Overlapping chromosomal regions for fertility traits and production traits in the Danish Holstein population

Before implementing selection based on quantitative trait loci (QTL) for fertility, it is important to determine the existence of correlated effects between the fertility QTL and QTL with effects on production traits. When a QTL is detected for a trait that is a composite of subtraits, it is of interest to validate which of the subtraits are affected by the QTL. Phenotypic and marker data were collected from 34 grandsire families from the Danish Holstein population. First, the trait data for “fertility treatments” were separated into their underlying subtraits: uterine infections, antibiotics placed in the placenta, and abortions. In addition, retained placenta was selected for analysis because it is related to uterine infections. A genome scan was performed using 416 microsatellite markers for the fertility treatment subtraits and retained placenta, and an additional genome scan for milk production traits conditional on the QTL regions for the subtraits and retained placenta was conducted. Second, we selected 24 genomic regions harboring QTL for fertility traits from a previous study. A QTL scan for milk production traits conditional on the selected regions was conducted. We found that 16 selected genomic regions containing a QTL for fertility (including the fertility treatment subtraits and retained placenta) also harbored QTL for milk yield or milk composition traits. Furthermore, 12 QTL regions corresponding to 9 different fertility traits (including the fertility treatment subtraits) did not harbor a QTL for milk production or milk composition traits; that is, the region was specific for the fertility trait. The genome scan for the fertility treatment subtraits did not correspond to the QTL found for fertility treatments. No QTL were detected for the subtrait abortion, however genome scans for retained placenta revealed 4 different QTL.     

Climatic effects on milk production traits and somatic cell score in lactating Holstein-Friesian cows in different housing systems

The objective of this study was to compare the effect of the temperature-humidity index (THI) on milk production traits and somatic cell score (SCS) of dairy cows raised in 4 different housing systems: (1) warm loose housing with access to grazing (WG), (2) warm loose housing without access to grazing (WI), (3) cold loose housing with access to grazing (CG), and (4) cold loose housing without access to grazing (CI). For each of the 4 housing systems, 5 farms with a herd size of 70 to 200 lactating cows in Lower Saxony, Germany, were studied. Ambient temperature and relative humidity were recorded hourly in each barn to calculate THI. Milk production data included 21,546 test-day records for milk, fat, and protein yield, and SCS. These data were associated with the average THI of the 3 d preceding the respective measurement, which was divided into 6 classes (<45, ≥45 to <50, ≥50 to <55, ≥55 to <60, ≥60 to <65, and ≥65). Furthermore, bulk milk samples including the fat and protein percentage, and SCS taken 4 to 6 times per month were associated with the average and maximum THI of the 3 d before sampling. Data were recorded from April 2010 to March 2011. In each of the housing systems, monthly THI values above 60, indicating heat stress, were recorded between June and September, with higher values in WI and WG. In all systems, fat-corrected milk, fat, and protein yields of the test-day records decreased in tendency from 60 ≤ THI < 65 to THI >65. In WI and CI, values for SCS were greater in the class THI >65 than in 60 ≤ THI < 65, whereas no difference between any of the THI classes was found in WG and CG. The fat and protein percentage of the bulk milk samples decreased with increasing 3-d maximum THI in all 4 systems, whereas the SCS increased with increasing 3-d average THI. In conclusion, negative effects of heat stress conditions under a temperate climate on milk production traits and SCS were found, although a housing system being superior to the other systems in altering heat stress effects was not identified.     

Genetic and phenotypic relationships among endocrine and traditional fertility traits and production traits in Holstein-Friesian dairy cows

