Declines in aquatic vegetation in navigation pool no. 8, upper Mississippi River between 1975 and 1991

The biomass and frequency of occurrence of aquatic macrophytes observed during 1975 and 1991 in Navigation Pool No. 8 of the upper Mississippi River were compared. Samples were collected from contiguous backwater, isolated backwater and impounded habitat types. Overall declines were observed in both frequency and biomass between the two years. Changes in depth, water clarity and bed sediment texture were also observed. About 50% of the samples collected in 1991 had no vegetation, compared with 20% in 1975. The greatest reduction in frequency occurred among submergent taxa (77% in 1975 to 31% in 1991), whereas only slight declines were observed for emergent taxa. However, the mean biomass of both lifeforms decreased substantially (48 to 1 g/m² for submergent and 61 to 27 g/m² for emergent lifeforms). The mean total biomass declined from 114g/m² in 1975 to 35 g/m² in 1991. Declines were most evident in the impounded habitat, where the frequency of occurrence of submergent taxa decreased from 83% in 1975 to 11% in 1991, and mean biomass decreased from 90 to 1 g/m². Similar but less extensive reductions in frequency and biomass of submergent taxa were observed in the contiguous backwater habitat. In contrast, both the frequency and biomass of floating-leaved macrophytes increased slightly in contiguous backwater habitats. Changes in frequency and biomass of macrophytes in isolated backwater habitats were neligible between 1975 and 1991. It is hypothesized that changes in the macrophyte community structure may be related to physical changes associated with 57 years of impoundment.     

Inter‐habitat variation in the benthos of the Upper Missouri River (North Dakota,USA): implications for Great River bioassessment

We examined inter‐habitat variation in benthic macroinvertebrate assemblages in the 180‐km Garrison Reach of the Upper Missouri River, North Dakota (USA) in 2001–2003. The Garrison Reach is unchannelized with a mostly rural setting. Flows are regulated by Garrison Dam. We sampled benthos from three habitats defined a priori: channel, shoreline, and backwater. Benthic assemblages were different in each habitat. Average Bray‐Curtis dissimilarity in assemblage composition ranged from 89% for backwater versus channel habitat to 70% for backwater versus shoreline habitat. There were distinct intra‐habitat groups within a priori habitats: channel assemblages included moving‐sand assemblages and other‐substrate channel assemblages; backwater assemblages included connected (to the river channel) and unconnected backwater assemblages; shorelines assemblages varied between natural (unprotected) and riprap (rock revetment) shorelines. Abundance and taxa richness were lowest and spatial variability highest for moving‐sand channel assemblages. Abundance was highest in backwaters. Taxa richness in backwaters and along channel shorelines were similar. Assemblages in all three habitats were dominated by Nematoda, Oligochaeta and Chironomidae. Taxa in these groups comprised at least 80% of mean abundance in all three habitats. Taxa that discriminated among habitats included the psammophilic chironomid Chernovskiia for moving‐sand channel substrates versus all other habitats; Hydroptila (Trichoptera) for riprap vs natural shorelines, Aulodrilus (Oligochaeta) for connected versus unconnected backwaters; and Nematoda for backwater versus channel and shoreline versus channel. Based on overlap patterns in benthic assemblages among habitats, we concluded that sampling main channel shorelines should also capture much of the natural and stressor‐induced variation in connected backwater and channel habitat exclusive of moving‐sand channel habitat. Published in 2006 by John Wiley & Sons, Ltd.     

长江上游巨型水库群联合蓄水调度研究

以长江上游30座水库巨型水库群为研究对象,建立提前蓄水多目标联合优化调度模型,采用分区策略、大系统聚合分解、参数模拟优化方法和并行逐次逼近寻优算法求解。研究结果表明:所提模型框架可较好地解决巨型水库群联合蓄水优化调度问题;智能算法对于复杂约束的多目标优化问题可产生大量非劣解;Pareto前沿分布范围均匀且广泛,可供决策者灵活调度。与原设计方案相比,在防洪风险得到控制的前提下,通过水库群提前蓄水联合优化调度,水库总蓄满率由90.40%增加到94.42%,年均增发电量76.5亿kW·h(+3.76%),经济社会效益显著。     

Consequences of stream impoundment on fish communities in a small North American drainage

