic soils (control soils) using elemental and thermogravimetric analyses, and a variety of solid-state nuclear magnetic resonance techniques. The thermogravimetric index, which indicates the molecular thermal resistance, was greater for the anthropogenic soils than for the control soils suggesting polycyclic aromatic components in the former. The cultivated anthropogenic soils were more enriched in C and depleted in H than the anthropogenic soils under forest, as the result of the selective degradation of aliphatic structures and the possible enrichment of H-deficient condensed aromatic structures. The combination of variable amplitude cross-polarization (VACP) and chemical shift anisotropy with total suppression of spinning sidebands experiments with composite pi pulses could be used to quantify the aromaticity of the HAs from the anthropogenic soils. From principal component analysis, using the VACP spectra, it was possible to separate the different constituents of the HAs, such as the carboxylated aromatic structures, from the anthropogenic soils and plant derived compounds. The data show that the HAs from anthropogenic soils have high contents of aryl and ionisable oxygenated functional groups, and the major functionalities from adjacent control soils are oxygenated functional groups from labile structures (carbohydrates, peptides, and with evidence for lignin structures). The anthropogenic soils HAs can be considered to be more recalcitrant, and with more stable reactive functional groups which may, in part, explain their more sustainable fertility due to the organic matter contribution to the soil cation exchange capacity.     

Arsenic speciation and volatilization from flooded paddy soils amended with different organic matters

Arsenic (As) methylation and volatilization in soil can be increased after organic matter (OM) amendment, though the factors influencing this are poorly understood. Herein we investigate how amended OM influences As speciation as well as how it alters microbial processes in soil and soil solution during As volatilization. Microcosm experiments were conducted on predried and fresh As contaminated paddy soils to investigate microbial mediated As speciation and volatilization under different OM amendment conditions. These experiments indicated that the microbes attached to OM did not significantly influence As volatilization. The arsine flux from the treatment amended with 10% clover (clover-amended treatment, CT) and dried distillers grain (DDG) (DDG-amended treatment, DT2) were significantly higher than the control. Trimethylarsine (TMAs) was the dominant species in arsine derived from CT, whereas the primary arsine species from DT2 was TMAs and arsine (AsH(3)), followed by monomethylarsine (MeAsH(2)). The predominant As species in the soil solutions of CT and DT2 were dimethylarsinic acid (DMAA) and As(V), respectively. OM addition increased the activities of arsenite-oxidizing bacteria (harboring aroA-like genes), though they did not increase or even decrease the abundance of arsenite oxidizers. In contrast, the abundance of arsenate reducers (carrying the arsC gene) was increased by OM amendment; however, significant enhancement of activity of arsenate reducers was observed only in CT. Our results demonstrate that OM addition significantly increased As methylation and volatilization from the investigated paddy soil. The physiologically active bacteria capable of oxidization, reduction, and methylation of As coexisted and mediated the As speciation in soil and soil solution.     

Evidence for nonlinear binding of PAHs to dissolved humic acids

Binding of pyrene, fluoranthene, and phenanthrene to dissolved humic acids (HA) was determined by the fluorescence quenching (FQ) and complexation-flocculation (CF) methods. Determinations by the CF method, using varying contaminant concentrations and a constant HA concentration, yielded nonlinear Freundlich-type isotherms (n = 0.65-0.84). Experiments using both the CF and the FQ methods with varying HA concentrations and a constant contaminant concentration yielded curved "Stern-Volmer"-type plots that also indicate nonlinear binding. These findings suggest that linear partitioning or site complexation in the presence of excess available sites cannot fully describe the interactions of hydrophobic compounds with dissolved humic material. Site-specific hydrophobic interactions at limited interior or external molecular surfaces may be considered.     