The objective of this study was to estimate the heritability of a number of traditional and endocrine fertility traits in addition to d-56 predicted milk yield (MY56), and the genetic and phenotypic correlations between these traits. Various fixed effects such as season, year, herd, lactation number, diet, percentage Holstein (PCH) of the cow, and occurrence of uterine infection (UI), dystocia (DYS), and retained placenta (RP) were also investigated. Data collected for 1212 lactations of 1080 postpartum (PP) Holstein-Friesian dairy cows in eight commercial farms between 1996 and 1999 included thrice weekly milk progesterone samples, calving and insemination dates, various reproductive health records, monthly/bimonthly production records, three-generation pedigrees, and PCH information. Genetic models were fitted to the data to obtain heritabilitites and correlations using ASREML. Estimates of heritability for interval to commencement of luteal activity PP (lnCLA), length of the first luteal phase PP (lnLutI) and occurrence of persistent CL type I (PCLI) were 0.16, 0.17, and 0.13, respectively. Heritabilities for pregnancy to first service (PFS), interval to first service (IFS), and MY56 were 0.14, 0.13, and 0.50, respectively. Genetic regressions of lnCLA and lnLutI on PTA of the sire for milk, fat, and protein yields, and PIN95 were investigated. Regressions of lnCLA were positive and significant on fat yield, while regressions of lnLutI on both protein yield and PIN95 were negative and significant. Genetic correlations of endocrine fertility traits (lnCLA, lnLutI, and PCLI) with MY56 were high (0.36, P < 0.05; -0.51, P < 0.05; and -0.31, P < 0.1, respectively). Percentage Holstein of the cows had no significant effect on any of the fertility parameters monitored. This work emphasizes the strong genetic correlation of fertility with production traits and, therefore, highlights the urgent requirement for selective breeding for fertility in the United Kingdom. The high heritability of endocrine fertility traits stress their potential value for inclusion in a selection index to improve fertility.     

Genetic parameters for milk somatic cell score and relationship with production and udder type traits in dairy Alpine and Saanen primiparous goats

Goat milk somatic cell counts have been collected for several years in France by the national milk recording organization. Information is used for health management, because repeatedly elevated somatic cell counts are a good indirect predictor of intramammary infection. Genetic parameters were estimated for 67,882 and 49,709 primiparous goats of the dairy Alpine and Saanen breeds, respectively, with complete information for milk somatic cell counts and milk production traits. About 40% of the goats had additional information for 11 udder type traits scored by official classifiers of the breeders’ association CAPGENES. Estimates were obtained by REML with an animal model. The studied trait was lactation somatic cell score (LSCS), the weighted mean of somatic cell score (log-transformed SCC) adjusted for lactation stage. Heritability of LSCS was 0.20 and 0.24 in the Alpine and Saanen breeds, respectively. Relationships with milk production and udder type traits were additionally estimated by using multitrait analyses. Heritability estimates in first lactation ranged from 0.30 to 0.35 for lactation milk, fat, and protein yields; from 0.60 to 0.67 for fat and protein contents; and from 0.22 to 0.50 for udder type traits. Genetic correlations of somatic cell score with milk production traits were generally low, ranging from −0.13 to 0.12. Slightly more negative correlations were estimated for fat content: −0.18 and −0.20 in Saanen and Alpine breeds, respectively. Lactation somatic cell score was genetically correlated with udder floor position (r_g = −0.24 and −0.19 in the Alpine and Saanen breeds, respectively), and, in Saanen, teat length, teat width, and teat form (r_g = 0.29, 0.34 and −0.27, respectively). These results suggest that a reduction in somatic cell count can be achieved by selection while still improving milk production and udder type and teat traits.     

Genetic and phenotypic relationships among milk urea nitrogen, fertility, and milk yield in holstein cows

The aims of the study were to evaluate the relationships among milk urea nitrogen and nonreturn rates at the phenotypic scale, and to estimate genetic parameters among milk urea nitrogen, milk yield, and fertility traits in the early period of lactation. Milk yield, protein percentage, the interval from calving to first service, and 56- and 90-d nonreturn rates were available from 73,344 Holstein cows from 2,178 different herds located in a region in northwestern Germany. Generalized linear models with a logit link function were applied to assess the phenotypic relationships. Bivariate threshold-threshold, linear-threshold, and linear-linear models, fitted in a Bayesian framework, were used to estimate genetic correlations among traits. Milk yield, protein percentage, and milk urea nitrogen were means from test-day 1 (on average 20.8 d in milk) and test-day 2 (on average 53.1 d in milk) after calving. An increase in milk urea nitrogen was associated with decreasing 56-d nonreturn rates on the phenotypic scale. At fixed levels of milk urea nitrogen, greater values of protein percentage, indicating a surplus of energy in the feed, were positively associated with nonreturn rates. Heritabilities were 0.03 for 56- and 90-d nonreturn rates, 0.07 for interval from calving to first service, 0.13 for milk urea nitrogen, and 0.19 for milk yield. Service sire explained a negligible part (below 0.15%) of the total variance for nonreturn rates. Genetic correlations between the interval from calving to first service and nonreturn rates were close to zero. The genetic correlation between nonreturn rates was 0.94, suggesting that a change from nonreturn after 90 d to nonreturn after 56 d in the national genetic evaluation would not result in any loss of information. The genetic correlation between milk yield and nonreturn after 56 d was −0.31, and between milk yield and calving to first service was 0.14, both indicating an antagonistic relationship between production and reproduction. The genetic correlation between milk yield and milk urea nitrogen was 0.44, reflecting an energy deficiency in early lactation. The genetic correlations between milk urea nitrogen and nonreturn rates were too weak (−0.19 for 56-d nonreturn rate, and −0.23 for 90-d nonreturn rate) to justify the use of milk urea nitrogen as an additional trait in genetic selection for fertility, as demonstrated by selection index calculations.     