We examined impoundment associated fish community changes in the Kinkaid Creek drainage of southern Illinois by comparing collections made in 1998 and 1999 with a pre‐impoundment survey conducted in 1958. We also analyzed other historical pre‐ and post‐impoundment collections made during the past 60+ years. A dramatic change in fish community structure occurred with the pre‐impoundment community dominated by cyprinids and the post‐impoundment community now dominated by centrarchids. In addition, a 50% increase in the number of fish species known from the Kinkaid Creek drainage has occurred, with 35% of all species known from Illinois now present in the drainage. This increase in species richness coincides with the extirpation of six native species. Possible explanations for the changes in the species assemblage and increased species richness include the introduction and dispersal of non‐native fish species and habitat alteration. Finally, we contend that processes, such as habitat alteration, must be considered when analyzing the pattern of increased species richness caused by non‐native species seen in North American drainages. Copyright © 2001 John Wiley & Sons, Ltd.     

Response of the benthic macroinvertebrate community in a northern Michigan stream to reduced summer streamflows

We evaluated the response of benthic macroinvertebrates in a Michigan trout stream to flow reduction by diverting water from a 602 m reach of Hunt Creek from June through August of 1994, 1997 and 1998. We also assessed the utility of the Physical Habitat Simulation system (PHABSIM) in predicting the response of benthic insects to water withdrawals by testing the assumption of a positive linear relationship between modelled habitat (weighted usable area, WUA) and the density of 13 benthic insect families. Our findings showed that the density of filter feeding and grazing insect taxa, as well as insects classified as obligate erosional zone taxa, declined significantly in the dewatered (treatment) zone (TZ) when 90% of flow was diverted. Density of Ephemeroptera, Plecoptera and Trichoptera (EPT) taxa in the TZ was significantly lower when 90% of water was diverted as compared to density at baseflow or when flow was reduced by 50%. The density of all insects in an upstream reference zone riffle (RZ), where flow was not altered, did not change among experimental periods. Although overall reductions in the density of benthic insects at 90% flow reduction coincided with lower PHABSIM predictions of WUA, we found poor linear correlation between WUA at different flows and the density of the 13 benthic insect families for which WUA was modelled. The low proportion of variation explained by WUA for all families modelled suggests that WUA alone is not an accurate predictor of benthic insect density. Resource managers should consider the potential consequences of water withdrawals to all components of stream communities, including benthic macroinvertebrates. However, caution should be applied when using the PHABSIM technique in groundwater‐fed streams such as Hunt Creek, because most relationships between WUA and benthic insect density were insignificant. Copyright © 2006 John Wiley & Sons, Ltd.     

Evaluation of δD and δ18O as natural markers of invertebrate source environment and dispersal in the middle Mississippi River‐floodplain ecosystem

Movement of invertebrates among large rivers, tributaries, and floodplain lakes or dispersal of adult aquatic insects from riverine or floodplain habitats may provide important subsidies to food webs in receiving habitats. Intensive sampling at habitat interfaces and artificial labelling are two approaches to assess freshwater invertebrate dispersal, but these are difficult to implement at a landscape scale. Natural chemical tracers have been used to track dispersal of fishes and marine invertebrates, but the potential applicability of stable isotope ratios as natural tracers of invertebrate dispersal in freshwater environments has not been assessed. We evaluated stable hydrogen and oxygen isotopes (δD and δ¹⁸O) as natural markers of source environment and dispersal of macroinvertebrates in the middle Mississippi River, tributaries and floodplain wetlands. Water and invertebrates were collected from 12 sites during 2007–2008. Water δD and δ¹⁸O differed among the river, its tributaries, and floodplain wetlands and were strongly correlated with invertebrate δD and δ¹⁸O. Variability in invertebrate δ¹⁸O rendered it ineffective as an indicator of invertebrate source environment. Mean δD of Mississippi River invertebrates differed from δD of invertebrates from floodplain wetlands; δD distinguished invertebrates from these two environments with >80% accuracy. Neither δD nor δ¹⁸O of aquatic insects changed following emergence from their natal site. Preservation method (ethanol or freezing) did not affect invertebrate δD or δ¹⁸O. Invertebrate δD may be a useful natural tracer of natal environment and dispersal in the Mississippi River‐floodplain ecosystem and other freshwater systems where spatial variation in water δD is present. Copyright © 2010 John Wiley & Sons, Ltd.     

