Reexamination of the Ergothioneine Biosynthetic Methyltransferase EgtD from Mycobacterium tuberculosis as a Protein Kinase Substrate

Ergothioneine has emerged as a crucial cytoprotectant in the pathogenic lifestyle of Mycobacterium tuberculosis. Production of this antioxidant from primary metabolites may be regulated by phosphorylation of Thr213 in the active site of the methyltransferase EgtD. The structure of mycobacterial EgtD suggests that this post-translational modification would require a large-scale change in conformation to make the active-site residue accessible to a protein kinase. In this report, we show that, under in vitro conditions, EgtD is not a substrate of protein kinase PknD.     

Pyrene functionalized side chain alanine and histidine containing copolyacrylates prepared by free radical copolymerization

An optically active copolyacrylate, poly(N‐acryloyl‐L‐alanine‐co‐N‐acryloyl‐L‐histidine), is prepared by classical radical copolymerization of N‐acryloyl‐L‐alanine and N‐acryloyl‐L‐histidine, and further chemically modified with 1‐pyrene‐methanol. The structures of the synthesized compounds are confirmed by spectral analysis (FTIR, ¹H/¹³C‐NMR, UV, fluorescence spectroscopy), thermal methods, and molecular weight measurements. Also, their optical activity is studied using circular dichroism (CD) spectroscopy and optical rotation measurements. The specific rotation values reveal that the direction of rotation of the parent copolymer is dictated by the monomer containing L‐alanine. CD data suggest negative and positive Cotton effects regarding the monomers with amino acids. In the case of the unmodified copolymer it is noted the changes of ellipticity values with increasing pH while the random‐coil conformation is preserved, which makes it suitable as a pH‐responsive system. Photochemical and photophysical investigations reveal that the pyrene‐functionalized chiroptical copolyacrylate can be used as a fluorescent chemosensor for the detection of nitro‐derivatives in organic media. © 2016 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2017 , 134, 44457.     

Combination of UDP‐Glc(NAc) 4′‐Epimerase and Galactose Oxidase in a One‐Pot Synthesis of Biotinylated Nucleotide Sugars

The enzymatic epimerization of uridine 5′‐diphospho‐α‐D ‐glucose (UDP‐Glc, 1 ) and uridine 5′‐diphospho‐N‐acetyl‐α‐D ‐glucosamine (UDP‐GlcNAc, 2 ) and the subsequent oxidation of uridine 5′‐diphospho‐α‐D ‐galactose (UDP‐Gal, 3 ) and uridine 5′‐diphospho‐N‐acetyl‐α‐D ‐galactosamine (UDP‐GalNAc, 4 ) were combined with chemical biotinylation with biotin‐ε‐amidocaproylhydrazide in a one‐pot synthesis. Analysis by CE and NMR revealed a mixture (1.0:1.4) of the biotinylated nucleotide sugars uridine 5′‐diphospho‐6‐biotin‐ε‐amidocaproylhydrazino‐α‐D ‐galactose (UDP‐6‐biotinyl‐Gal, 7) and uridine 5′‐diphospho‐6‐biotin‐ε‐amidocaproylhydrazino‐α‐D ‐glucose (UDP‐6‐biotinyl‐Glc, 9 ), respectively, in a reaction started with 1 . One product, uridine 5′‐diphospho‐6‐biotin‐ε‐amidocaproylhydrazino‐N‐acetyl‐α‐D ‐galactosamine (UDP‐6‐biotinyl‐GalNAc, 8) was formed when the reaction was initiated with 2 . It could be demonstrated for the first time that a UDP‐Glc(NAc) 4′‐epimerase (Gne from Campylobacter jejuni) and galactose oxidase from Dactylium dendroides can be used simultaneously in enzymatic catalysis. This is of particular interest since the coaction of an enzyme demanding reductive conditions and an oxygen‐dependent oxidase is unexpected.     