Genetic parameters for fertility of dairy heifers and cows at different parities and relationships with production traits in first lactation

The objectives of this study were to estimate genetic parameters for fertility of Brown Swiss cattle, considering reproductive measures in different parities as different traits, and to estimate relationships between production traits of first lactation and fertility of heifers and first-parity and second-parity cows. Reproductive indicators were interval from parturition to first service, interval from first service to conception, interval from parturition to conception, number of inseminations to conception, conception rate at first service, and nonreturn rate at 56 d after first service. Production traits were peak milk yield (pMY), lactation milk yield, and lactation length (LL). Data included 37,546 records on heifers, and 24,098 and 15,653 records on first- and second-parity cows, respectively. Cows were reared in 2,035 herds, calved from 1999 to 2007, and were progeny of 527 AI bulls. Gibbs sampling was implemented to obtain (co)variance components using both univariate and bivariate threshold and censored linear sire models. Estimates of heritability for reproductive traits in heifers (0.016 to 0.026) were lower than those in first-parity (0.017 to 0.142) and second-parity (0.026 to 0.115) cows. Genetic correlations for fertility in first- and second-parity cows were very high (>0.920), whereas those between heifers and lactating cows were moderate (0.348 to 0.709). The latter result indicates that fertility in heifers is a different trait than fertility in lactating cows, and hence it cannot be used as robust indicator of cow fertility. Heifer fertility was not related to production traits in first lactation (genetic correlations between −0.215 and 0.251). Peak milk yield exerted a moderate and unfavorable effect on the interval from parturition to first service (genetic correlations of 0.414 and 0.353 after first and second calving, respectively), and a low and unfavorable effect on other fertility traits (genetic correlations between −0.281 and 0.295). Infertility after first calving caused a strong elongation of the lactation, and LL was negatively correlated with fertility of cows after second calving, so that LL can itself be regarded as a measure of fertility. Lactation milk yield depends on both pMY and LL, and, as such, is a cause and consequence of (in)fertility.     

Genetic relationship between culling, milk production, fertility, and health traits in Norwegian red cows

First-lactation records on 836,452 daughters of 3,064 Norwegian Red sires were used to examine associations between culling in first lactation and 305-d protein yield, susceptibility to clinical mastitis, lactation mean somatic cell score (SCS), nonreturn rate within 56 d in heifers and primiparous cows, and interval from calving to first insemination. A Bayesian multivariate threshold-linear model was used for analysis. Posterior mean of heritability of liability to culling of primiparous cows was 0.04. The posterior means of the genetic correlations between culling and the other traits were −0.41 to 305-d protein yield, 0.20 to lactation mean SCS, 0.36 to clinical mastitis, 0.15 to interval from calving to first insemination, −0.11 to 56-d nonreturn as heifer, and −0.04 to 56-d nonreturn as primiparous cow. As much as 66% of the genetic variation in culling was explained by genetic variation in protein yield, clinical mastitis, interval of calving to first insemination, and 56-d nonreturn in heifers, whereas contribution from the SCS and 56-d nonreturn as primiparous cow was negligible, after taking the other traits into account. This implies that for breeds selected for a broad breeding goal, including functional traits such as health and fertility, most of the genetic variation in culling will probably be covered by other traits in the breeding goal. However, in populations where data on health and fertility is scarce or not available at all, selection against early culling may be useful in indirect selection for improved health and fertility. Regression of average sire posterior mean on birth-year of the sire indicate a genetic change equivalent to an annual decrease of the probability of culling in first-lactation Norwegian Red cattle by 0.2 percentage units. This genetic improvement is most likely a result of simultaneous selection for improved milk yield, health, and fertility over the last decades.     

