A snake‐based approach to automated segmentation of tongue image using polar edge detector

Tongue diagnosis, one of the most important diagnosis methods of Traditional Chinese Medicine, is very competitive as a candidate of remote diagnosis method because of its simplicity and noninvasiveness. Recently, considerable research interests have been given to the development of automated tongue segmentation technologies, which is difficult due to the complexity of pathological tongue, variance of tongue shape, and interference of the lips. In this paper, we propose a novel automated tongue segmentation method via combining polar edge detector and active contour model (ACM) technique. First, a polar edge detector is presented to effectively extract the edge of the tongue body. Then we design an edge filtering scheme to avoid the adverse interference from the nontongue boundary. After edge filtering, a local adaptive edge bi‐thresholding algorithm is introduced to perform the edge binarization. Finally, a heuristic initialization and an ACM are proposed to segment the tongue body from the image. The experimental results demonstrate that the proposed method can segment the tongue body accurately and effectively. A quantitative evaluation on 200 images indicates that the normalized mean distance to the closest point is 0.48%, and the average true positive percent of our method is 97.1%. © 2007 Wiley Periodicals, Inc. Int J Imaging Syst Technol, 16, 103–112, 2006.     

Brain segmentation in magnetic resonance human head scans using multi-seeded region growing

This paper presents a skull stripping method to segment the brain from MRI human head scans using multi-seeded region growing technique. The proposed method has two stages. In Stage-1, the brain in the middle slice is segmented, the brains in the remaining slices are segmented in Stage-2. In each stage, the proposed method is required to identify the rough brain mask. The fine brain region in the rough brain mask is segmented using multi-seeded region growing approach. The proposed method uses multiple seed points which are selected automatically based on the intensity profile of grey matter (GM), white matter (WM) and cerebrospinal fluid (CSF) of the brain image. The proposed brain segmentation method using multi-seeded region growing (BSMRG) was validated using 100 volumes of T1, T2 and PD-weighted MR brain images obtained from Internet Brain Segmentation Repository (IBSR), LONI and Whole Brain Atlas (WBA). The best Dice (D) value of 0·971 and Jaccard (J) value of 0·944 were recorded by the proposed BSMRG method on IBSR dataset. For LONI dataset, the best values of D?=?0·979 and J?=?0·960 were obtained for the sagittal oriented images by the proposed method. The performance consistency of the proposed method was tested on the brain images of all types and orientation and have and produced better and stable results than the existing methods Brain Extraction Tool (BET), Brain Surface Extraction (BSE), Watershed Algorithm (WAT), Hybrid Watershed Algorithm (HWA) and Skull Stripping using Graph Cuts (GCUT).     

Fuzzy generalized fast marching method for 3D segmentation of brain structures

The aim of this work is to develop a new model for segmentation of brain structures in medical brain MR images. Brain segmentation is a challenging task due to the complex anatomical structure of brain structures as well as intensity nonuniformity, partial volume effects and noise. Generally the structures of interest are of relatively complicated size and have significant shape variations, the structures boundaries may be blurry or even missing, and the surrounding background is full of irrelevant edges. Segmentation methods based on fuzzy models have been developed to overcome the uncertainty caused by these effects. In this study, we propose a robust and accurate brain structures segmentation method based on a combination of fuzzy model and deformable model. Our method breaks up into two great parts. Initially, a preliminary stage allows to construct the various information maps, in particular a fuzzy map, used as a principal information source, constructed using the Fuzzy C‐means method (FCM). Then, a deformable model implemented with the generalized fast marching method (GFMM), evolves toward the structure to be segmented, under the action of a normal force defined from these information maps. In this sense, we used a powerful evolution function based on a fuzzy model, adapted for brain structures. Two extensions of our general method are presented in this work. The first extension concerns the addition of an edge map to the fuzzy model and the use of some rules adapted to the segmentation process. The second extension consists of the use of several models evolving simultaneously to segment several structures. Extensive experiments are conducted on both simulated and real brain MRI datasets. Our proposed approach shows promising and achieves significant improvements with respect to several state‐of‐the‐art methods and with the three practical segmentation techniques widely used in neuroimaging studies, namely SPM, FSL, and Freesurfer.     