N-methylation of the amide bond by methyltransferase asm10 in ansamitocin biosynthesis

Ansamitocins are potent antitumor agents produced by Actinosynnema pretiosum. As deduced from their structures, an N‐methylation on the amide bond is required among the various modifications. The protein encoded by asm10 belongs to the SAM‐dependent methyltransferase family. Through gene inactivation and complementation, asm10 was proved to be responsible for the N‐methylation of ansamitocins. Asm10 is a 33.0 kDa monomer, as determined by gel filtration. By using N‐desmethyl‐ansamitocin P‐3 as substrate, the optimal temperature and pH for Asm10 catalysis were determined to be 32 °C and 10.0, respectively. Asm10 also showed broad substrate flexibility toward other N‐desmethyl‐ansamycins and synthetic indolin‐2‐ones. Through site‐directed mutagenesis, Asp154 and Leu155 of Asm10 were confirmed to be essential for its catalysis, possibly through the binding of SAM. The characterization of this unique N‐methyltransferase has enriched the toolbox for engineering N‐methylated derivatives from both natural and synthetic compounds; this will allow known potential drugs to be modified.     

Asymmetric Aza‐Morita–Baylis–Hillman‐Type Reactions: The Highly Enantioselective Reaction between Unmodified α,β‐ Unsaturated Aldehydes and N‐Acylimines by Organo‐co‐catalysis

The highly enantioselective organo‐co‐catalytic aza‐Morita–Baylis–Hillman (MBH)‐type reaction between N‐carbamate‐protected imines and α,β‐unsaturated aldehydes has been developed. The organic co‐catalytic system of proline and 1,4‐diazabicyclo[2.2.2]octane (DABCO) enables the asymmetric synthesis of the corresponding N‐Boc‐ and N‐Cbz‐protected β‐amino‐α‐alkylidene‐aldehydes in good to high yields and up to 99% ee. In the case of aza‐MBH‐type addition of enals to phenylprop‐2‐ene‐1‐imines, the co‐catalytic reaction exhibits excellent 1,2‐selectivity. The organo‐co‐catalytic aza‐MBH‐type reaction can also be performed by the direct highly enantioselective addition of α,β‐unsaturated aldehydes to bench‐stable N‐carbamate‐protected α‐amidosulfones to give the corresponding β‐amino‐α‐alkylidene‐aldehydes with up to 99% ee. The organo‐co‐catalytic aza‐MBH‐type reaction is also an expeditious entry to nearly enantiomerically pure β‐amino‐α‐alkylidene‐amino acids and β‐amino‐α‐alkylidene‐lactams (99% ee). The mechanism and stereochemistry of the chiral amine and DABCO co‐catalyzed aza‐MBH‐type reaction are also discussed.     

Optical resolution of racemic amino acid derivatives with chiral polyamides bearing glutamyl residue as a diacid component

Novel chiral polyamides with chiral environment in their main chains were obtained from aromatic diamine, 4,4′‐diaminodiphenylmethane (DADPM), and the D ‐isomer or the L ‐isomer of N‐α‐protected glutamic acid, such as N‐α‐benzyloxycarbonyl‐D ‐glutamic acid (Z‐D ‐Glu‐OH) or N‐α‐benzyloxycarbonyl‐L ‐glutamic acid (Z‐L ‐Glu‐OH), in the presence of triphenyl phosphite (TPP). Two types of newly prepared polyamide showed optical rotation, implying that there were asymmetric carbons in their main chains. Circular dichroism studies demonstrated that resulting chiral poly‐ amides took a helical structure. Optical resolution ability of those two types of polyamide was studied by adopting potential difference as a driving force for membrane transport. Membranes showed permselectivity toward racemic mixture of N‐α‐acetyltryptophan (Ac‐Trp). The permselectivity was dependent on the absolute configuration of diacid component. The permselectivity was expressed by diffusivity selectivity, which was determined by the presence of chiral helicity. © 2011 Wiley Periodicals, Inc. J Appl Polym Sci, 2011     

Surfactant Synthesis via Lipase Esterification of Methyl α-d-Glucopyranoside with Selected Aliphatic Carboxylic Acids