Genetic parameters for yield traits of cows treated or not treated with bovine somatotropin

The objective of this study was to estimate genetic correlations between yield traits of cows treated with bovine somatotropin (bST) and the same yield traits of untreated cows. Lactation records from registered Holstein cows were divided by parity into 3 data sets: 1, 2, and 3 through 5. Approximately 10% of the records in each data set were from cows treated with bST. The numbers of records of treated and untreated cows in the data sets were 4,337 and 48,765; 3,730 and 37,796; and 3,645 and 33,957. Two-trait animal models (records for cows treated or not treated) were used to estimate genetic parameters for milk production traits and somatic cell score (SCS). Estimates of heritability for milk yield for records of treated and untreated cows for the 3 data sets were 0.13, 0.16, and 0.09, and 0.18, 0.18, and 0.14, respectively, with estimates of repeatability of 0.50 and 0.41 for data set 3. Estimates of heritability for fat yield for records of treated and untreated cows were 0.31, 0.16, and 0.12, and 0.27, 0.21, and 0.16. Estimates of repeatability were 0.50 and 0.43 for data set 3. Heritability estimates for protein yield for records of treated and untreated cows were 0.13, 0.17, and 0.12, and 0.20, 0.23, and 0.16, with estimates of repeatability of 0.52 and 0.47. Estimates of heritability for SCS for treated and untreated cows were 0.08, 0.15, and 0.13, and 0.11, 0.13, and 0.13 with repeatability estimates of 0.52 and 0.45. Estimates of genetic correlations between milk yields with and without bST treatment in lactations 1, 2, and 3 to 5 were all 0.99. Estimates of genetic correlations for fat and protein yields were 0.96 for all data sets. Estimates for SCS were 0.99. Estimates of genetic correlations between records of treated and untreated cows were large enough to conclude that records of treated and untreated cows could be considered to be one trait, with treatment as a fixed effect to account for differences in means.     

Genetic line comparisons and genetic parameters for endoparasite infections and test-day milk production traits

Keeping dairy cows in grassland systems relies on detailed analyses of genetic resistance against endoparasite infections, including between- and within-breed genetic evaluations. The objectives of this study were (1) to compare different Black and White dairy cattle selection lines for endoparasite infections and (2) the estimation of genetic (co)variance components for endoparasite and test-day milk production traits within the Black and White cattle population. A total of 2,006 fecal samples were taken during 2 farm visits in summer and autumn 2015 from 1,166 cows kept in 17 small- and medium-scale organic and conventional German grassland farms. Fecal egg counts were determined for gastrointestinal nematodes (FEC-GIN) and flukes (FEC-FLU), and fecal larvae counts for the bovine lungworm Dictyocaulus viviparus (FLC-DV). The lowest values for gastrointestinal nematode infections were identified for genetic lines adopted to pasture-based production systems, especially selection lines from New Zealand. Heritabilities were low for FEC-GIN (0.05–0.06 ± 0.04) and FLC-DV (0.05 ± 0.04), but moderate for FEC-FLU (0.33 ± 0.06). Almost identical heritabilities were estimated for different endoparasite trait transformations (log-transformation, square root). The genetic correlation between FEC-GIN and FLC-DV was 1.00 ± 0.60, slightly negative between FEC-GIN and FEC-FLU (?0.10 ± 0.27), and close to zero between FLC-DV and FEC-FLU (0.03 ± 0.30). Random regression test-day models on a continuous time scale [days in milk (DIM)] were applied to estimate genetic relationships between endoparasite and longitudinal test-day production traits. Genetic correlations were negative between FEC-GIN and milk yield (MY) until DIM 85, and between FEC-FLU and MY until DIM 215. Genetic correlations between FLC-DV and MY were negative throughout lactation, indicating improved disease resistance for high-productivity cows. Genetic relationships between FEC-GIN and FEC-FLU with milk protein content were negative for all DIM. Apart from the very early and very late lactation stage, genetic correlations between FEC-GIN and milk fat content were negative, whereas they were positive for FEC-FLU. Genetic correlations between FEC-GIN and somatic cell score were positive, indicating similar genetic mechanisms for susceptibility to udder and endoparasite infections. The moderate heritabilities for FEC-FLU suggest inclusion of FEC-FLU into overall organic dairy cattle breeding goals to achieve long-term selection response for disease resistance.     