Effect of two organic amendments on norflurazon retention and release by soils of different characteristics

The influence of two organic amendments on norflurazon sorption-desorption processes in four soils with very different physicochemical characteristics was studied in laboratory experiments to evaluate the potential leaching of this pesticide through organic fertilized soils. Sorption-desorption experiments were performed on original soils and on a mixture of these soils with urban waste compost (SUW) and a commercial amendment from olive-mill wastes (OW), at a rate of 6.25% (w/w). These mixtures were used immediately after preparation and after aging for 2 months. Norflurazon was analyzed by using a HPLC method. Norflurazon retention in original soils was related not only to the organic matter (OM) content but also to mineral surfaces present in soils. Norflurazon sorption increases largely after amendment in soils with low OM content, but the addition of exogenous OM to soils with medium OM content and/or other available adsorptive surfaces did not significantly affect norflurazon sorption. Even in some cases pesticide sorption decreases, due to the blocking of the mineral and organic soil surfaces with the amendment added. Transformation of exogenous OM during incubation depends both on the amendment added and on the type of soil and can affect sorption-desorption behavior of the soils surfaces in different manner, due to the modification of their hydrophobic-hydrophilic characteristics. Norflurazon desorption from original soils showed hysteresis in all cases, but it was not affected or even decreased in amended soils. It was a nonexpected behavior, especially in sandy soil, since it is generally assumed that a higher sorption always implies a lower mobility in soils. Norflurazon sorption must be taking place on very low affinity sites on exogenous OM through weak bindings, from which the pesticide can be easily desorbed. The application to soils of the organic amendments used in the present study could not be accepted to reduce norflurazon losses due to leaching processes.     

Nonideal binding between dissolved humic acids and polyaromatic hydrocarbons

Interactions between hydrophobic organic chemicals (HOCs) and dissolved organic matter (DOM) are of environmental significance due to their influence on mobility and bioavailability of HOCs. The linear dissolution concept has been widely used to describe the interactions between HOCs and DOM, but it may not be correct. To date there is no systematic evaluation of nonideal interactions between HOCs and DOM. Therefore, this study employed a dialysis method to investigate sorption, desorption, and competition of two polyaromatic hydrocarbons (PAHs), phenanthrene (PHE) and pyrene (PYR), by two DOMs at pHs of 4, 7, and 11. Nonlinear interactions between PAHs and DOM and desorption hysteresis were consistently observed. The isotherm nonlinearity factor, nvalue, increased significantly after the addition of cosolutes, indicating the occupation of specific binding sites by the cosolute molecules. Significant influence of pH on PAHs-DOM interaction was also observed (higher binding coefficients, stronger desorption hysteresis, and increased nonlinearity at lower pH). This study for the first time systematically showed the nonideal binding behavior of PAHs by DOM. A more complete model rather than linear distribution is required to describe the interactions between HOCs and DOM. Conformation changes of DOM molecules were proposed to explain the interactions between HOCs and DOM.     

Modeling metal binding to soils: the role of natural organic matter

The use of mechanistically based models to simulate the solution concentrations of heavy metals in soils is complicated by the presence of different sorbents that may bind metals. In this study, the binding of Zn, Pb, Cu, and Cd by 14 different Swedish soil samples was investigated. For 10 of the soils, it was found that the Stockholm Humic Model (SHM) was able to describe the acid-base characteristics, when using the concentrations of "active" humic substances and Al as fitting parameters. Two additional soils could be modeled when ion exchange to clay was also considered, using a component additivity approach. For dissolved Zn, Cd, Ca, and Mg reasonable model fits were produced when the metal-humic complexation parameters were identical for the 12 soils modeled. However, poor fits were obtained for Pb and Cu in Aquept B horizons. In two of the soil suspensions, the Lund A and Romfartuna Bhs, the calculated speciation agreed well with results obtained by using cation-exchange membranes. The results suggest that organic matter is an important sorbent for metals in many surface horizons of soils in temperate and boreal climates, and the necessity of properly accounting for the competition from Al in simulations of dissolved metal concentrations is stressed.     

Arsenite and arsenate binding to dissolved humic acids: influence of pH, type of humic acid, and aluminum

The fate of arsenic in the aquatic environment is influenced by dissolved natural organic matter (DOM). Using an equilibrium dialysis method, conditional distribution coefficients (Dom) for As(III) and As(V) binding onto two commercial humic acids were determined at environmentally relevant As/dissolved organic carbon (DOC) ratios and as a function of pH. At all pH values, As(V) was more strongly bound than As(III). Maximum binding was observed around pH 7, which is consistent with H+ competition for binding sites at low pH values and OH- competition for the arsenic center at high pH. For both oxidation states, Dom values increased with decreasing As/DOC ratios. Dom values were fitted as a function of the As/DOC ratio for As(III) and As(V). Compared to the aquatic humic acid, the terrestrial humic acid had a higher affinity for arsenic binding with 1.5-3 times higher Dom values under the same conditions. Al3+ in excess to arsenic successfully competed for strong binding sites at low As/DOC ratios. Under environmentally relevant conditions, about 10% of total As(V) may be bound to DOM, whereas >10% of As(III) is bound to DOM at very low As/DOC ratios only. Binding of arsenic to DOM should be considered in natural systems.     

