Constructing the virtual Jing-Hang Grand Canal with onto-draw

Constructing virtual 3D historical scenes from literature and records is a very challenging problem due to the difficulty in incorporating different types of domain knowledge into the modeling system. The domain knowledge comes from different experts, including: architects, historians, rendering artists, user interface designers and computer engineers. In this paper we investigate the problem of automatically generating drawings of ancient scenes by ontologies extracted from these domains. We introduce a framework called onto-draw to generate semantic models of desired scenes by constructing hierarchical ontology concept domains. Inconsistencies among them are resolved via an iterative refinement algorithm. We implement the onto-draw based ontology design approach and inconsistency removal technique in the virtual Jing-Hang Grand Canal construction project (Chen et al., 2010) and achieve encouraging results.     

Investigating ontology development for engineering design support

Ontologies are now in widespread use as a means of formalizing domain knowledge in a way that makes it accessible, shareable and reusable. Nevertheless, to many, the nature and use of ontologies are unfamiliar. This paper takes a practical approach - through the use of example - to clarifying what ontologies are and how they might be useful in an important and representative phase of the engineering design process, that of design requirement development and capture.The paper consists of two parts. In the first part ontologies and their use are discussed, and a methodology for developing ontologies is explored. In the second part, three very different types of ontology are developed in accordance with the methodology. Each of the ontologies captures a different conceptual facet of the engineering design domain, described at a quite different level of abstraction than the others. The process of developing ontologies is illustrated in a practical way and the application of these ontologies for supporting the capture of the engineering design requirement is described as a means of demonstrating the general potential of ontologies.     

基于用户行为的启发式本体搜索机制

为了能够以较高的准确率搜索到用户所需要的领域本体,在分析本体搜索需求和研究用户搜索行为的基础上,提出了一种基于用户行为的启发式本体搜索机制,利用不同用户由于领域认知不同,输入的具有领域共性的搜索关键词不同,实现用户搜索关键词的启发式扩展和搜索匹配度的提高。实验表明,使用该方法执行本体搜索具有较高的准确率和召回率。     

DeMO: An Ontology for Discrete-event Modeling and Simulation

Several fields have created ontologies for their subdomains. For example, the biological sciences have developed extensive ontologies such as the Gene Ontology, which is considered a great success. Ontologies could provide similar advantages to the Modeling and Simulation community. They provide a way to establish common vocabularies and capture knowledge about a particular domain with community-wide agreement. Ontologies can support significantly improved (semantic) search and browsing, integration of heterogeneous information sources, and improved knowledge discovery capabilities. This paper discusses the design and development of an ontology for Modeling and Simulation called the Discrete-event Modeling Ontology (DeMO), and it presents prototype applications that demonstrate various uses and benefits that such an ontology may provide to the Modeling and Simulation community.     

A CBR system for injection mould design based on ontology: A case study

Case-based reasoning (CBR) often shows significant promise for improving the effectiveness of design support in mould design, which is a domain strong in practice but poor in theory. However, existing CBR systems lack semantic understanding, which is important for intelligent knowledge retrieval in design support system. This hinders the application of CBR in injection mould design. In order to develop an intelligent CBR system and meet the need of design support for injection mould design, this paper integrates ontology technology into a CBR system by constructing domain ontology as case-base with a new method, in which two means of acquisition are combined, one is acquiring ontology from existing ontologies, the other from established engineering knowledge resources, and proposing a new semantic retrieval method as the first grade case retrieval. Numerical measurement is also employed as the second grade case retrieval, which adopts various methods to calculate different types of attribute values. A case is executed to illustrate the use of proposed CBR system, then a lot of experiments are organized to evaluate its performance and the result shows that the proposed approach outperforms existing CBR systems.     

Onyx: A new Canvas-based tool for visualizing biomedical and health ontologies

Ontologies provide formal, machine-readable, and human-interpretable representations of domain knowledge. Therefore, ontologies have come into question with the development of Semantic Web technologies. People who want to use ontologies need an understanding of the ontology, but this understanding is very difficult to attain if the ontology user lacks the background knowledge necessary to comprehend the ontology or if the ontology is very large. Thus, software tools that facilitate the understanding of ontologies are needed. Ontology visualization is an important research area because visualization can help in the development, exploration, verification, and comprehension of ontologies. This paper introduces the design of a new ontology visualization tool, which differs from traditional visualization tools by providing important metrics and analytics about ontology concepts and warning the ontology developer about potential ontology design errors. The tool, called Onyx, also has advantages in terms of speed and readability. Thus, Onyx offers a suitable environment for the representation of large ontologies, especially those used in biomedical and health information systems and those that contain many terms. It is clear that these additional functionalities will increase the value of traditional ontology visualization tools during ontology exploration and evaluation.     

