Peptoid–Peptide Hybrid Backbone Architectures

Peptidomimetic oligomers and foldamers have received considerable attention for over a decade, with β‐peptides and the so‐called peptoids (N‐alkylglycine oligomers) representing prominent examples of such architectures. Lately, hybrid or mixed backbones consisting of both α‐ and β‐amino acids (α/β‐peptides) have been investigated in some detail as well. The present Minireview is a survey of the literature concerning hybrid structures of α‐amino acids and peptoids, including β‐peptoids (N‐alkyl‐β‐alanine oligomers), and is intended to give an overview of this area of research within the field of peptidomimetic science.     

Peptoid-Peptide Hybrid Analogs of the Enterococcus faecalis Fsr Auto-Inducing Peptide (AIP) Reveal Crucial Structure-Activity Relationships

As multidrug-resistant bacteria become a more pressing risk to human health, alternate approaches to treating bacterial infections are being increasingly investigated. Enterococcus faecalis is an opportunistic pathogen responsible for a large percentage of secondary enterococci infections. Its pathogenicity has been shown to be largely dependent on a cell-density communication mechanism, termed quorum sensing. In this study, we conducted a systematic investigation of the lactone-containing macrocyclic signaling peptide used by E. faecalis for Fsr-mediated communication, termed gelatinase biosynthesis activating pheromone (GBAP). Specifically, through a combination of the on-resin sub-monomer and solution phase peptoid building block synthesis approaches, we successfully synthesized a library of peptoid-peptide hybrid analogs of GBAP and determined the biological effects associated with the introduction of the peptoid (N-alkyl glycine derivative) modifications. Within the macrocycle region of the peptide, as have been seen with other modifications, the F7 site was unusually tolerant toward peptoid modification, compared with other macrocyclic sites. Interestingly, within the exocyclic tail, peptoid modification at the N2 site completely abolished activity, a first for a single tail modification.     

Chemoenzymatic synthesis of novel N‐(2‐hydroxyethyl)‐β‐peptoid oligomer derivatives and application to porous polycaprolactone films

Poly[N‐(2‐hydroxyethyl)‐β‐propylamide] oligomer is synthesized using a simple enzymatic procedure involving Candida antarctica lipase B. This novel compound is obtained by a green and chemoselective method from economic reactants in good yield. The β‐peptoid oligomer is characterized by spectroscopic methods showing low molecular weight and low dispersity. Two derivatives of the β‐peptoid oligomer are prepared by acetylation and by grafting polycaprolactone by ring opening polymerization from the pendant hydroxyl groups. These products are blended with polycaprolactone to make films by solvent casting. The inclusion of the acyl derivatives of the β‐peptoid to polycaprolactone affects the morphology of the film yielding microstructured and nanostructured patterns. © 2013 Society of Chemical Industry     

Solid‐Phase Synthesis and Biological Evaluation of N‐Dipeptido L‐Homoserine Lactones as Quorum Sensing Activators

Bacteria use small signaling molecules to communicate in a process termed “quorum sensing” (QS), which enables the coordination of survival strategies, such as production of virulence factors and biofilm formation. In Gram‐negative bacteria, these signaling molecules are a series of N‐acylated L ‐homoserine lactones. With the goal of identifying non‐native compounds capable of modulating bacterial QS, a virtual library of N‐dipeptido L ‐homoserine lactones was screened in silico with two different crystal structures of LasR. The 30 most promising hits were synthesized on HMBA‐functionalized PEGA resin and released through an efficient acid‐mediated cyclative release mechanism. Subsequent screening for modulation of QS in Pseudomonas aeruginosa and E. coli identified six moderately strong activators. A follow‐up library designed from the preliminary derived structure–activity relationships was synthesized and evaluated for their ability to activate the QS system in this bacterium. This resulted in the identification of another six QS activators (two with low micromolar activity) thus illuminating structural features required for QS modulation.     