Estimating intravoxel fiber architecture using constrained compressed sensing combined with multitensor adaptive smoothing

In diffusion magnetic resonance imaging (dMRI), the accuracy of fiber tracking and analysis depends directly on that of intravoxel fiber architecture reconstruction. Several methods have been proposed that estimate intravoxel fiber architecture using low angular resolution acquisitions owing to their shorter acquisition time and relatively low b‐values. But these methods are highly sensitive to noise. We propose an approach to estimating intravoxel fiber architecture in low angular resolution dMRI. The method consists in using a constrained compressed sensing (CCS) method, also known as crossing fiber angular resolution of intravoxel architecture (CFARI) technique, in combination with multitensor adaptive smoothing in which a diffusion‐weighted (DW) image smoothing scheme is constructed according to the properties of the multitensor field estimated using CFARI. The results on synthetic, physical phantom and real brain DW images show that the proposed method is able to better resolve fiber architectures while correctly preserving image edge information, which provides a new tool for investigating the microstructures of biological tissues and for fiber tractography. © 2015 Wiley Periodicals, Inc. Int J Imaging Syst Technol, 25, 285–296, 2015     

Three-dimensional CAD model reconstruction from image data of computer tomography

Three-dimensional (3D) shape reconstruction from 2D image data has been receiving extensive attention in medical engineering. It can enhance accurate diagnosis of the disease from medical images of computer tomography (CT) and magnetic resonance imaging (MRI). An algorithm based on reverse engineering technique was proposed in this work for 3D surface reconstruction of CT images. Several image processing techniques were applied first to detect the 2D contour of the object for each of the CT images. A surface lofting approach was then employed to fit the 2D contours into a 3D surface model. A brain example was presented to demonstrate the feasibility of the proposed method. © 1999 John Wiley & Sons, Inc. Int J Imaging Syst Technol 10, 328–338, 1999     

Brain tumor segmentation using a deep Shuffled-YOLO network

Brain tumor is an anomalous proliferation of cells in the brain that can evolve to malignant and benign tumors. Currently, segmentation of brain tumor is the most important surgical and pharmaceutical procedures. However, manually segmenting brain tumors is hard because it is hard to find erratically shaped tumors with only one modality; the MRI modalities are integrated to provide multi-modal images with data that can be utilized to segment tumors. The recent developments in machine learning and the accessibility of medical diagnostic imaging have made it possible to tackle the challenges of segmenting brain tumors with deep neural networks. In this work, a novel Shuffled-YOLO network has been proposed for segmenting brain tumors from multimodal MRI images. Initially, the scalable range-based adaptive bilateral filer (SCRAB) pre-processing technique was used to eliminate the noise artifacts from MRI while preserving the edges. In the segmentation phase, we propose a novel deep Shuffled-YOLO architecture for segmenting the internal tumor structures that include non-enhancing, edema, necrosis, and enhancing tumors from the multi-modality MRI sequences. The experimental fallouts reveal that the proposed Shuffled-YOLO network achieves a better accuracy range of 98.07% for BraTS 2020 and 97.04% for BraTS 2019 with very minimal computational complexity compared to the state-of-the-art models.     

Deep learning and machine learning-based early survival predictions of glioblastoma patients using pre-operative three-dimensional brain magnetic resonance imaging modalities

To propose and implement an automated machine learning (ML) based methodology to predict the overall survival of glioblastoma multiforme (GBM) patients. In the proposed methodology, we used deep learning (DL) based 3D U-shaped Convolutional Neural Network inspired encoder-decoder architecture to segment the brain tumor. Further, feature extraction was performed on these segmented and raw magnetic resonance imaging (MRI) scans using a pre-trained 2D residual neural network. The dimension-reduced principal components were integrated with clinical data and the handcrafted features of tumor subregions to compare the performance of regression-based automated ML techniques. Through the proposed methodology, we achieved the mean squared error (MSE) of 87 067.328, median squared error of 30 915.66, and a SpearmanR correlation of 0.326 for survival prediction (SP) with the validation set of Multimodal Brain Tumor Segmentation 2020 dataset. These results made the MSE far better than the existing automated techniques for the same patients. Automated SP of GBM patients is a crucial topic with its relevance in clinical use. The results proved that DL-based feature extraction using 2D pre-trained networks is better than many heavily trained 3D and 2D prediction models from scratch. The ensembled approach has produced better results than single models. The most crucial feature affecting GBM patients' survival is the patient's age, as per the feature importance plots presented in this work. The most critical MRI modality for SP of GBM patients is the T2 fluid attenuated inversion recovery, as evident from the feature importance plots.     