Identification of single nucleotide polymorphisms in the bovine interleukin-12 and interleukin-23 receptor genes and their associations with health and production traits in Holstein cows

Interleukin-12 (IL-12) and interleukin-23 (IL-23) are proinflammatory cytokines produced by macrophages and dendritic cells in response to infection with intracellular pathogens. The IL-12 receptor (IL-12R) is a heterodimer composed of 2 subunits, β1 and β2. The IL-23 receptor (IL-23R) is a heterodimer composed of the IL-12Rβ1 subunit and a unique IL-23R subunit. Given the importance of IL-12 and IL-23 for modulating inflammation and the host immune response, the IL-12 and IL-23 receptor genes may be suitable candidate genes for studying disease resistance in dairy cattle. We hypothesize that single nucleotide polymorphisms (SNP) exist within these genes and that they contribute to variation in health and production traits in dairy cattle. To investigate this, a selective DNA pool was constructed using bull semen based on the estimated breeding values for somatic cell score (SCS), an indicator trait used to achieve genetic improvement for resistance to mastitis. Gene segments were amplified from this pool by PCR and the amplicons were sequenced to reveal SNP. A total of 10 SNP, including 2 in IL-12Rβ1, 5 in IL-12Rβ2, and 3 in IL-23R were identified. The SNP (n = 5) were found in the 5′ untranslated region (UTR) putative promoter regions of the genes, and SNP IL-23R c.1714A > C was a nonsynonymous SNP. Canadian Holstein bulls (n = 492) were genotyped using Sequenom MassARRAY (Sequenom Inc., San Diego, CA). No association was found with SCS based on bull deregressed estimated breeding values for SCS; however, associations of SNP in the IL-12Rβ2 gene (c.-511A > G, c.87A > G, c.2957A > C) were found with milk and protein yield. Further investigation will be required to elucidate the biological and practical relevance of these SNP.     

Genetic parameters for female fertility, locomotion, body condition score, and linear type traits in Czech Holstein cattle

The aim of this study was to estimate genetic parameters for fertility traits and linear type traits in the Czech Holstein dairy cattle population. Phenotypic data regarding 12 linear type traits, measured in first lactation, and 3 fertility traits, measured in each of first and second lactation, were collected from 2005 to 2009 in the progeny testing program of the Czech-Moravian Breeders Corporation. The number of animals for each linear type trait was 59,467, except for locomotion, where 53,436 animals were recorded. The 3-generation pedigree file included 164,125 animals. (Co)variance components were estimated using AI-REML in a series of bivariate analyses, which were implemented via the DMU package. Fertility traits included days from calving to first service (CF1), days open (DO1), and days from first to last service (FL1) in first lactation, and days from calving to first service (CF2), days open (DO2), and days from first to last service (FL2) in second lactation. The number of animals with fertility data varied between traits and ranged from 18,915 to 58,686. All heritability estimates for reproduction traits were low, ranging from 0.02 to 0.04. Heritability estimates for linear type traits ranged from 0.03 for locomotion to 0.39 for stature. Estimated genetic correlations between fertility traits and linear type traits were generally neutral or positive, whereas genetic correlations between body condition score and CF1, DO1, FL1, CF2 and DO2 were mostly negative, with the greatest correlation between BCS and CF2 (−0.51). Genetic correlations with locomotion were greatest for CF1 and CF2 (−0.34 for both). Results of this study show that cows that are genetically extreme for angularity, stature, and body depth tend to perform poorly for fertility traits. At the same time, cows that are genetically predisposed for low body condition score or high locomotion score are generally inferior in fertility.     

Parameters for milk somatic cell score and relationships with production traits in primiparous dairy sheep

A total of 13,066 first-lactation test-day records of 2,277 Valle del Belice ewes from 17 flocks were used to estimate genetic parameters for somatic cell scores (SCS) and milk production traits, using a repeatability test-day animal model. Heritability estimates were low and ranged from 0.09 to 0.14 for milk, fat, and protein yields, and contents. For SCS, the heritability of 0.14 was relatively high. The repeatabilities were moderate and ranged from 0.29 to 0.47 for milk production traits. The repeatability for SCS was 0.36. Flock-test-day explained a large proportion of the variation for milk production traits, but it did not have a big effect on SCS. The genetic correlations of fat and protein yields with fat and protein percentages were positive and high, indicating a strong association between these traits. The genetic correlations of milk production traits with SCS were positive and ranged from 0.16 to 0.31. The results showed that SCS is a heritable trait in Valle del Belice sheep and that single-trait selection for increased milk production will also increase SCS.     