Chemical Synthesis and Enzymatic Testing of CMP‐Sialic Acid Derivatives

The cycloSal approach has been used in the past for the synthesis of a range of phosphorylated bioconjugates. In those reports, cycloSal nucleotides were allowed to react with different phosphate nucleophiles. With glycopyranosyl phosphates as nucleophiles, diphosphate‐linked sugar nucleotides were formed. Here, cycloSal‐nucleotides were used to prepare monophosphate‐linked sugar nucleotides successfully in high anomeric purity and high chemical yield. The method was successfully used for the synthesis of three nucleotide glycopyranoses as model compounds. The method was then applied to the syntheses of CMP‐N‐acetyl‐neuraminic acids (CMP‐Neu5NAc) and of four derivatives with different modifications at their amino functions (N‐propanoyl, N‐butanoyl, N‐pentanoyl and N‐cyclopropylcarbonyl). The compounds were used for initial enzymatic studies with a bacterial polysialyltransferase (polyST). Surprisingly, the enzyme showed marked differences in terms of utilisation of the four derivatives. The N‐propanoyl, N‐butanoyl, and N‐pentanoyl derivatives were efficiently used in a first transfer with a fluorescently labelled trisialo‐acceptor. However, elongation of the resulting tetrasialo‐acceptors worsened progressively with the size of the N‐acyl chain. The N‐pentanoyl derivative allowed a single transfer, leading to a capped tetramer. The N‐cyclopropylcarbonyl derivative was not transferred.     

Synthesis,characterization, and applications of novel additives of polysiloxane containing N,N′‐bis(diphenylsilyl)tetraphenylcyclodisilazane

Three N,N′‐bis(diphenylsilyl)tetraphenylcyclodisilazane‐based derivatives, N,N′‐bis(3,3,3‐trimethyl‐1,1‐diphenyl‐disiloxanyl)tetraphenylcyclodisilazane, N‐(3,3‐dimethyl‐1,1‐diphenyl‐3‐vinyl‐disiloxanyl)‐N′‐(3,3,3‐trimethyl‐1,1‐diphenyl‐disiloxanyl)‐tetraphenylcyclodisilazane, and N,N′‐bis‐(3,3‐dimethyl‐1,1‐diphenyl‐3‐vinyl‐disiloxanyl) tetraphenylcyclodisilazane, were synthesized. These compounds were synthesized in an easy and effective route. X‐ray single‐crystal diffraction analyses showed that the four‐member rings were planar rings, and the structures are different with the different substitution. The compound N,N′‐bis‐(3,3‐dimethyl‐1,1‐diphenyl‐3‐vinyl‐disiloxanyl) tetraphenylcyclodisilazane was added to the silicone rubber as additive to enhance the thermal stability greatly increased the thermal stability of the silicone rubber, without altering the glass transition temperature. The weight loss at 350°C in nitrogen atmosphere for 24 h reduced from 55.8% for 0 wt % to 9.8% for 10 wt % addition N,N′‐Bis‐(3,3‐dimethyl‐1,1‐diphenyl‐3‐vinyl‐disiloxanyl)tetraphenylcyclodisilazane. © 2007 Wiley Periodicals, Inc. J Appl Polym Sci 2007     

Copper(I)‐Catalyzed Synthesis of Novel 4‐(Trifluoromethyl)‐[1,2,3]triazolo[1,5‐a]quinoxalines via Cascade Reactions of N‐(o‐Haloaryl)alkynylimine with Sodium Azide

Novel tricyclic 4‐(trifluoromethyl)‐[1,2,3]triazolo[1,5‐a]quinoxalines were readily prepared from N‐(o‐haloaryl)alkynylimines and sodium azide via copper(I)‐catalyzed tandem reactions. This synthetic strategy provides an efficient way to access a library of novel heterocyclic compounds that are of interest in drug discovery.     

Quinone‐Fused Pyrazoles through 1,3‐Dipolar Cycloadditions: Synthesis of Tricyclic Scaffolds and in vitro Cytotoxic Activity Evaluation on Glioblastoma Cancer Cells

A novel and straightforward synthesis of highly substituted isoquinoline‐5,8‐dione fused tricyclic pyrazoles is reported. The key step of the synthetic sequence is a regioselective, Ag₂CO₃ promoted, 1,3‐dipolar cycloaddition of C‐heteroaryl‐N‐aryl nitrilimines and substituted isoquinoline‐5,8‐diones. The broad functional group tolerability and mild reaction conditions were found to be suitable for the preparation of a small library of compounds. These scaffolds were designed to interact with multiple biological residues, and two of them, after brief synthetic elaborations, were analyzed by molecular docking studies as potential anticancer drugs. In vitro studies confirmed the potent anticancer effects, showing promising IC₅₀ values as low as 2.5 μm against three different glioblastoma cell lines. Their cytotoxic activity was finally positively correlated to their ability to inhibit PI3K/mTOR kinases, which are responsible for the regulation of diverse cellular processes in human cancer cells.     

