Order-k voronoi diagrams of sites with additive weights in the plane

It is shown that the order-k Voronoi diagram of n sites with additive weights in the plane has at most (4k?2)(n?k) vertices, (6k?3)(n?k) edges, and (2k?1)(n?itk) + 1 regions. These bounds are approximately the same as the ones known for unweighted order-k Voronoi diagrams. Furthermore, tight upper bounds on the number of edges and vertices are given for the case that every weighted site has a nonempty region in the order-1 diagram. The proof is based on a new algorithm for the construction of these diagrams which generalizes a plane-sweep algorithm for order-1 diagrams developed by Steven Fortune. The new algorithm has time-complexityO(k ² n logn) and space-complexityO(kn). It is the only nontrivial algorithm known for constructing order-kc Voronoi diagrams of sites withadditive weights. It is fairly simple and of practical interest also in the special case of unweighted sites.     

A sweepline algorithm for Euclidean Voronoi diagram of circles

Presented in this paper is a sweepline algorithm to compute the Voronoi diagram of a set of circles in a two-dimensional Euclidean space. The radii of the circles are non-negative and not necessarily equal. It is allowed that circles intersect each other, and a circle contains others.The proposed algorithm constructs the correct Voronoi diagram as a sweepline moves on the plane from top to bottom. While moving on the plane, the sweepline stops only at certain event points where the topology changes occur for the Voronoi diagram being constructed.The worst-case time complexity of the proposed algorithm is O((n+m)log n), where n is the number of input circles, and m is the number of intersection points among circles. As m can be O(n²), the presented algorithm is optimal with O(n² log n) worst-case time complexity.     

Order-k voronoi diagrams of sites with additive weights in the plane

It is shown that the order-k Voronoi diagram of n sites with additive weights in the plane has at most (4k–2)(n–k) vertices, (6k–3)(n–k) edges, and (2k–1)(n–itk) + 1 regions. These bounds are approximately the same as the ones known for unweighted order-k Voronoi diagrams. Furthermore, tight upper bounds on the number of edges and vertices are given for the case that every weighted site has a nonempty region in the order-1 diagram. The proof is based on a new algorithm for the construction of these diagrams which generalizes a plane-sweep algorithm for order-1 diagrams developed by Steven Fortune. The new algorithm has time-complexityO(k ² n logn) and space-complexityO(kn). It is the only nontrivial algorithm known for constructing order-kc Voronoi diagrams of sites withadditive weights. It is fairly simple and of practical interest also in the special case of unweighted sites.Work on this paper has been supported by Amoco Fnd. Fac. Dev. Comput. Sci. 1-6-44862.     

A Nonoblivious Bus Access Scheme Yields an Optimal Partial Sorting Algorithm

This paper focuses on a linear array ofnnodes withmultiple shared busesas a practically feasible model for parallel processing. Letkbe the number of shared buses. A nonoblivious scheme for mutually exclusive access tokshared buses is proposed. The effectiveness of the scheme is demonstrated by proposing an algorithm for solving a partial sort problem, which can be efficiently executed on the array according to the scheme. Thepartial sort problemwith parametermis the problem of sorting a subsetS′ of a given setS, whereS′ is the set of elements less than or equal to themth smallest element inS. Ifm= 1, then it is solved by an algorithm for finding the smallest element inS, and ifm=n, then it is solved by adapting normal sorting algorithm. The time complexity (9m/k) log₂log₂n+ 3.467[formula]+O(m/k+ (n/k)^1/4) of the proposed algorithm matches a lower bound Ω ([formula]+m/k) with respect tonandk, ifmis small enough to satisfym=O([formula]/log logn).     

有Mate-Pairs的个体单体型MSR问题的参数化算法

个体单体型MSR(minimum SNP removal)问题是指如何利用个体的基因测序片断数据去掉最少的SNP(single-nucleotide polymorphisms)位点,以确定该个体单体型的计算问题.对此问题,Bafna等人提出了时间复杂度为O(2^kn²m)的算法,其中,m为DNA片断总数,n为SNP位点总数,k为片断中洞(片断中的空值位点)的个数.由于一个Mate-Pair片段中洞的个数可以达到100,因此,在片段数据中有Mate-Pair的情况下,Bafna的算法通常是不可行的.根据片段数据的特点提出了一个时间复杂度为O((n-1)(k₁-1)k₂2^2h+(k₁+1)^2h+nk₂+mk₁)的新算法,其中,k₁为一个片断覆盖的最大SNP位点数(不大于n),k₂为覆盖同一SNP位点的片段的最大数(通常不大于19),h为覆盖同一SNP位点且在该位点取空值的片断的最大数(不大于k₂).该算法的时间复杂度与片断中洞的个数的最大值k没有直接的关系,在有Mate-Pair片断数据的情况下仍然能够有效地进行计算,具有良好的可扩展性和较高的实用价值.     