History-dependent sorption in humic acids and a lignite in the context of a polymer model for natural organic matter

We examined sorption of two apolar compounds in three samples of macromolecular natural organic matter (NOM) in order to test whether history-dependent ("irreversible") behaviors, including sorption hysteresis and the conditioning effect, agree with a pore deformation/creation hypothesis applicable to the glassy organic solid state as proposed in the polymer literature. The compounds are 1,2,4-trichlorobenzene (TCB) and naphthalene (Naph). The NOM samples are a soil humic acid (H-HA), an Al3+-exchanged form of the same humic acid (Al-HA), and a low-rank coal (Beulah-Zap lignite, BZL). The HAs, at least, are believed free of environmental black carbon. The degree of nonlinearity in the isotherm and the ratio of hole-filling to solid-phase dissolution increased in the order of hardness (stiffness) of the solid: H-HA < Al-HA < BZL. Independent of solid, solutes show a 14-18 kJ/mol preference for hole "sites" as compared to dissolution "sites", which we attribute to the free energy needed in the dissolution domain to create a cavity to accommodate the solute. All solids exhibited hysteresis and the conditioning effect, which refers to enhanced re-sorption after pretreatment with a conditioning agent (in this case, chlorobenzene). Conditioning the sample results in increased sorption and increased contribution of hole-filling relative to dissolution. The effects of original hole population, matrix stiffness, and solute concentration on the hysteresis index and on the magnitude of the conditioning effect are consistent with a pore-deformation mechanism as the underlying cause of sorption irreversibility. This mechanism involves concurrent processes of irreversible hole expansion and the creation of new holes by the incoming sorbate (or conditioning agent). The results show that nonlinear and irreversible behavior may be expected for macromolecular forms of NOM that are in a glassy state and emphasize the case that NOM is not a passive sorbent but may be physically altered by the sorbate.     

Proton and trivalent metal cation binding by dissolved organic matter in the opalinus clay and the callovo-oxfordian formation

We investigated the proton and trivalent metal binding of dissolved organic matter (DOM) in in situ pore water and anoxic rock extracts of two potential host rocks for the disposal of radioactive waste, i.e., the Opalinus Clay (OPA) and the Callovo-Oxfordian formation (COx). The proton, curium, and europium binding properties of the OPA pore water and the extracted DOM of both rocks were studied with acid-base titrations, time-resolved laser fluorescence spectroscopy (TRLFS), and voltammetry, respectively. Protons were mostly buffered by inorganic compounds. DOM contributed to the total proton buffering capacity of the samples only to a small extent. Significant complexation of curium by DOM was observed for OPA pore water by TRFLS in contrast to little complexation by DOM detected in the OPA and COx extracts. The data on europium binding in OPA pore water were described by the presence of 14.3 microM organic ligands exhibiting a conditional affinity constant of log beta = 6.50. Calculations of europium speciation under in situ conditions indicated that carbonates largely controlled the speciation of europium in OPA and COx. In the OPA formation, the presence of DOM may enhance the solubility of europium by 5 x 10(-8) M, representing about one-third of total dissolvable europium.     