Rician noise removal in magnitude MRI images using efficient anisotropic diffusion filtering

In this article, a new methodology for denoising of Rician noise in Magnetic Resonance Images (MRI) is presented. MRI imaging creates a distinctive view into the interior of a human body and has become an essential tool of clinical diagnosis. However, Rician noise is a type of artifact inherent to the acquisition process of the magnitude MRI image, making diagnosis difficult. We proposed a moment‐based Rician noise reduction technique in anisotropic diffusion filtering. We extend the work of the classical anisotropic diffusion filter and have customized it to remove Rician noise in the magnitude MRI image in 3D domain space. Our proposed scheme shows better results against various quality measures in terms of noise removal and edge preservation while retaining fine textures.     

Multiclassifier for severity-level categorization of glioma tumors using multimodal magnetic resonance imaging brain images

Brain tumor segmentation and classification is a crucial challenge in diagnosing, planning, and treating brain tumors. This article proposes an automatic method that categorizes the severity level of the tumors to render an effective diagnosis. The proposed fractional Jaya optimizer-deep convolutional neural network undergoes the severity classification based on the features obtained from the segments of the magnetic resonance imaging (MRI) images. The segments are obtained using the particle swarm optimization that ensures the optimal selection of the segments from the MRI image and yields the core tumor and the edema tumor regions. The experimentation using the BRATS database reveals that the proposed method acquired a maximal accuracy, specificity, and sensitivity of 0.9414, 0.9429, and 0.9708, respectively.     

Fully automatic method for segmentation of brain tumor from multimodal magnetic resonance images using wavelet transformation and clustering technique

Fully automatic brain tumor segmentation is one of the critical tasks in magnetic resonance imaging (MRI) images. This proposed work is aimed to develop an automatic method for brain tumor segmentation process by wavelet transformation and clustering technique. The proposed method using discrete wavelet transform (DWT) for pre‐ and post‐processing, fuzzy c‐means (FCM) for brain tissues segmentation. Initially, MRI images are preprocessed by DWT to sharpen the images and enhance the tumor region. It assists to quicken the FCM clustering technique and classified into four major classes: gray matter (GM), white matter (WM), cerebrospinal fluid (CSF), and background (BG). Then check the abnormality detection using Fuzzy symmetric measure for GM, WM, and CSF classes. Finally, DWT method is applied in segmented abnormal region of images respectively and extracts the tumor portion. The proposed method used 30 multimodal MRI training datasets from BraTS2012 database. Several quantitative measures were calculated and compared with the existing. The proposed method yielded the mean value of similarity index as 0.73 for complete tumor, 0.53 for core tumor, and 0.35 for enhancing tumor. The proposed method gives better results than the existing challenging methods over the publicly available training dataset from MICCAI multimodal brain tumor segmentation challenge and a minimum processing time for tumor segmentation. © 2016 Wiley Periodicals, Inc. Int J Imaging Syst Technol, 26, 305–314, 2016     

Dual‐pathway DenseNets with fully lateral connections for multimodal brain tumor segmentation

Multimodal medical image data provide different structured and functional information, which helps segment brain tumor and gets a reliable and accurate diagnosis. Segmenting brain tumors in magnetic resonance imaging (MRI) is a challenging task because brain tumors can be at any location with changeable shape and size. Existing deep neural networks for brain tumor segmentation use few connections to fuse multilevel information. To make use of multilevel information from multimodal MRIs, we propose dual‐pathway DenseNets with fully lateral connections (DP‐DenseNets), a three‐dimensional (3D) fully convolutional neural network that uses dense connectivity to construct dual‐pathway architecture to multimodal brain tumor segmentation problem. Each two similar imaging modalities have a pathway, for one thing, the bottom‐up pathway with dense connectivity is developed for extracting features; another, the top‐down pathway concatenates the features of the bottom‐up pathway in all layers. Dual pathways with different loss functions and fully lateral connectivity from the bottom‐up pathway to the top‐down pathway provide an abundant combination of different levels of features. Comparing to these fusion schemes such as input‐level fusion and later‐level fusion, this architecture leverages semantics from low to high levels, which is provided by fully lateral connectivity. Our model is evaluated on the dataset from Brain Tumor Segmentation Challenge 2017 (BRATS 2017), and the experiments show that our method achieves better performance than other 3D networks.     