Voronoi diagrams of moving points in the plane and of lines in space: tight bounds for simple configurations

The combinatorial complexities of (1) the Voronoi diagram of moving points in 2D and (2) the Voronoi diagram of lines in 3D, both under the Euclidean metric, continues to challenge geometers because of the open gap between the Ω(n²) lower bound and the O(n3+?) upper bound. Each of these two combinatorial problems has a closely related problem involving Minkowski sums: (1′) the complexity of a Minkowski sum of a planar disk with a set of lines in 3D and (2′) the complexity of a Minkowski sum of a sphere with a set of lines in 3D. These Minkowski sums can be considered “cross-sections” of the corresponding Voronoi diagrams. Of the four complexity problems mentioned, problems (1′) and (2′) have recently been shown to have a nearly tight bound: both complexities are O(n2+?) with lower bound Ω(n²).In this paper, we determine the combinatorial complexities of these four problems for some very simple input configurations. In particular, we study point configurations with just two degrees of freedom (DOFs), exploring both the Voronoi diagrams and the corresponding Minkowski sums. We consider the traditional versions of these problems to have 4 DOFs. We show that even for these simple configurations the combinatorial complexities have upper bounds of either O(n²) or O(n2+?) and lower bounds of Ω(n²).     

Diameter variability of cycles and tori

The diameter of a graph is an important factor for communication as it determines the maximum communication delay between any pair of processors in a network. Graham and Harary [N. Graham, F. Harary, Changing and unchanging the diameter of a hypercube, Discrete Applied Mathematics 37/38 (1992) 265-274] studied how the diameter of hypercubes can be affected by increasing and decreasing edges. They concerned whether the diameter is changed or remains unchanged when the edges are increased or decreased. In this paper, we modify three measures proposed in Graham and Harary (1992) to include the extent of the change of the diameter. Let D^-k(G) is the least number of edges whose addition to G decreases the diameter by (at least) k, D⁺⁰(G) is the maximum number of edges whose deletion from G does not change the diameter, and D^+k(G) is the least number of edges whose deletion from G increases the diameter by (at least) k. In this paper, we find the values of D^-k(C_m), D^-1(T_m,n), D^-2(T_m,n), D⁺¹(T_m,n), and a lower bound for D⁺⁰(T_m,n) where C_m be a cycle with m vertices, T_m,n be a torus of size m by n.     

Improving bounds on link failure tolerance of the star graph

Determination of the minimum number of faulty links, f(n,k), that make every n-k-dimensional sub-star graph S_n-k faulty in an n-dimensional star network S_n, has been the subject of several studies. Bounds on f(n,k) have already been derived, and it is known that f(n,1)=n+2. Here, we improve the bounds on f(n,k). Specifically, it is shown that f(n,k)?(k+1)F(n,k), where F(n,k) is the minimum number of faulty nodes that make every S_n-k faulty in S_n. The complexity of f(n,k) is shown to be O(n²k) which is an improvement over the previously known upper bound of O(n³); this result in a special case leads to f(n,2)=O(n^↑2), settling a conjecture introduced in an earlier paper. A systematic method to derive the labels of the faulty links in case of f(n,1) is also introduced.     

Improved algorithms for the k simple shortest paths and the replacement paths problems

Given a directed, non-negatively weighted graph G=(V,E) and s,t∈V, we consider two problems. In the k simple shortest paths problem, we want to find the k simple paths from s to t with the k smallest weights. In the replacement paths problem, we want the shortest path from s to t that avoids e, for every edge e in the original shortest path from s to t. The best known algorithm for the k simple shortest paths problem has a running of O(k(mn+n²logn)). For the replacement paths problem the best known result is the trivial one running in time O(mn+n²logn).In this paper we present two simple algorithms for the replacement paths problem and the k simple shortest paths problem in weighted directed graphs (using a solution of the All Pairs Shortest Paths problem). The running time of our algorithm for the replacement paths problem is O(mn+n²loglogn). For the k simple shortest paths we will perform O(k) iterations of the second simple shortest path (each in O(mn+n²loglogn) running time) using a useful property of Roditty and Zwick [L. Roditty, U. Zwick, Replacement paths and k simple shortest paths in unweighted directed graphs, in: Proc. of International Conference on Automata, Languages and Programming (ICALP), 2005, pp. 249-260]. These running times immediately improve the best known results for both problems over sparse graphs.Moreover, we prove that both the replacement paths and the k simple shortest paths (for constant k) problems are not harder than APSP (All Pairs Shortest Paths) in weighted directed graphs.     