A semantic metrics suite for evaluating modular ontologies

Ontologies, which are formal representations of knowledge within a domain, can be used for designing and sharing conceptual models of enterprises information for the purpose of enhancing understanding, communication and interoperability. For representing a body of knowledge, different ontologies may be designed. Recently, designing ontologies in a modular manner has emerged for achieving better reasoning performance, more efficient ontology management and change handling. One of the important challenges in the employment of ontologies and modular ontologies in modeling information within enterprises is the evaluation of the suitability of an ontology for a domain and the performance of inference operations over it. In this paper, we present a set of semantic metrics for evaluating ontologies and modular ontologies. These metrics measure cohesion and coupling of ontologies, which are two important notions in the process of assessing ontologies for enterprise modeling. The proposed metrics are based on semantic-based definitions of relativeness, and dependencies between local symbols, and also between local and external symbols of ontologies. Based on these semantic definitions, not only the explicitly asserted knowledge in ontologies but also the implied knowledge, which is derived through inference, is considered for the sake of ontology assessment. We present several empirical case studies for investigating the correlation between the proposed metrics and reasoning performance, which is an important issue in applicability of employing ontologies in real-world information systems.     

Automatic extraction of OWL ontologies from UML class diagrams: a semantics-preserving approach

Full implementation of the Semantic Web requires widespread availability of OWL ontologies. Manual ontology development using current OWL editors remains a tedious and cumbersome task that requires significant understanding of the new ontology language and can easily result in a knowledge acquisition bottleneck. On the other hand, abundant domain knowledge has been specified by existing database schemata such as UML class diagrams. Thus developing an automatic tool for extracting OWL ontologies from existing UML class diagrams is helpful to Web ontology development. In this paper we propose an automatic, semantics-preserving approach for extracting OWL ontologies from existing UML class diagrams. This approach establishes a precise conceptual correspondence between UML and OWL through a semantics-preserving schema translation algorithm. The experiments with our implemented prototype tool, UML2OWL, show that the proposed approach is effective and a fully automatic ontology extraction is achievable. The proposed approach and tool will facilitate the development of Web ontologies and the realization of semantic interoperations between existing Web database applications and the Semantic Web.     

Experimentation with local consensus ontologies with implications for automated service composition

Agent technologies represent a promising approach for the integration of interorganizational capabilities across distributed, networked environments. However, knowledge sharing interoperability problems can arise when agents incorporating differing ontologies try to synchronize their internal information. Moreover, in practice, agents may not have a common or global consensus ontology that will facilitate knowledge sharing and integration of functional capabilities. We propose a method to enable agents to develop a local consensus ontology during operation time as needed. By identifying similarities in the ontologies of their peer agents, a set of agents can discover new concepts/relations and integrate them into a local consensus ontology on demand. We evaluate this method, both syntactically and semantically, when forming local consensus ontologies with and without the use of a lexical database. We also report on the effects when several factors, such as the similarity measure, the relation search level depth, and the merge order, are varied. Finally, experimenting in the domain of agent-supported Web service composition, we demonstrate how our method allows us to successfully autonomously form service-oriented local consensus ontologies.     

Using OWL-VisMod through a decision-making process for reusing OWL ontologies

Knowledge representation (KR) can be defined as a set of ontological commitments, provided with the capabilities of performing inference. The knowledge can be represented using an ontology, which provides a shared insight into a certain domain. The use of ontologies to represent knowledge also allows interoperation among knowledge-based systems. The process of building ontologies can be tedious and sometimes exhaustive. A possible solution in order to avoid this problem would be to reuse the ontologies previously created by others. This paper describes a case study of reusability using OWL-VisMod, a tool designed for developing ontological engineering based on visual conceptual modelling for OWL ontologies. A workflow performed with OWL-VisMod is described; including a decision-making process in order to decide whether or not it could be desirable to reuse an ontology, according to the requirements of a certain project.     

Relating ontologies with a fuzzy information model

More people than ever before have access to information with the World Wide Web; information volume and number of users both continue to expand. Traditional search methods based on keywords are not effective, resulting in large lists of documents, many of which unrelated to users’ needs. One way to improve information retrieval is to associate meaning to users’ queries by using ontologies, knowledge bases that encode a set of concepts about one domain and their relationships. Encoding a knowledge base using one single ontology is usual, but a document collection can deal with different domains, each organized into an ontology. This work presents a novel way to represent and organize knowledge, from distinct domains, using multiple ontologies that can be related. The model allows the ontologies, as well as the relationships between concepts from distinct ontologies, to be represented independently. Additionally, fuzzy set theory techniques are employed to deal with knowledge subjectivity and uncertainty. This approach to organize knowledge and an associated query expansion method are integrated into a fuzzy model for information retrieval based on multi-related ontologies. The performance of a search engine using this model is compared with another fuzzy-based approach for information retrieval, and with the Apache Lucene search engine. Experimental results show that this model improves precision and recall measures.     

Ontologies for conceptual modeling: their creation, use, and management

Although ontologies have been proposed as an important and natural means of representing real world knowledge for the development of database designs, most ontology creation is not carried out systematically. To be truly useful, a repository of ontologies, organized by application domain is needed, along with procedures for creating and integrating ontologies into database design methodologies. This research proposes a methodology for creating and managing domain ontologies. An architecture for an ontology management system is presented and implemented in a prototype. Empirical validation of the prototype demonstrates the effectiveness of the research.     