Lipase‐catalyzed esterification and properties of synthesized carbohydrate esters were investigated. Methyl α‐d ‐glucopyranoside was the acyl group acceptor and different carbon atom chain lengths of aliphatic carboxylic acids (C12, C14 and C16) as the acyl group donors were applied in the esterification. Physico‐chemical studies on the synthesized carbohydrate esters were carried out. It was found that melting point for the methyl 6‐O‐hexadecanoyl‐α‐d ‐glucopyranoside was the highest consecutively followed by methyl 6‐O‐tetradecanoyl‐α‐d ‐glucopyranoside and methyl 6‐O‐dodecanoyl‐α‐d ‐glucopyranoside. Liquid crystal properties of the synthesized carbohydrate ester synthesized were evaluated via optical polarized microscopy. It was found that the liquid crystal textures for mono‐substituted carbohydrate esters were of the smectic phase. In a quaternary system (carbohydrate ester/n‐butanol/n‐hexadecane/water), a maximum 34 % of water (by mass) was contained in the monophasic region of methyl 6‐O‐tetradecanoyl‐α‐d ‐glucopyranoside and a maximum of 52 % water (by mass) was contained in a monophasic methyl 6‐O‐dodecanoyl‐α‐d ‐glucopyranoside. For methyl‐6‐O‐dodecanoyl‐α‐d ‐glucopyranoside, its concentration at aggregation was 5.2 × 10^?4 mM, with minimum air/water surface tension of 26 mN m^?1. The Gibbs energy of micellization was calculated at ?50 kJ mol^?1. The maximum adsorption density of methyl 6‐O‐dodecanoyl‐α‐d ‐glucopyranoside was determined at 4 × 10^?6 mol m^?2 while its minimum area per surfactant molecule at the air/water surface was 47 Ų.     

Thermodynamic and Kinetic Study of Adsorption of R,S‐α‐Tetralol Enantiomers on the Chiral Adsorbent CHIRALPAK AD

Abstract

Experimental results for the separation of S,R‐α‐Tetralol enantiomers obtained on preparative columns packed with particle size 20 µm of chiral adsorbent CHIRALPAK AD are presented. The total porosity was measured by using the non‐retained compound 1,3,5‐Tri‐tert‐butylbenzene and was 0.61. The permeability of the bed packed with CHIRALPAK AD was calculated as 4.4×10^?13 m². The efficiency of columns was characterized by the height equivalent to a theoretical plate (HETP) and a linear dependency has been found over tested flow rates. The HETP of S‐α‐Tetralol and R‐α‐Tetralol calculated at the flow rate 5.0 cm³/min were 320 µm and 340 µm, respectively. Thermodynamic adsorption parameters enthalpy, ΔH and entropy, ΔS, have been calculated from van't Hoff plot. Equilibrium and kinetics of adsorption of single enantiomers and racemic mixture of α‐Tetralol on CHIRALPAK AD were evaluated as well. The parameters for multicomponent isotherm linear‐Langmuir model are presented. The breakthrough curves of α‐Tetralol enantiomers are simulated with a mathematical model that accounts for axial dispersion and linear driving force for the intraparticle mass transfer.     

Adding value to vegetable waste: Oil press cakes as substrates for microbial decalactone production

In this study several oil press cakes were investigated as exclusive substrates for different moulds and yeasts for the production of flavor‐active decalactones via solid‐state fermentation (SSF). Experiments are focused on pre‐treatment methods for olive cake to remove antimicrobial phenolic substances contained in the oil cake disturbing or even inhibiting microbial growth. Choosing Ceratocystis moniliformis as the reference microorganism best results were obtained by a combination of hot water flushes and enzymatic treatment of the cake. Fermentation with sunflower, olive and linseed cake did not lead to lactone formation in detectable amounts although all of these substrates provided good microbial growth. On castor cake, however, five microorganisms have synthesized the requested decalactones via SSF. Thus fermentation of the fungus Moniliella suaveolens on this substrate resulted in a maximum concentration of γ‐decalactone of 180.7 mg·kg^?1 dry matter without optimization. Another δ‐lactone, 6‐pentyl‐α‐pyrone, was produced in small amounts by the fungus Trichoderma harzianum on castor cake.     