Sorting helps for voronoi diagrams

It is well known that, using standard models of computation, Ω(n logn) time is required to build a Voronoi diagram forn point sites. This follows from the fact that a Voronoi diagram algorithm can be used to sort. However, if the sites are sorted before we start, can the Voronoi diagram be built any faster? We show that for certain interesting, although nonstandard, types of Voronoi diagrams, sorting helps. These nonstandard types of Voronoi diagrams use a convex distance function instead of the standard Euclidean distance. A convex distance function exists for any convex shape, but the distance functions based on polygons (especially triangles) lead to particularly efficient Voronoi diagram algorithms. Specifically, a Voronoi diagram using a convex distance function based on a triangle can be built inO (n log logn) time after initially sorting then sites twice. Convex distance functions based on other polygons require more initial sorting.     

Refined memorization for vertex cover

Memorization is a technique which allows to speed up exponential recursive algorithms at the cost of an exponential space complexity. This technique already leads to the currently fastest algorithm for fixed-parameter vertex cover, whose time complexity is O(k^1.2832k^1.5+kn), where n is the number of nodes and k is the size of the vertex cover. Via a refined use of memorization, we obtain an O(k^1.2759k^1.5+kn) algorithm for the same problem. We moreover show how to further reduce the complexity to O(k^1.2745k⁴+kn).     

多连通多边形的内部Voronoi图的顶点和边数的上界

多边形的Voronoi图在路径规划、碰撞检测等方面有着广泛的应用,其顶点和边数在这些应用算法的复杂度分析方面起着重要作用.Held证明了一个简单多边形的内部Voronoi图最多有n+k-2个顶点和2(n+k)-3条边,其中n和k分别是多边形的顶点和内尖点数.但其结论不能适用于多连通多边形.对多连通多边形进行研究,通过将其Voronoi图转化为有根树,并利用有根树的性质,给出了其内部Voronoi图的顶点和边数上界的估计,并对Voronoi区域的边界所包含顶点和边数的平均值进行了讨论."SDU数字博物馆"系统所采用的基于Voronoi图的可见性算法的复杂度分析,就利用了所得出的结论.     

The prism machine: An alternative to the pyramid

The prism machine is a stack of n cellular arrays, each of size 2ⁿ × 2ⁿ. Cell (i, j) on level k is connected to cells (i, j), (i + 2^k, j), and (i, j + 2^k) on level k + 1, 1 ≤ k < n, where the sums are modulo 2ⁿ. Such a machine can perform various operations (e.g., “Gaussian” convolutions or least-squares polynomial fits) on image neighborhoods of power-of-2 sizes in every position in O(n) time, unlike a pyramid machine which can do this only in sampled positions. It can also compute the discrete Fourier transform in O(n) time. It consists of n · 4ⁿ cells, while a pyramid consists of fewer than 4ⁿ⁺¹/3 cells; but in practice n would be at most 10, so that a prism would be at most about seven times as large as a pyramid.     

Simple and Improved Parameterized Algorithms for Multiterminal Cuts

Given a graph G=(V,E) with n vertices and m edges, and a subset T of k vertices called terminals, the Edge (respectively, Vertex) Multiterminal Cut problem is to find a set of at most l edges (non-terminal vertices), whose removal from G separates each terminal from all the others. These two problems are NP-hard for k≥3 but well-known to be polynomial-time solvable for k=2 by the flow technique. In this paper, based on a notion farthest minimum isolating cut, we design several simple and improved algorithms for Multiterminal Cut. We show that Edge Multiterminal Cut can be solved in O(2 ^l kT(n,m)) time and Vertex Multiterminal Cut can be solved in O(k ^l T(n,m)) time, where T(n,m)=O(min?(n ^2/3,m ^1/2)m) is the running time of finding a minimum (s,t) cut in an unweighted graph. Furthermore, the running time bounds of our algorithms can be further reduced for small values of k: Edge 3-Terminal Cut can be solved in O(1.415 ^l T(n,m)) time, and Vertex {3,4,5,6}-Terminal Cuts can be solved in O(2.059 ^l T(n,m)), O(2.772 ^l T(n,m)), O(3.349 ^l T(n,m)) and O(3.857 ^l T(n,m)) time respectively. Our results on Multiterminal Cut can also be used to obtain faster algorithms for Multicut: $O((\min(\sqrt{2k},l)+1)^{2k}2^{l}T(n,m))Given a graph G=(V,E) with n vertices and m edges, and a subset T of k vertices called terminals, the Edge (respectively, Vertex) Multiterminal Cut problem is to find a set of at most l edges (non-terminal vertices), whose removal from G separates each terminal from all the others. These two problems are NP-hard for k≥3 but well-known to be polynomial-time solvable for k=2 by the flow technique. In this paper, based on a notion farthest minimum isolating cut, we design several simple and improved algorithms for Multiterminal Cut. We show that Edge Multiterminal Cut can be solved in O(2 ^l kT(n,m)) time and Vertex Multiterminal Cut can be solved in O(k ^l T(n,m)) time, where T(n,m)=O(min (n ^2/3,m ^1/2)m) is the running time of finding a minimum (s,t) cut in an unweighted graph. Furthermore, the running time bounds of our algorithms can be further reduced for small values of k: Edge 3-Terminal Cut can be solved in O(1.415 ^l T(n,m)) time, and Vertex {3,4,5,6}-Terminal Cuts can be solved in O(2.059 ^l T(n,m)), O(2.772 ^l T(n,m)), O(3.349 ^l T(n,m)) and O(3.857 ^l T(n,m)) time respectively. Our results on Multiterminal Cut can also be used to obtain faster algorithms for Multicut: O((min(?{2k},l)+1)^2k2^lT(n,m))O((\min(\sqrt{2k},l)+1)^{2k}2^{l}T(n,m)) -time algorithm for Edge Multicut and O((2k) ^k+l/2 T(n,m))-time algorithm for Vertex Multicut.     