Gene quantification by the NanoGene assay is resistant to inhibition by humic acids

NanoGene assay is a magnetic bead and quantum dot nanoparticles based gene quantification assay. It relies on a set of probe and signaling probe DNAs to capture the target DNA via hybridization. We have demonstrated the inhibition resistance of the NanoGene assay using humic acids laden genomic DNA (gDNA). At 1 μg of humic acid per mL, quantitiative PCR (qPCR) was inhibited to 0% of its quantification capability whereas NanoGene assay was able to maintain more than 60% of its quantification capability. To further increase the inhibition resistance of NanoGene assay at high concentration of humic acids, we have identified the specific mechanisms that are responsible for the inhibition. We examined five potential mechanisms with which the humic acids can partially inhibit our NanoGene assay. The mechanisms examined were (1) adsorption of humic acids on the particle surface; (2) particle aggregation induced by humic acids; (3) fluorescence quenching of quantum dots by humic acids during hybridization; (4) humic acids mimicking of target DNA; and (5) nonspecific binding between humic acids and target gDNA. The investigation showed that no adsorption of humic acids onto the particles' surface was observed for the humic acids' concentration. Particle aggregation and fluorescence quenching were also negligible. Humic acids also did not mimic the target gDNA except 1000 μg of humic acids per mL and hence should not contribute to the partial inhibition. Four of the above mechanisms were not related to the inhibition effect of humic acids particularly at the environmentally relevant concentrations (<100 μg/mL). However, a substantial amount of nonspecific binding was observed between the humic acids and target gDNA. This possibly results in lesser amount of target gDNA being captured by the probe and signaling DNA.     

Suspending multi-walled carbon nanotubes by humic acids from a peat soil

Suspension of the pristine and COOH-substituted multi-walled carbon nanotubes (P- and C-MWCNTs) with different outer diameters (ODs) by humic acids (HAs) from a peat soil was examined. Under shaking condition, MWCNTs were not suspended within 5 d. Without HAs, C-MWCNTs were slightly suspended by sonication within 16 h, but no suspension was observed for the pristine ones (P-MWCNTs). HAs greatly enhanced suspension of both P- and C-MWCNTs. The suspension enhancement was attributed to HA sorption, which increased electrostatic repulsion and steric hindrance between individual MWCNTs. Introduction of O-containing hydrophilic moieties to MWCNTs via HA sorption enhanced the interactions of their surfaces with water through H-bonding. Suspending capability of various MWCNTs on suspended mass concentration basis by four HAs showed inconsistent orders with the increasing or decreasing trend of their ODs. However, the suspended surface area concentrations of both P- and C-MWCNTs by individual HAs consistently followed an order of P8 > P30 > P50, and C8 > C30 > C50 (P and C, respectively, refer to P- and C-MWCNTs, and the numbers represent their ODs). These data implied that MWCNTs with smaller OD could be more strongly suspended by a given HA relative to those with larger OD under sonication condition.     

Characterization and copper binding of humic and nonhumic organic matter isolated from the South Platte River: evidence for the presence of nitrogenous binding site

Humic substances typically constitute 40-60% of the dissolved organic matter (DOM) in surface waters. However, little information is available regarding the metal binding properties of the nonhumic hydrophilic portion of the DOM. In this study, humic and nonhumic DOM samples were isolated from the South Platte River (Colorado, DOC = 2.6 mg x L(-1), SUVA254 = 2.4 L/mg x m) using a two-column array of XAD-8 and XAD-4 resins. The three major isolated fractions of DOM, which accounted for 57% of the bulk DOM,were characterized using a variety of analytical tools. Proton and copper binding properties were studied for each fraction. The main objective of this work was to compare the structural and chemical characteristics of the isolated fractions and test models describing DOM reactivity toward metal ions. The characterization work showed significant structural differences between the three isolated fractions of DOM. The hydrophobic acid fraction (i.e., humic substances isolated from the XAD-8 resin) gave the largest C/H, C/O, and C/N ratios and aromatic carbon content among the three isolated fractions. The transphilic acid (TPHA) fraction ("transphilic" meaning fraction of intermediate polarity isolated from the XAD-4 resin) was found to incorporate the highest proportion of polysaccharides, whereas the transphilic neutral (TPHN) fraction was almost entirely proteinaceous. The gradual increase of the charge with pH for the three DOM fractions is most likely caused by a large distribution of proton affinity constants for the carboxylic groups, as well as a second type of group more generally considered to be phenolic. In the case of the DOM fraction enriched in proteinaceous material (i.e., TPHN fraction), the results showed that the amino groups are responsible for the charge reversal. For low copper concentrations, nitrogen-containing functional groups similar to those of amino acids are likely to be involved in complexation, in agreement with previously published data.