Effect of N,N‐diethyl‐m‐toluamide on the structure and dyeing properties of meta‐aramid and para‐aramid fibre

N,N‐Diethyl‐m‐toluamide has been widely used in the mosquito‐repellent finishing of textiles over the past few decades, but the use of N,N‐diethyl‐m‐toluamide as a dye carrier for aramid dyeing with disperse dye has been seldom reported. Meanwhile, the application of aramid fibre in clothing is limited because it is difficult to dye. In this work, the effect of N,N‐diethyl‐m‐toluamide on the dyeing properties of aramid fibre was examined by measuring the percentage disperse dye exhaustion under different conditions. In order to understand the mechanism by which N,N‐diethyl‐m‐toluamide promotes the exhaustion of disperse dye on aramid fibre, the ultraviolet‐visible spectrum of the dye and N,N‐diethyl‐m‐toluamide solution, the glass transition temperature, the crystalline structure, and the degree of orientation of aramid fibre treated with N,N‐diethyl‐m‐toluamide were measured by ultraviolet‐visible spectrophotometry, differential scanning calorimetry, X‐ray diffraction analysis, and velocity‐oriented tests respectively. The results indicated that N,N‐diethyl‐m‐toluamide not only could reduce the glass transition temperature and degree of orientation of aramid fibre but could also improve the solubility of disperse dye in aqueous solution, and therefore could enhance the percentage disperse dye uptake on aramid fibre, whereas treatment with N,N‐diethyl‐m‐toluamide showed little effect on the crystalline structure of aramid fibre. The results implied that N,N‐diethyl‐m‐toluamide was beneficial to the diffusion of disperse dye molecules into the amorphous region of aramid fibre under the dyeing conditions, but seldom affected the mechanical properties of aramid fibre.     

Potentiometric studies of oxidation–reduction reactions with redox copolymers

Polymeric oxidants in the bead form that were macroporous styrene/divinylbenzene copolymers containing N‐chlorosulfonamide functional groups (in sodium or hydrogen form) or N‐bromosulfonamide groups (in sodium form) were synthesized and investigated to determine their oxidizing powers. The redox potentials of the N‐chlorosulfonamide/sulfonamide and N‐bromosulfonamide/sulfonamide systems were determined by potentiometric studies at different pH values with aqueous solutions of Na₂SO₃, KCN, and KSCN as reducers. The formal redox potentials of the N‐chlorosulfonamide copolymers were 0.79, 0.44, and ?0.12 V at pH's of 1.8, 8.45, and 13.6, respectively. The formal redox potential of the N‐bromosulfonamide copolymer was about 100 mV higher in comparable conditions and in solutions over pH = 5 (e.g., 0.56 V at pH = 8.56). The comparatively higher oxidizing power of the N‐bromosulfonamide copolymer was particularly evident in a strong alkaline medium (in which the N‐chlorosulfonamide copolymer was not reactive). In contrast, the N‐chlorosulfonamide copolymer showed strong oxidative properties in acidic media (in which the N‐bromosulfonamide copolymer decomposed itself). © 2007 Wiley Periodicals, Inc. J Appl Polym Sci 2008     

Study of chitosan and its derivatives as preservatives for field natural rubber latex

In this study, the chitosan and its derivatives were tested for their preservative activities for field natural rubber (NR) latex. A series of chitosans with different molecular weights were obtained by nitrous acid depolymerization. The chemically modified chitosans, N‐carboxymethyl chitosan (NCMCh), N‐sulfated chitosan (NSCh), and N‐(2‐hydroxy)propyl‐3‐trimethylammonium chitosan chloride (NHTACh), were prepared from high and low‐molecular weight chitosans. Preservative activities for field NR latex of these chitosans were investigated based on the measurement of volatile fatty acids (VFA) number of the treated latex. The preservative activities of chitosan increased with decreasing molecular weights. The low‐ molecular weight NSCh and NHTACh exhibited good preservative activity for the latex. By the use of low‐molecular weight NHTACh in combination with octylphenol poly (ethyleneglycolether) (Nonidet P40), the latex was successfully preserved for more than 1 month in the low‐ammonia condition. The results showed an attractive feature to develop the preservative system, which was possible to reduce the concentrations of ammonia and carcinogenic nitrosamine in the NR latex. © 2011 Wiley Periodicals, Inc. J Appl Polym Sci, 2011     

Synthesis,Structure, and Properties of N,N′‐Dinitrourea

Information on synthesis methods and properties of N,N′‐dinitrourea and its salts, which were reported virtually simultaneously by different authors in different publications, is summarized and systematized. Merits and drawbacks of various approaches for the synthesis of the target products are discussed. The reactivity of N,N′‐dinitrourea and its salts in the reactions of nucleophilic substitution and condensation is discussed.     