Genetic parameters for body weight from birth to calving and associations between weights with test-day,health, and female fertility traits

A data set including 57,868 records for calf birth weight (CABW) and 9,462 records for weight at first insemination (IBW) were used for the estimation of direct and maternal genetic effects in Holstein Friesian dairy cattle. Furthermore, CABW and IBW were correlated with test-day production records and health traits in first-lactation cows, and with nonreturn rates in heifers. Health traits considered overall disease categories from the International Committee for Animal Recording diagnosis key, including the general disease status, diarrhea, respiratory diseases, mastitis, claw disorders, female fertility disorders, and metabolic disorders. For single-trait measurements of CABW and IBW, animal models with maternal genetic effects were applied. The direct heritability was 0.47 for CABW and 0.20 for IBW, and the direct genetic correlation between CABW and IBW was 0.31. A moderate maternal heritability (0.19) was identified for CABW, but the maternal genetic effect was close to zero for IBW. The correlation between direct and maternal genetic effects was antagonistic for CABW (?0.39) and for IBW (?0.24). In bivariate animal models, only weak genetic and phenotypic correlations were identified between CABW and IBW with either test-day production or health traits in early lactation. Apart from metabolic disorders, there was a general tendency for increasing disease susceptibilities with increasing CABW. The genetic correlation between IBW and nonreturn rates in heifers after 56 d and after 90 d was slightly positive (0.18), but close to zero when correlating nonreturn rates with CABW. For the longitudinal BW structure from birth to the age of 24 mo, random regression models with the time-dependent covariate “age in months” were applied. Evaluation criteria (Bayesian information criterion and residual variances) suggested Legendre polynomials of order 3 to modeling the longitudinal body weight (BW) structure. Direct heritabilities around birth and insemination dates were slightly larger than estimates for CABW and IBW from the single-trait models, but maternal heritabilities were exactly the same from both models. Genetic correlations between BW were close to 1 for neighboring age classes, but decreased with increasing time spans. The genetic correlation between BW at d 0 (birth date) and at 24 mo was even negative (?0.20). Random regression model estimates confirmed the antagonistic relationship between direct and maternal genetic effects, especially during calfhood. This study based on a large data set in dairy cattle confirmed genetic parameters and (co)variance components for BW as identified in beef cattle populations. However, BW records from an early stage of life were inappropriate early predictors for dairy cow health and productivity.     

Genetic parameters for digital dermatitis and correlations with locomotion, production, fertility traits, and longevity in Holstein-Friesian dairy cows

Heritability of digital dermatitis (DD) and correlations between DD and type traits related to legs and feet were estimated from a linear animal model. Data comprised 93,391 national type evaluation records of pedigreed first-lactation Holstein-Friesian cows that calved from 2002 through 2006. At the time of classification, cows were housed in different housing systems (i.e., cubicles, straw yards, slatted or loafing yards) and on pasture. The type traits evaluated were locomotion score (LOCO), rear legs side view (RLS), foot angle (FA), bone quality and leg and feet composite (L&F). In addition, cows were examined for DD lesions at classification. The relationships among these type traits, lifespan (LS), production (milk and fat), fertility (calving interval and 56-d nonreturn) and DD were examined by estimating the approximate genetic correlations from sire estimated breeding values. The study also evaluated the association between DD and the housing systems as well as the general conditions of the farm flooring where classification took place. In general, cows on pasture were less susceptible to DD than cows in other housing systems, whereas the association between DD and the flooring conditions was counterintuitive. Heritability estimate for DD was 0.011 on the 0/1 scale, which is equivalent to 0.029 on the assumed underlying normally distributed scale. Bone quality, LOCO, and L&F had moderate to high negative genetic correlations with DD, indicating that flatter, more refined bones, higher LOCO, and better L&F were associated with less incidence of DD. The genetic correlations between DD, RLS, and FA were not significantly different from zero. Digital dermatitis had moderate but negative genetic correlations with LS and milk and fat, suggesting that breeding for resistance to DD will result in an increase in both longevity and production. Cows affected with DD had a slightly shorter calving interval than healthy cows, an association found to be mediated through the reduced milk yield of these cows. Generally, the type traits included in this study had low genetic correlations with production and fertility traits whereas the associations between these traits and LS ranged from moderate to high. This indicates that good locomotion, straighter RLS, steeper FA, better L&F, and flatter, more refined bones are associated with increased longevity.     