Computer aided diagnosis of brain abnormalities using texture analysis of MRI images

The drive of this study is to develop a robust system. A method to classify brain magnetic resonance imaging (MRI) image into brain-related disease groups and tumor types has been proposed. The proposed method employed Gabor texture, statistical features, and support vector machine. Brain MRI images have been classified into normal, cerebrovascular, degenerative, inflammatory, and neoplastic. The proposed system has been trained on a complete dataset of Brain Atlas-Harvard Medical School. Further, to achieve robustness, a dataset developed locally has been used. Extraordinary results on different orientations, sequences of both of these datasets as per accuracy (up to 99.6%), sensitivity (up to 100%), specificity (up to 100%), precision (up to 100%), and AUC value (up to 1.0) have been achieved. The tumorous slices are further classified into primary or secondary tumor as well as their further types as glioma, sarcoma, meningioma, bronchogenic carcinoma, and adenocarcinoma, which could not be possible to determine without biopsy, otherwise.     

The spatial statistics of structural magnetic resonance images: application to post-acquisition quality assessment of brain MRI images

This report describes a new quality evaluation method for structural magnetic resonance images (MRI) of the brain. Pixels in MRI images are regarded as regionalized random variables that exhibit distinct and organized geographic patterns. We extract geo-spatial local entropy features and build three separate Gaussian distributed quality models upon them using 250 brain MRI images of different subjects. The MRI images were provided by Alzheimer's disease neuroimaging initiative (ADNI). Image quality of a test image is predicted in a three-step process. In the first step, three separate geo-spatial feature vectors are extracted. The second step standardizes each quality model using corresponding geo-spatial feature vector extracted from the test image. The third step computes image quality by transforming the standardized score to probability. The proposed method was evaluated on images without perceived distortion and images degraded by different levels of motion blur and Rician noise as well as images with different configurations of bias fields. Based on the performance evaluation, our proposed method will be suitable for use in the field of clinical research where quality evaluation is required for the brain MRI images acquired from different MRI scanners and different clinical trial sites before they are fed into automated image processing and image analysis systems.     

Detection and segmentation of cervical cell cytoplast and nucleus

This article aims to develop a method for the detection and segmentation of a cytoplast and nucleus from a cervix smear image. First, the technique of equalization method with Gaussian filter is adopted to eliminate noise in the image. Second, a new edge enhancement technique is proposed to work out the coarseness of each pixel, which is later used as a determining characteristic of reinforced object images. A two‐group object enhancement technique is then used to reinforce this object according to rough pixels. Third, the proposed detector enhances the gradients of the edges of the cytoplast and nucleus while suppressing the noise gradients, and then specifies the pixels with higher gradients as possible edge pixels. Finally, it picks out the two longest closed curves constructed by part of the edge pixels. Detection and segmentation performance of the proposed method is later compared with seed region growing feature extraction and level set method using 10 cervix smear images as example. Besides comparing the contour segment of the cytoplast and nucleus obtained by using different methods, we also compare the quality of the segmentation results. Experimental results show that the proposed detector demonstrates an impressive performance. © 2009 Wiley Periodicals, Inc. Int J Imaging Syst Technol, 19, 260–270, 2009     

A rapid automatic brain tumor detection method for MRI images using modified minimum error thresholding technique

This proposed work is aimed to develop a rapid automatic method to detect the brain tumor from T2‐weighted MRI brain images using the principle of modified minimum error thresholding (MET) method. Initially, modified MET method is applied to produce well segmented and sub‐structural clarity for MRI brain images. Further, using FCM clustering the appearance of tumor area is refined. The obtained results are compared with corresponding ground truth images. The quantitative measures of results were compared with the results of those conventional methods using the metrics predictive accuracy (PA), dice coefficient (DC), and processing time. The PA and DC values of the proposed method attained maximum value and processing time is minimum while compared to conventional FCM and k‐means clustering techniques. This proposed method is more efficient and faster than the existing segmentation methods in detecting the tumor region from T2‐weighted MRI brain images. © 2015 Wiley Periodicals, Inc. Int J Imaging Syst Technol, 25, 77–85, 2015     

An Efficient False-Positive Reduction System for Cerebral Microbleeds Detection

Cerebral Microbleeds (CMBs) are microhemorrhages caused by certain abnormalities of brain vessels. CMBs can be found in people with Traumatic Brain Injury (TBI), Alzheimer’s disease, and in old individuals having a brain injury. Current research reveals that CMBs can be highly dangerous for individuals having dementia and stroke. The CMBs seriously impact individuals’ life which makes it crucial to recognize the CMBs in its initial phase to stop deterioration and to assist individuals to have a normal life. The existing work report good results but often ignores false-positive’s perspective for this research area. In this paper, an efficient approach is presented to detect CMBs from the Susceptibility Weighted Images (SWI). The proposed framework consists of four main phases (i) making clusters of brain Magnetic Resonance Imaging (MRI) using k-mean classifier (ii) reduce false positives for better classification results (iii) discriminative feature extraction specific to CMBs (iv) classification using a five layers convolutional neural network (CNN). The proposed method is evaluated on a public dataset available for 20 subjects. The proposed system shows an accuracy of 98.9% and a 1.1% false-positive rate value. The results show the superiority of the proposed work as compared to existing states of the art methods.     