Lateral distribution of fishes in the main‐channel trough of a large floodplain river: Implications for restoration

Major river channels have been extensively altered worldwide. The development of restoration strategies for those alterations requires fundamental information, including the use of large deep channels by fishes. We trawled within parallel paths distributed across the width of the main‐channel trough of the Mississippi River to identify how the lateral distribution of fishes responds to variations in flow ranging from 50% to 200% of the annual median, water temperature ranging from 9 to 29°C and commercial shipping traffic ranging from 0 to 9 vessels per day. Among the species we encountered, only shovelnose sturgeon (Scaphirhynchus platorynchus) were persistent channel residents that remained concentrated along the main‐channel centreline regardless of flow, temperature and traffic. Other persistent residents showed no distinct pattern in lateral distribution, concentrated along the deep channel margins or varied in lateral distribution with flow. Surprisingly, large adult bluegill (Lepomis macrochirus), which are conventionally viewed as limnophils, were the second‐most abundant species in our samples and became increasingly abundant within the deep channel trough as flow decreased below the annual median. Clearly, those fishes exploit resources contained in the main channel and are, therefore, better viewed as opportunistic limno‐rheophils. Our results imply the existence of poorly understood food resources in the main channel. We conjecture that re‐creation of free‐flowing secondary channels and features that increase the production and transport of invertebrates in channels can help mitigate adverse effects of channel alteration and commercial shipping. Published in 2009 by John Wiley & Sons, Ltd.     

Applicability of the flood‐pulse concept in a temperate floodplain river ecosystem: thermal and temporal components

Annual growth increments were calculated for blue catfish (Ictalurus furcatus) and flathead catfish (Pylodictis olivaris) from the lower Mississippi River (LMR) to assess hypothesized relationships between fish growth and floodplain inundation as predicted by the Flood‐Pulse Concept. Variation in catfish growth increment was high for all age classes of both species, and growth increments were not consistently related to various measures of floodplain inundation. However, relationships became stronger, and usually direct, when water temperature was integrated with area and duration of floodplain inundation. Relationships were significant for four of six age classes for blue catfish, a species known to utilize floodplain habitats. Though similar in direction, relationships were weaker for flathead catfish, which is considered a more riverine species. Our results indicate the Flood‐Pulse Concept applies more strongly to temperate floodplain‐river ecosystems when thermal aspects of flood pulses are considered. We recommend that future management of the LMR should consider ways to ‘recouple’ the annual flood and thermal cycles. An adaptive management approach will allow further determination of important processes affecting fisheries production in the LMR. Copyright © 2006 John Wiley & Sons, Ltd.     

Nitrogen cycling in large temperate floodplain rivers of contrasting nutrient regimes and management

Hydraulic connection between channels and floodplains (“connectivity”) is a fundamental determinant of ecosystem function in large floodplain rivers. Factors controlling material processing in these rivers depend not only on the degree of connectivity but also on the sediment conditions, nutrient loads, and source. Nutrient cycling in the nutrient‐rich upper Mississippi River (MISS) is relatively well studied, whereas that of less eutrophic tributaries is not (e.g., St Croix River; SACN). We examined components of nitrogen cycling in 2 floodplain rivers of contrasting nutrient enrichment and catchment land use to test the hypothesis that N‐cycling rates will be greater in the MISS with elevated nutrient loads and productivity in contrast to the relatively nutrient‐poor SACN. Nitrate (NO₃^?‐N) concentrations were greatest in flowing habitats in the MISS and often undetectable in isolated backwaters except where groundwater inputs occurred. In the SACN, NO₃^?‐N concentrations were greatest in the flowing backwater where groundwater inputs were high. Ambient nitrification in the MISS was twice that in the SACN and tended to be lowest in the main channel. Denitrification was 3× greater in the MISS than that in the SACN, N‐limited in both rivers. Community production/respiration was >1 in the MISS and likely provisioned labile C to fuel microbial metabolism and dissimilatory NO₃^?‐N reduction, whereas the heterotrophic (production/respiration < 1) nature of the SACN likely limited microbial metabolism and NO₃^?‐N dissimilation. It appears that N‐cycling in the SACN was driven by groundwater, whereas that in the MISS was supported mainly by water column N‐sources.     