Exploring Bacterial Heparinase II Activities with Defined Substrates

Bacterial heparinases that cleave heparan sulfate (HS) and heparin are widely used to generate low‐molecular‐weight heparins (LMWHs) and to structurally and functionally characterise heparin and HS biomolecules. We provide novel insights into the substrate specificity of heparinase II from two different bacteria: Pedobacter heparinus (formerly Flavobacterium heparinum) and Bacteroides eggerthii. The activity towards various well‐defined HS oligosaccharides was investigated by ¹H NMR spectroscopy; this revealed distinct specificities for the two heparinases. Heparinase II from P. heparinus appears to be more active and displays a broader substrate specificity than B. eggerthii heparinase II. Furthermore, HS di‐ and tetrasaccharides inhibited B. eggerthii heparinase II activity. A better understanding of heparinase substrate specificity will contribute to the production of homogenous LMWHs, provide better characterisation of heparin and HS and assist therapeutic applications.     

Ultrafiltration of metal ions by water‐soluble chelating poly(N‐acryloyl‐N‐methylpiperazine‐co‐N‐acetyl‐α‐aminoacrylic acid)

Water‐soluble copolymers of N‐acryloyl‐N‐methylpiperazine and N‐acetyl‐α‐aminoacrylic acid were synthesized by radical polymerization. The copolymerization yield ranged between 60 and 97%. The FTIR and NMR spectra demonstrated that the copolymerization occurred. The copolymer composition was determined from ¹H‐NMR spectra by comparison of methyl groups from both moieties. The copolymers were richest in AAA units. The metal ion retention properties were investigated by the liquid‐phase polymer‐based retention (LPR) technique at different pH and filtration factors. The affinity for the metal ions depended on the copolymer composition, pH, and filtration factor. © 2002 Wiley Periodicals, Inc. J Appl Polym Sci 83: 2556–2561, 2002     

Highly Enantioselective Phase‐Transfer Catalytic α‐Alkylation of α‐tert‐Butoxycarbonyllactams: Construction of β‐Quaternary Chiral Pyrrolidine and Piperidine Systems

A new enantioselective α‐alkylation of α‐tert‐butoxycarbonyllactams for the construction of β‐quaternary chiral pyrrolidine and piperidine core systems is reported. α‐Alkylations of N‐methyl‐α‐tert‐butoxycarbonylbutyrolactam and N‐diphenylmethyl‐α‐tert‐butoxycarbonylvalerolactam under phase‐transfer catalytic conditions (solid potassium hydroxide, toluene, −40 °C) in the presence of (S,S)‐3,4,5‐trifluorophenyl‐3,3′,5,5′‐tetrahydro‐2,6‐bis(3,4,5‐trifluorophenyl)‐4,4′‐spirobi[4H‐dinaphth[2,1‐c:1′,2′‐e]azepinium] bromide [(S,S)‐NAS Br] (5 mol%) afforded the corresponding α‐alkyl‐α‐tert‐butoxycarbonyllactams in very high chemical (up to 99%) and optical yields (up to 98% ee). Our new catalytic systems provide attractive synthetic methods for pyrrolidine‐ and piperidine‐based alkaloids and chiral intermediates with β‐quaternary carbon centers.     

Synthesis of ω‐amino‐α‐phenylcarbonate alkanes and their polymerization to [n]‐polyurethanes

Aliphatic [n]‐polyurethanes have recently been synthesized from ω‐isocyanato‐α‐alkanols or, more traditionally, by cationic ring‐opening polymerization of cyclourethanes or by the Bu₂Sn(OMe)₂‐promoted polycondensation of ω‐hydroxy‐α‐O‐phenylurethane alkanes. For the latter procedures, the conditions employed do not seem to be suitable for highly functionalized monomers. In contrast, the polymerization of ω‐amino‐α‐phenylcarbonate alkanes is expected to occur under milder conditions. ω‐Amino‐α‐phenylcarbonate alkanes have been synthesized from 6‐aminohexanol (1) and 3‐aminopropanol (6). The procedure involves the N‐Boc protection of the amino group, followed by activation of the alcohol. Removal of the N‐Boc affords the corresponding ω‐amino‐1‐O‐phenyloxycarbonyloxyalkane hydrochlorides. Other oligomeric comonomers between 1 and 6 have been prepared. The polymerization of these precursors takes place in the absence of metal catalysts to afford the corresponding linear and regioregular [n]‐polyurethanes. The procedure described is useful for the preparation of stable ω‐amino‐α‐phenylcarbonate alkane derivatives, which possess varied chain lengths between the terminal functions. These monomers yield [n]‐polyurethanes having various structures starting from just two aminoalkanols. The polyurethanes were obtained in high yields, with reasonable molecular weight and polydispersity values, and they were characterized spectroscopically and thermally. These studies reveal constitutionally uniform structures that are free of carbonate or urea linkages. Copyright © 2010 Society of Chemical Industry     