Genetic parameters for milk urea nitrogen in relation to milk production traits

The aim of this study was to estimate genetic parameters for test-day milk urea nitrogen (MUN) and its relationships with milk production traits. Three test-day morning milk samples were collected from 1,953 Holstein-Friesian heifers located on 398 commercial herds in the Netherlands. Each sample was analyzed for somatic cell count, net energy concentration, MUN, and the percentage of fat, protein, and lactose. Genetic parameters were estimated using an animal model with covariates for days in milk and age at first calving, fixed effects for season of calving and effect of test or proven bull, and random effects for herd-test day, animal, permanent environment, and error. Coefficient of variation for MUN was 33%. Estimated heritability for MUN was 0.14. Phenotypic correlation of MUN with each of the milk production traits was low. The genetic correlation was close to zero for MUN and lactose percentage (−0.09); was moderately positive for MUN and net energy concentration of milk (0.19), fat yield (0.41), protein yield (0.38), lactose yield (0.22), and milk yield (0.24), and percentage of fat (0.18), and percentage of protein (0.27); and was high for MUN and somatic cell score (0.85). Herd-test day explained 58% of the variation in MUN, which suggests that management adjustments at herd-level can reduce MUN. This study shows that it is possible to influence MUN by herd practice and by genetic selection.     

Estimates of genetic parameters for Canadian Holstein female reproduction traits

Age at first insemination, days from calving to first insemination, number of services, first-service nonreturn rate to 56 d, days from first service to conception, calving ease, stillbirth, gestation length, and calf size of Canadian Holstein cows were jointly analyzed in a linear multiple-trait model. Traits covered a wide spectrum of aspects related to reproductive performance of dairy cows. Other frequently used fertility characteristics, like days open or calving intervals, could easily be derived from the analyzed traits. Data included 94,250 records in parities 1 to 6 on 53,158 cows from Ontario and Quebec, born in the years 1997 to 2002. Reproductive characteristics of heifers and cows were treated as different but genetically correlated traits that gave 16 total traits in the analysis. Repeated records for later parities were modeled with permanent environmental effects. Direct and maternal genetic effects were included in linear models for traits related to calving performance. Bayesian methods with Gibbs sampling were used to estimate covariance components of the model and respective genetic parameters. Estimates of heritabilities for fertility traits were low, from 3% for nonreturn rate in heifers to 13% for age at first service. Interval traits had higher heritabilities than binary or categorical traits. Service sire, sire of calf, and artificial insemination technician were important (relative to additive genetic) sources of variation for nonreturn rate and traits related to calving performance. Fertility traits in heifers and older cows were not the same genetically (genetic correlations in general were smaller than 0.9). Genetic correlations (both direct and maternal) among traits indicated that different traits measured different aspects of reproductive performance of a dairy cow. These traits could be used jointly in a fertility index to allow for selection for better fertility of dairy cattle.     

Effect of kappa-casein and beta-lactoglobulin loci on milk production traits and reproductive performance of Holstein cows

The effects of kappa-casein (kappa-CN) and beta-lactoglobulin (beta-LG) loci on milk production traits (milk, fat, protein, and lactose yield, fat, protein, and lactose content) and reproductive performance (gestation length, calving interval, age at first and second calving, number of services per conception) was estimated for 278 Holstein cows in the first 2 lactations. Genotypes of kappa-CN and beta-LG were determined by alkaline and acidic polyacrylamide gel electrophoresis. Milk production was recorded daily. Single-trait, mixed, linear models were used for the statistical analysis of the data. Results indicated that kappa-CN genotypes affected significantly protein yield and content (genotype AB > genotype AA). A tendency for increased milk and fat yield of animals having AB kappa-CN genotype was also found. Fat content and lactose yield and content were not affected. In the beta-LG system, significant differences were detected for milk yield (AB > AA), fat yield (BB and AB > AA), fat content (BB > AA and AB), and lactose yield (AB > AA). A tendency for higher protein yield was also observed (AB > AA). The beta-LG locus had no significant effect on protein and lactose content. No associations between polymorphisms at the kappa-CN locus and reproductive performance were found. There was a tendency, however, for cows with AB genotype to have older age at first and second calving. In the beta-LG system, cows with AA genotype had significantly shorter gestation length than did those with AB or BB genotype. No differences were detected between beta-LG polymorphisms for the other reproductive traits.     