The potential role of tributaries as seed sources to an impoundment in Northern Sweden: a field experiment with seed mimics

Fragmentation and flow regulation of rivers by large dams are known to obstruct the longitudinal dispersal of waterborne plant propagules between impoundments, and to affect plant community composition. However, even several decades after a dam has been built, impoundments may still have a relatively species‐rich riparian flora. We hypothesized that free‐flowing tributaries act as the major gene pools for such impoundments, thus alleviating the fragmenting effect large dams have on the main channel. The importance of tributaries as seed sources was tested by releasing wooden seed mimics in three different‐sized (0.22–6.93 m³ s^?1) tributaries of an impoundment in the Ume River in Northern Sweden. In each tributary seed mimics were released, during the spring flood peak, from three points approximately 1, 2 and 3 km upstream the outlet in the impoundment. The importance of a tributary as a seed source increased with tributary size. Of the 9000 released seed mimics 1.5% reached the impoundment; 1.2% of the 9000 originated from the largest tributary and 0.3% from the middle‐sized one. The smallest tributary retained all its mimics. Copyright © 2007 John Wiley & Sons, Ltd.     

Effects of dams in river networks on fish assemblages in non‐impoundment sections of rivers in Michigan and Wisconsin,USA

Regional assessment of cumulative impacts of dams on riverine fish assemblages provides resource managers essential information for dam operation, potential dam removal, river health assessment and overall ecosystem management. Such an assessment is challenging because characteristics of fish assemblages are not only affected by dams, but also influenced by natural variation and human‐induced modification (in addition to dams) in thermal and flow regimes, physicochemical habitats and biological assemblages. This study evaluated the impacts of dams on river fish assemblages in the non‐impoundment sections of rivers in the states of Michigan and Wisconsin using multiple fish assemblage indicators and multiple approaches to distinguish the influences of dams from those of other natural and human‐induced factors. We found that environmental factors that influence fish assemblages in addition to dams should be incorporated when evaluating regional effects of dams on fish assemblages. Without considering such co‐influential factors, the evaluation is inadequate and potentially misleading. The role of dams alone in determining fish assemblages at a regional spatial scale is relatively small (explained less than 20% of variance) compared with the other environmental factors, such as river size, flow and thermal regimes and land uses jointly. However, our results do demonstrate that downstream and upstream dams can substantially modify fish assemblages in the non‐impoundment sections of rivers. After excluding river size and land‐use influences, our results clearly demonstrate that dams have significant impacts on fish biotic‐integrity and habitat‐and‐social‐preference indicators. The influences of the upstream dams, downstream dams, distance to dams, and dam density differ among the fish indicators, which have different implications for maintaining river biotic integrity, protecting biodiversity and managing fisheries. Copyright © 2010 John Wiley & Sons, Ltd.     

Impact of a 100‐year flood on vegetation,benthic invertebrates,riparian fauna and large woody debris standing stock in an alpine floodplain

This paper investigates the impact of a 100‐year flood in May 1999 on community composition and large woody debris standing stock in an alpine floodplain (Isar, Germany). Detailed pre‐flood data sampled from 1993 to 1998 are compared with the situation directly after the flood. In those parts of the Isar floodplain mainly covered with pioneer vegetation prior to flooding, the coverage of unvegetated gravel bars increased by 22% following the flood. However, the flood did not remove larger amounts of older successional vegetation stages (willow thickets, floodplain forest). No significant changes in the benthic invertebrate fauna were recorded. The lowest densities of riparian ground beetles (Carabidae) within the study were recorded one month after the flood. Two months later, the ground beetle densities increased to the highest values ever recorded, indicating the ground beetle's high potential for recolonization. These results highlight the degree of resilience of both the aquatic and the riparian invertebrate fauna. The flood also caused a significant increase in large woody debris standing stock; in one section the number of logs increased tenfold and the volume increased by a factor of 20, leading to the assumption that most woody debris in alluvial flood‐plains is provided by catastrophic events. Copyright © 2004 John Wiley & Sons, Ltd.     