Use of a CO2‐switchable hydrophobic associating polymer to enhance viscosity–response

A series of copolymers, poly(acrylamide)‐co‐poly(N,N‐dimethylaminoethyl methacrylate)‐co‐poly(N‐cetyl DMAEMA) (abbreviation PDAMCn), was synthesized with different monomer ratios. The resulting copolymer solution shows pronounced viscosity–response property which is CO₂‐triggered and N₂‐enabled. Electrical conductivity experiment shows that tertiary amine group on DMAEMA experiences a protonate and deprotonate transition upon CO₂ addition and its removal. In addition, different incorporation rates of DMAEMA leads to two kinds of morphological change in the presence of CO₂ and thus induces different rheological behaviors. PDAMCn incorporating longer hydrophobic monomer (C₁₈DM) show more pronounced initial viscosity and higher critical stress required to cause network deformation, which consequently enhances the viscosity–response property of the solution. The addition of NaCl could also tune the viscosity of PDAMCn solution. © 2014 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2015 , 132, 41468.     

Synthesis of switchable amphipathic molecules triggered by CO2 through carbonyl‐amine condensation

Five long‐chain alkyl amidines were synthesized by condensation of N,N‐dimethylacetamide with octylamine, decylamine, dodecylamine, tetradecylamine, and hexadecylamine, respectively. Synthesis conditions including solvent, pH, temperature, and ratio of reactants were studied. The series of long‐chain alkyl amidine compounds reacted with dry ice to produce amidinium bicarbonates cationic amphipathic molecules. The critical micelle concentration (cmc) and surface tension at cmc (γ_cmc) measured by drop volume method show that these amphipathic molecules have excellent surface activity. The changes of cationic content measured by two‐phase titration and conductivity before and after bubbling CO₂, show different properties between amidines and amidinium bicarbonates cationic amphipathic molecules. The switchable function of the amidinium bicarbonate cationic amphipathic molecule in emulsification and demulsification was studied. Practical applications : Our innovative work is synthesizing switchable amphipathic molecules, N′‐alkyl‐N,N‐dimethylacetamidines, by carbonyl‐amine condensation. Compared with a former way of synthesis, our work shows great potential advantages in industrial application. Our synthesis route is simpler with higher yield and is carried out at ambient temperature. Moreover, the products are environmentally friendly. Compared with traditional amphipathic molecules, our products, N′‐alkyl‐N,N‐dimethylacetamidines, show good switchable properties, which can be switched on and off, trigged by CO₂.This means these products can be reused for several times, which is significant for environmental protection.     

Structure‐Based Design of Microsomal Prostaglandin E2 Synthase‐1 (mPGES‐1) Inhibitors using a Virtual Fragment Growing Optimization Scheme

A small library of 2,3‐dihydroxybenzamide‐ and N‐(2,3‐dihydroxyphenyl)‐4‐sulfonamide‐based microsomal prostaglandin E₂ synthase‐1 (mPGES‐1) inhibitors was identified following a step‐by‐step optimization of small aromatic fragments selected to interact in focused regions in the active site of mPGES‐1. During the virtual optimization process, the 2,3‐dihydroxybenzamide moiety was first selected as a backbone of the proposed new chemical entities; the identified compounds were then synthesized and biologically evaluated, identifying derivatives with very promising inhibitory activities in the micromolar range. Subsequent structure‐guided replacement of the 2,3‐dihydroxybenzamide by the N‐(2,3‐dihydroxyphenyl)sulfonamide moiety led to the identification of N‐(2,3‐dihydroxyphenyl)‐4‐biphenylsulfonamide ( 6 ), the most potent small molecule of the series (IC₅₀=0.53±0.04 μm ). The simple synthetic procedure and the possibility of enhancing the potency of this class of inhibitors through additional structural modifications pave the way for further development of new molecules with mPGES‐1‐inhibitory activity, with potential application as anti‐inflammatory and anticancer agents.     