An efficient automated methodology for detecting and segmenting the ischemic stroke in brain MRI images

Brain tumor and brain stroke are two important causes of death in and around the world. The abnormalities in brain cell leads to brain stroke and obstruction in blood flow to brain cells leads to brain stroke. In this article, a computer aided automatic methodology is proposed to detect and segment ischemic stroke in brain MRI images using Adaptive Neuro Fuzzy Inference (ANFIS) classifier. The proposed method consists of preprocessing, feature extraction and classification. The brain image is enhanced using Heuristic histogram equalization technique. Then, texture and morphological features are extracted from the preprocessed image. These features are optimized using Genetic Algorithm and trained and classified using ANFIS classifier. The performance of the proposed ischemic stroke detection system is analyzed in terms of sensitivity, specificity, accuracy, positive predictive value, negative predictive value, and Mathew's correlation coefficient.     

Interest points localization for brain image using landmark‐annotated atlas

The localization of clinically important points in brain images is crucial for many neurological studies. Conventional manual landmark annotation requires expertise and is often time‐consuming. In this work, we propose an automatic approach for interest point localization in brain image using landmark‐annotated atlas (LAA). The landmark detection procedure is formulated as a problem of finding corresponding points of the atlas. The LAA is constructed from a set of brain images with clinically relevant landmarks annotated. It provides not only the spatial information of the interest points of the brain but also the optimal features for landmark detection through a learning process. Evaluation was performed on 3D magnetic resonance (MR) data using cross‐validation. Obtained results demonstrate that the proposed method achieves the accuracy of ～ 2 mm, which outperforms the traditional methods such as block matching technique and direct image registration. © 2012 Wiley Periodicals, Inc. Int J Imaging Syst Technol, 22, 145–152, 2012     

Boundary-based object segmentation in X-ray imaging using spiral search

In this paper, we propose a boundary-based method for object segmentation by using only the edge information. The proposed method is especially applied to object segmentation of dangerous firearms and knives in the X-ray images of baggage, where no colour or texture features are available to describe the target object. The Canny edge detector is used to extract edge points from the X-ray image. These edges have cluttered backgrounds and may be discontinuous. A fast spiral search is proposed to connect neighbouring points, either continuous or discontinuous, and form closed contours for individual objects. The distance and direction angle of an edge point in the search process can be obtained from a pre-constructed spiral look-up-table. No computation of the geometric features is required. Thus, the search of the coherent neighbouring points for edge connection is very fast. The experimental results have shown that the proposed method can effectively and efficiently segment a variety of firearms and knives of different shapes and sizes in the X-ray images of baggage.     

Real‐time ballistocardiographic artifact reduction using the k‐teager energy operator detector and multi‐channel referenced adaptive noise cancelling

The simultaneous electroencephalogram (EEG) and functional magnetic resonance imaging (fMRI) recording technique has recently received considerable attention and has been used in many studies on cognition and neurological disease. EEG‐fMRI simultaneous recording has the advantage of enabling the monitoring of brain activity with both high temporal resolution and high spatial resolution in real time. The successful removal of the ballistocardiographic (BCG) artifact from the EEG signal recorded during an MRI is an important prerequisite for real‐time EEG‐fMRI joint analysis. We have developed a new framework dedicated to BCG artifact removal in real‐time. This framework includes a new real‐time R‐peak detection method combining a k‐Teager energy operator, a thresholding detector, and a correlation detector, as well as a real‐time BCG artifact reduction procedure combining average artifact template subtraction and a new multi‐channel referenced adaptive noise cancelling method. Our results demonstrate that this new framework is efficient in the real‐time removal of the BCG artifact. The multi‐channel adaptive noise cancellation (mANC) method performs better than the traditional ANC method in eliminating the BCG residual artifact. In addition, the computational speed of the mANC method fulfills the requirements of real‐time EEG‐fMRI analysis. © 2016 Wiley Periodicals, Inc. Int J Imaging Syst Technol, 26, 209–215, 2016