Genetic relationships of lactose and freezing point with minerals and coagulation traits predicted from milk mid-infrared spectra in Holstein cows

The aim of the present study was to assess the relationships of lactose percentage (LP), lactose yield (LY), and freezing point (FRP) with minerals and coagulation properties predicted from mid-infrared spectra in bovine milk. To achieve this purpose, we analyzed 54,263 test-day records of 4,297 Holstein cows to compute (co)variance components with a linear repeatability animal model. Parity, stage of lactation, season of calving, and herd-test-date were included as fixed effects in the model, and additive genetic animal, within- and across-lactation permanent environment, and residual were included as random effects. Lactose percentage was more heritable (0.405 ± 0.027) than LY (0.121 ± 0.021) and FRP (0.132 ± 0.014). Heritabilities (± standard error) of predicted milk minerals varied from 0.375 ± 0.027 for Na to 0.531 ± 0.028 for P, and those of milk coagulation properties ranged from 0.348 ± 0.052 for rennet coagulation time to 0.430 ± 0.026 for curd firming time. Lactose percentage showed favorable (negative) genetic correlations with milk somatic cell score (SCS) and FRP, and it was almost uncorrelated with casein-related minerals (Ca and P) and coagulation properties. Moreover, LP was strongly correlated with Na (−0.783 ± 0.022), a mineral known to increase in the presence of intramammary infection (IMI) and high somatic cell count. Indeed, Na is the main osmotic replacer of lactose in mastitic milk when the blood–milk barrier is altered during IMI. Being strongly associated with milk yield, LY did not favorably correlate with coagulation properties, likely because of the negative correlation of this trait with protein and casein percentages. Milk FRP presented moderate and null genetic associations with Na and SCS, respectively. Results of the present study suggest that the moderate heritability of LP and its genetic correlations with IMI-related traits (Na and SCS) could be exploited for genetic selection against mastitis. Moreover, selection for LP would not impair milk coagulation characteristics or Ca and P content, which are important for cheesemaking.     

Detection of quantitative trait loci affecting milk production, health, and reproductive traits in Holstein cattle

We report putative quantitative trait loci affecting female fertility and milk production traits using the merged data from two research groups that conducted independent genome scans in Dairy Bull DNA Repository grandsire families to identify quantitative trait loci (QTL) affecting economically important traits. Six families used by both groups had been genotyped for 367 microsatellite markers covering 2713.5 cM of the cattle genome (90%), with an average spacing of 7.4 cM. Phenotypic traits included PTA for pregnancy rate and daughter deviations for milk, protein and fat yields, protein and fat percentages, somatic cell score, and productive life. Analysis of the merged dataset identified putative quantitative trait loci that were not detected in the separate studies, and the pregnancy rate PTA estimates that recently became available allowed detection of pregnancy rate QTL for the first time. Sixty-one putative significant marker effects were identified within families, and 13 were identified across families. Highly significant effects were found on chromosome 3 affecting fat percentage and protein yield, on chromosome 6 affecting protein and fat percentages, on chromosome 14 affecting fat percentage, on chromosome 18 affecting pregnancy rate, and on chromosome 20 affecting protein percentage. Within-family analysis detected putative QTL associated with pregnancy rate on six chromosomes, with the effect on chromosome 18 being the most significant statistically. These findings may help identify the most useful markers available for QTL detection and, eventually, for marker-assisted selection for improvement of these economically important traits.     

Estimation of quantitative trait loci parameters for milk production traits in German Holstein dairy cattle population

The main objective of this study was to estimate the proportion of total genetic variance attributed to a quantitative trait locus (QTL) on Bos taurus autosome 6 (BTA6) for milk production traits in the German Holstein dairy cattle population. The analyzed chromosomal region on BTA6 spanned approximately 70 cM, and contained 6 microsatellite markers. Milk production data were obtained from routine genetic evaluation for 4500 genotyped German Holstein bulls. Technical aspects related to the estimation of model parameters for a large data set from routine genotype recording were outlined. A fixed QTL model and a random QTL model were introduced to incorporate marker information into parameter estimation and genetic evaluation. Estimated QTL variances, expressed as the ratio of QTL to polygenic variances, were 0.04, 0.03, and 0.07 for milk yield; 0.06, 0.08, and 0.14 for fat yield; and 0.04, 0.04, and 0.11 for protein yield, in the first 3 parities, respectively. The estimated QTL positions, expressed as distances from the leftmost marker DIK82, were 18, 31, and 17 cM for milk yield; 25, 17, and 9 cM for fat yield; and 16, 30, and 17 cM for protein yield in the 3 respective parities. Because the data for the parameter estimation well represented the current population of active German Holstein bulls, the QTL parameter estimates have been used in routine marker-assisted genetic evaluation for German Holsteins.