Thesaurus or Logical Ontology,Which One Do We Need for Text Mining?

Ontologies are recognised as important tools, not only for effective and efficient information sharing, but also for information extraction and text mining. In the biomedical domain, the need for a common ontology for information sharing has long been recognised, and several ontologies are now widely used. However, there is confusion among researchers concerning the type of ontology that is needed for text mining , and how it can be used for effective knowledge management, sharing, and integration in biomedicine. We argue that there are several different ways to define an ontology and that, while the logical view is popular for some applications, it may be neither possible nor necessary for text mining. We propose a text-centered approach for knowledge sharing, as an alternative to formal ontologies. We argue that a thesaurus (i.e. an organised collection of terms enriched with relations) is more useful for text mining applications than formal ontologies.     

BiOSS: A system for biomedical ontology selection

In biomedical informatics, ontologies are considered a key technology for annotating, retrieving and sharing the huge volume of publicly available data. Due to the increasing amount, complexity and variety of existing biomedical ontologies, choosing the ones to be used in a semantic annotation problem or to design a specific application is a difficult task. As a consequence, the design of approaches and tools addressed to facilitate the selection of biomedical ontologies is becoming a priority. In this paper we present BiOSS, a novel system for the selection of biomedical ontologies. BiOSS evaluates the adequacy of an ontology to a given domain according to three different criteria: (1) the extent to which the ontology covers the domain; (2) the semantic richness of the ontology in the domain; (3) the popularity of the ontology in the biomedical community. BiOSS has been applied to 5 representative problems of ontology selection. It also has been compared to existing methods and tools. Results are promising and show the usefulness of BiOSS to solve real-world ontology selection problems. BiOSS is openly available both as a web tool and a web service.     

Hybrid Measure of Agreement and Expertise for Ontology Matching in Lieu of a Reference Ontology

Ontologies have been widely used as a knowledge representation framework, and numerous methods have been put forth to match ontologies. It is well known that ontology matchers behave differently in various domains, and it is a challenge to predict or characterize their behavior. Herein, a hybrid expertise‐agreement aggregation strategy is proposed. Although others rely on the existence of a reference ontology, this typically does not exist in the real world. In this article, the fuzzy integral (FI) is used to aggregate multiple ontology matchers in lieu of a reference ontology. Specifically, we present a measure of expertise and fuse it with our previous agreement measure that is motivated by crowd sourcing to improve recall. This way, any available domain knowledge, in terms of partial ordering of a subset of inputs, can be included in the decision‐making process. By adding the domain knowledge to the agreement model, we are able to reach the upmost performance. Preliminary results demonstrate the robustness of our approach across domains. Sensitivity analysis is also provided, which shows the limits to which extreme destructive expertise affects system performance.     

Toward intelligent data warehouse mining: An ontology-integrated approach for multi-dimensional association mining

A data warehouse is an important decision support system with cleaned and integrated data for knowledge discovery and data mining systems. In reality, the data warehouse mining system has provided many applicable solutions in industries, yet there are still many problems causing users extra problems in discovering knowledge or even failing to obtain the real and useful knowledge they need. To improve the overall data warehouse mining process, we present an intelligent data warehouse mining approach incorporated with schema ontology, schema constraint ontology, domain ontology and user preference ontology. The structures of these ontologies are illustrated and how they benefit the mining process is also demonstrated by examples utilizing rule mining. Finally, we present a prototype multidimensional association mining system, which with intelligent assistance through the support of the ontologies, can help users build useful data mining models, prevent ineffective pattern generation, discover concept extended rules, and provide an active knowledge re-discovering mechanism.     

Mining Bayesian networks out of ontologies

Probabilistic reasoning is an essential feature when dealing with many application domains. Starting with the idea that ontologies are the right way to formalize domain knowledge and that Bayesian networks are the right tool for probabilistic reasoning, we propose an approach for extracting a Bayesian network from a populated ontology and for reasoning over it. The paper presents the theory behind the approach, its design and examples of its use.     

A methodology for constructing of philosophy ontology based on philosophical texts

An ontology is a crucial factor for the success of the Semantic Web and other knowledge-based systems in terms of share and reuse of domain knowledge. However, there are a few concrete ontologies within actual knowledge domains including learning domains. In this paper, we develop an ontology which is an explicit formal specification of concepts and semantic relations among them in philosophy. We call it a philosophy ontology. Our philosophy is a formal specification of philosophical knowledge including knowledge of contents of classical texts of philosophy. We propose a methodology, which consists of detailed guidelines and templates, for constructing text-based ontology. Our methodology consists of 3 major steps and 14 minor steps. To implement the philosophy ontology, we develop an ontology management system based on Topic Maps. Our system includes a semi-automatic translator for creating Topic Map documents from the output of conceptualization steps and other tools to construct, store, retrieve ontologies based on Topic Maps. Our methodology and tools can be applied to other learning domain ontologies, such as history, literature, arts, and music.