Monomers for Adhesive Polymers, 3. Synthesis,Radical Polymerization and Adhesive Properties of Hydrolytically Stable Phosphonic Acid Monomers

2‐(Dihydroxyphosphoryl)ethyloxy‐α‐methyl‐substituted methacrylic acids were synthesized by hydrolyzing ethyl 2‐[4‐(dihydroxyphosphoryl)‐2‐oxa‐butyl]‐acrylate. Methacrylonitrilo‐ or N,N‐diethylmethacrylamido‐phosphonic acids were obtained by ether formation of α‐chloromethacrylonitrile with hydroxyalkyl phosphonates or aminolysis of 2‐[4‐(dimethoxyphosphoryl)‐2‐oxa‐butyl]acrylic acid and subsequent hydrolysis to produce the corresponding phosphonic acid. The structure of the new monomers was characterized by IR and by ¹H, ¹³C and ³¹P NMR spectroscopy. The monomers dissolve well in water and are hydrolytically stable. They demonstrate a different behavior during radical polymerization in water with 2,2′‐azo(2‐methylpropionamidine) dihydrochloride (AMPAHC). This behavior may be attributed to the different reactivity of the starting radicals. Furthermore, adhesive properties of the phosphonic acid monomers were measured.     

Walking a Fine Line with Sucrose Phosphorylase: Efficient Single‐Step Biocatalytic Production of l‐Ascorbic Acid 2‐Glucoside from Sucrose

The 2‐O‐α‐d ‐glucoside of l ‐ascorbic acid (AA‐2G) is a highly stabilized form of vitamin C, with important industrial applications in cosmetics, food, and pharmaceuticals. AA‐2G is currently produced through biocatalytic glucosylation of l ‐ascorbic acid from starch‐derived oligosaccharides. Sucrose would be an ideal substrate for AA‐2G synthesis, but it lacks a suitable transglycosidase. We show here that in a narrow pH window (pH 4.8–6.0, with sharp optimum at pH 5.2), sucrose phosphorylases catalyzed the 2‐O‐α‐glucosylation of l ‐ascorbic acid from sucrose with high efficiency and perfect site‐selectivity. Optimized synthesis with the enzyme from Bifidobacterium longum at 40 °C gave a concentrated product (155 g L^?1; 460 mm ), from which pure AA‐2G was readily recovered in ～50 % overall yield, thus providing the basis for advanced production. The peculiar pH dependence is suggested to arise from a “reverse‐protonation” mechanism in which the catalytic base Glu232 on the glucosyl–enzyme intermediate must be protonated for attack on the anomeric carbon from the 2‐hydroxyl of the ionized l ‐ascorbate substrate.     

Investigation of Structural Determinants for the Substrate Specificity in the Zinc‐Dependent Alcohol Dehydrogenase CPCR2 from Candida parapsilosis

Zinc‐dependent alcohol dehydrogenases (ADHs) are a class of enzymes applied in different biocatalytic processes ranging from lab to industrial scale. However, one drawback is the limited substrate range, necessitating a whole array of different ADHs for the relevant substrate classes. In this study, we investigated structural determinants of the substrate spectrum in the zinc‐dependent ADH carbonyl reductase 2 from Candida parapsilosis (CPCR2), combining methods of mutational analysis with in silico substrate docking. Assigned active site residues were genetically randomized, and the resulting mutant libraries were screened with a selection of challenging carbonyl substrates. Three variants (C57A, W116K, and L119M) with improved activities toward different substrates were detected at neighboring positions in the active site. Thus, all possible combinations of the mutations were generated and characterized for their substrate specificity, yielding several improved variants. The most interesting were a C57A variant, with a 27‐fold increase in specific activity for 4′‐acetamidoacetophenone, and the double mutant CPCR2 B16‐(C57A, L119M), with a 45‐fold improvement in the k_cat?K_M^?1 value. The obtained variants were further investigated by in silico docking experiments. The results indicate that the mentioned residues are structural determinants of the substrate specificity of CPCR2, being major players in the definition of the active site. Comparison of these results with closely related enzymes suggests that these might even be transferred to other ADHs.     