Effect of pH on the drug release rate from a new polymer–drug conjugate system

The corresponding N‐hydroximide and N‐methyl‐N‐hydroximide of poly[ethylene‐alt‐(maleic anhydride)] (weight average molecular weight (M_w) of 100–500 g mol^?1) were prepared as a new oral drug delivery system. Syntheses of N‐hydroximide and N‐methylhydroxamic acid of poly[ethylene‐alt‐(maleic anhydride)] were carried out by chemical modification of polymer with hydroxylamine and N‐methylhydroxylamine, respectively, to give water‐soluble polymers. These activated polymers were immobilized with ketoprofen in the presence of dicyclohexylcarbodiimide to give the corresponding water‐insoluble ketoprofen conjugates. All products were characterized by elemental analysis as well as Fourier transform infrared and ¹H NMR spectra. In vitro release of ketoprofen was studied by measuring UV absorption at λ_max = 260 nm as a function of time. This study demonstrated the potential use of N‐hydroximide and N‐methyl‐N‐hydroxamic acid of poly[ethylene‐alt‐(maleic anhydride)] as a drug delivery system. Controlled release was studied at different pH values and at different temperatures. At physiological temperature, the amount of drug released increased with increasing pH. The copolymer‐drug adducts released the drug very slowly at the low pH found in the stomach thus protecting the drug from the action of high acid conditions and resident digestive enzymes. These N‐hydroxamic acid polymer‐drug conjugates were found to be potentially useful in the delivery of macromolecular drugs to targeted sites in the lower gastrointestinal tract and the colon area. Copyright © 2007 Society of Chemical Industry     

Synthesis and application of the first radioligand targeting the allosteric binding pocket of chemokine receptor CXCR3

Strategies for the identification of allosteric modulators of chemokine receptors largely rely on various cell‐based functional assays. Radioligand binding assays are typically not available for allosteric binding sites. We synthesized, purified, and applied the first tritium‐labeled allosteric modulator of the human chemokine receptor CXCR3 (RAMX3, [³H]N‐{1‐[3‐(4‐ethoxyphenyl)‐4‐oxo‐3,4‐dihydropyrido[2,3‐d]pyrimidin‐2‐yl]ethyl}‐2‐[4‐fluoro‐3‐(trifluoromethyl)phenyl]‐N‐[(1‐methylpiperidin‐4‐yl)methyl]acetamide). RAMX3 is chemically derived from 8‐azaquinazolinone‐type allosteric modulators and binds to the CXCR3 receptor with a K_d value of 1.08 nM (specific activity: 80.4 Ci mmol^?1). Radioligand displacement assays showed potent negative cooperativity between RAMX3 and chemokine CXCL11, providing a basis for the use of RAMX3 to investigate other potential allosteric modulators. Additionally, the synthesis and characterization of a number of other full and truncated 8‐azaquinazoline analogues were used to validate the binding properties of RAMX3. We demonstrate that RAMX3 can be efficiently used to facilitate the discovery and characterization of small molecules as allosteric modulators of the CXCR3 receptor.     

Two‐Photon Fluorescent Imaging of Myelination in the Spinal Cord

Myelination is a fundamental biological process in the vertebrate nervous system. Damage to or malformation of myelin can lead to various neurological diseases; for example, demyelination in the spinal cord is a major cause of paralysis of patients suffering from multiple sclerosis and related diseases. The ability to directly track myelin levels in the spinal cord is needed in order to assess the efficacy of therapeutics in promoting myelin repair. To address this unmet need, 4‐((E)‐4‐((E)‐4‐aminostyryl)‐2,5‐dimethoxystyryl)‐N‐methylaniline, known as Case Imaging Compound (CIC), has been developed as a myelin‐targeted fluorescent imaging agent that selectively binds to myelin. CIC was synthesized via an improved route and evaluated as a fluorescent probe for two‐photon fluorescent imaging of myelin in the spinal cord in both demyelinated and dysmyelinated models. In vitro and ex vivo tissue staining both suggest that CIC selectively binds to in animal models. Further evaluation in animal models indicated that CIC is sensitive to differences in myelin content in healthy versus pathological myelin. CIC could potentially be useful in the development and evaluation of novel therapies for multiple sclerosis and other demyelinating diseases.