Some results on the computation of Voronoi diagrams on a mesh with multiple broadcasting

Voronoi diagram is one of the most fundamental and important geometric data structures. Voronoi diagram was historically defined for a set of points on the plane. The diagram partitions the plane into regions, one per site. The region of a site s consists of all points closer to s than to any other sites on the plane. Concepts of Voronoi diagram are often attributed to Voronoi (J. Reine Angew. Math. 133 (1907) 97) and Dirichlet (J. Reine Angew. Math. 40 (1850) 209). As a result of these early works, often the name Voronoi diagram and Dirichlet tessellation is used. Due to the importance of Voronoi diagrams, it is important that algorithms are devised to compute these structures in an efficient manner. Of course, this will create new opportunities for the applicability of these data structures. Towards this end, this paper presents new results for the computation of Voronoi diagrams for a set of n points, or n disjoint circles on the plane, on a mesh with multiple broadcasting (MMB) of size n×n. The algorithm runs in O(log² n) time.     

单体型组装MEC问题的参数化算法研究

单体型组装MEC问题指如何利用个体的DNA测序片断数据,翻转最少的SNP位点值以确定该个体单体型的计算问题。根据片段数据的特点提出了一个时间复杂度为 O（nk₂2^k₂+mlogm+mk₁）的参数化算法,其中m为片段数,n为单体型的SNP位点数,k1为一个片断覆盖的最大SNP位点数（通常小于10）,k₂为覆盖同一SNP位点的片段的最大数（通常不大于10）。对于实际DNA测序中的片段数据,即使m和n都相当大,该算法也可以在较短的时间得到MEC问题的精确解,具有良好的可扩展性和较高的实用价值。     

Planar Minimization Diagrams via Subdivision with Applications to Anisotropic Voronoi Diagrams

Let X = {f₁, …, f_n} be a set of scalar functions of the form f_i : ?² → ? which satisfy some natural properties. We describe a subdivision algorithm for computing a clustered ε‐isotopic approximation of the minimization diagram of X. By exploiting soft predicates and clustering of Voronoi vertices, our algorithm is the first that can handle arbitrary degeneracies in X, and allow scalar functions which are piecewise smooth, and not necessarily semi‐algebraic. We apply these ideas to the computation of anisotropic Voronoi diagram of polygonal sets; this is a natural generalization of anisotropic Voronoi diagrams of point sites, which extends multiplicatively weighted Voronoi diagrams. We implement a prototype of our anisotropic algorithm and provide experimental results.     

Robustness of star graph network under link failure

The star graph is an attractive underlying topology for distributed systems. Robustness of the star graph under link failure model is addressed. Specifically, the minimum number of faulty links, f(n, k), that make every (n − k)-dimensional substar S_n−k faulty in an n-dimensional star network S_n, is studied. It is shown that f(n,1)=n+2. Furthermore, an upper bound is given for f(n, 2) with complexity of O(n³) which is an improvement over the straightforward upper bound of O(n⁴) derived in this paper.     

A sweepline algorithm for Voronoi diagrams

We introduce a geometric transformation that allows Voronoi diagrams to be computed using a sweepline technique. The transformation is used to obtain simple algorithms for computing the Voronoi diagram of point sites, of line segment sites, and of weighted point sites. All algorithms haveO(n logn) worst-case running time and useO(n) space.     

A class of boolean functions with linear combinational complexity

In this paper we investigate the combinational complexity of Boolean functions satisfying a certain property, ⁿ_k,m. A function of n variables has the ⁿ_k,m property if there are at least m functions obtainable from each way of restricting it to a subset of n - - k variables. We show that the complexity of a ⁿ_3,5 function is no less than , and this bound cannot be much improved. Further, we find that for each k, there are ⁿ_k,2^k functions with complexity linear in n.