Efficient and Green Route to γ‐Lactams by Copper‐Catalysed Reversed Atom Transfer Radical Cyclisation of α‐Polychloro‐N‐allylamides,using a Low Load of Metal (0.5 mol%)

The cyclisation of N‐allyl‐N‐substituted‐α‐polychloroamides is efficiently obtained through a copper‐catalysed activators regenerated by electron transfer–atom transfer radical cyclisation process, with a metal load of only 0.5 mol%. The redox catalyst is introduced in its inactive form as copper(II) chloride/[nitrogen ligand] complex, and continuously regenerated to the active copper(I) chloride/[nitrogen ligand] species by ascorbic acid. To preserve the catalyst integrity, the hydrochloric acid, released after each regeneration cycle, has been quenched by carbonate. The choice of the solvent is critical, the best performance being observed in ethyl acetate‐ethanol (3:1).     

Highly Efficient Suzuki Coupling Reaction of α‐Chloroalkylidene‐β‐lactones and β‐Lactams with Organoboronic Acids

The activation of C Cl bond of (Z)‐α‐chloroalkylidene‐β‐lactones and (E)‐α‐chloroalkylidene‐β‐lactams via the Suzuki cross‐coupling reaction is reported in this paper. Alkyl, heteroaromatic, substituted phenyl‐ and alkenylboronic acids can be coupled with a wide variety of α‐chloroalkylidene‐β‐lactones and β‐lactams in excellent yields within a short period of time. The cross‐coupling reaction of optically active substrates leads to the optically active compounds without racemization of the corresponding chiral center.     

Preparation and characterization of mPEG‐g‐α‐zein biohybrid micelles as a nano‐carrier

A new kind of block copolymer micelles methoxy polyethylene glycol (mPEG) grafted α‐zein protein (mPEG‐g‐α‐zein) was synthesized. The chemical composition of mPEG‐g‐α‐zein was identified with the help of FT‐IR and ¹H‐NMR. The biohybrid polymer can self‐assemble into spherical core–shell nanoparticles in aqueous solution. Scanning electron microscopy (SEM) and atomic force microscopy (AFM) were used to investigate the self‐assembled morphology of mPEG‐g‐α‐zein. Dynamic light scattering (DLS) results showed that the particle size of mPEG‐g‐α‐zein was about 90 nm. Moreover, the nanoparticles had a very low critical micelle concentration value with only 0.02 mg/mL. Then, the anticancer drug curcumin (CUR) was encapsulated into the biohybrid polymer micelles. The in vitro drug release profile showed a zero‐order release of CUR up to 12 h at 37°C. Cell viability studies revealed that the mPEG‐g‐α‐zein polymer exhibited low cytotoxicity for HepG2 cells (human hepatoma cells). Consequently, the mPEG‐g‐α‐zein micelles can be used as a potential nano‐carrier to encapsulate hydrophobic drugs and nutrients. © 2015 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2015 , 132, 42555.     

Synthesis of thermosensitive glycopolymers containing D‐glucose residue: Copolymers with N‐isopropylacrylamide

A new glycomonomer, 3‐acrylamido‐3‐deoxy‐1,2:5,6‐di‐O‐isopropylidene‐α‐D ‐glucofuranose, was synthesized from D ‐glucose. This monomer was homopolymerized and copolymerized with N‐isopropylacrylamide in different compositions by free‐radical polymerization. The composition of the copolymer was determined with ¹H‐NMR spectroscopy. On acid hydrolysis, water‐soluble deprotected copolymers were obtained. The protected and deprotected copolymers showed a sharp cloud‐point temperature. A linear correlation was obtained between the lower critical solution temperatures and the concentration of glycomonomer in the copolymers © 2008 Wiley Periodicals, Inc. J Appl Polym Sci, 2009