Fish assemblages and biotic integrity of a highly modified floodplain river,the Upper Mississippi,and a large,relatively unimpacted tributary,the Lower Wisconsin

The Upper Mississippi River is a dynamic floodplain river that has been largely transformed by navigational levees and dams since the 1930s. The pools upstream of each dam are lake‐like and only about the upper third of each reach retains a riverine character. In contrast, the Wisconsin River is not managed for commercial navigation and today its lower 149 km represent one of the least‐degraded large river reaches in central North America. Riverine reaches in both the Mississippi and Wisconsin rivers have similar macro‐habitats including numerous islands, large side channels, and connected backwaters and floodplain lakes. In this study, shoreline electrofishing samples were collected during summer 2002 and 2003 to characterize resident fish assemblages. We compared fish species abundance, biomass, and biotic integrity along main and side channel borders between the Upper Mississippi River and the Lower Wisconsin River. We expected that, in the absence of environmental degradation, fish composition and structure would be similar between the Mississippi and Wisconsin rivers, and between channel types within each river. Nonmetric multidimensional scaling and redundancy analysis revealed that fish species in the Mississippi River, unlike in the Wisconsin River, were characteristic of non‐riverine habitats. We consider non‐riverine fish assemblages indicative of environmental impairment. The main and side channel sites in the Mississippi River had more variable fish assemblages than the Wisconsin River. Analyses of fish index of biotic integrity scores showed that environmental condition was excellent for both channel types in the Wisconsin River, whereas in the Mississippi River the side channel was rated good and the main channel only fair. We conclude that differences between the two rivers and between channel types of the Mississippi River are consistent with direct and indirect effects of navigation. This study demonstrates the utility of a fish index of biotic integrity, an inexpensive and rapid bioassessment tool, for detecting change in ecological health on one of the world's largest rivers. Copyright © 2006 John Wiley & Sons, Ltd.     

Integrating remote sensing and species distribution modelling to predict benthic communities in a Great Lakes connecting channel

Species distribution models have become widespread in benthic ecology; however, they have mostly been applied to marine and lentic systems. In this study, we applied a maximum entropy model by using remote sensing‐derived environmental variables to predict the distribution of 4 major benthic communities dominated by Tubificidae, Naididae, Echinogammarus ischnus, and Dreissena spp, respectively, in the lower Niagara River, NY, USA. The model showed very good accuracy for benthic communities with a narrow distribution range (Tubificidae and Naididae) indicated by the area under the curve test values of 0.906 and 0.987, respectively. In contrast, the model showed poor performance for E. ischnus and Dreissena indicated by the low area under the curve values of 0.615 and 0.618, respectively. Both communities are known to cope with a wide variety of environmental factors and habitats, making their accurate predictions difficult using presence‐only data. Our results can further be used to locate important feeding grounds for higher trophic levels, to assess the potential spread of exotic species, and to identify areas for restoration.     

The distribution and turnover of benthic organic matter in a lowland river: influence of hydrology,seston load and impoundment

The standing stocks of benthic organic matter (BOM) and some of its biochemical compounds (particulate organic carbon, particulate nitrogen, protein, and chlorophyll a) were investigated in the upper 12 cm of the sediments at several sampling sites in a free‐flowing and in an impounded river section of the lowland River Spree (Germany). Several environmental variables were recorded, in order to determine their potential influence on the organic matter content in the sediments. It was shown that the organic matter content in the upper sediment layers was mainly determined by the local hydrological regime, which was best reflected by the particle size distribution at the sampling sites. For the deepest investigated sediment strata, no influencing factors could be determined. The amount and quality of suspended matter was of minor importance to sediment composition. Also seasonal effects could not be detected. The impounded river section exhibited less seasonal variation in organic matter storage, as well as shorter carbon turnover lengths, longer carbon turnover times and lower rates of annual organic matter recycling than the free‐flowing river section, which indicates that changes in river hydraulics result in alterations to the organic matter budget. These alterations could be related to the changed mesohabitat composition and to the higher standing stocks of organic matter in the impounded river reach. We conclude that both morphological and hydrological alterations affect the structure and function of running water ecosystems because of their negative effect on the organic matter cycling. Copyright © 2002 John Wiley & Sons, Ltd.     

Benthic macroinvertebrate assemblages in large river secondary channels: Contemporaneous and legacy effects of flow connectivity

In large rivers, secondary channels occur where the main channel is divided by an instream island, forming one or multiple smaller channels outside the main channel. Secondary channels are highly variable in morphometry, flow characteristics, and degree of connectivity to the main channel. Engineered closing structures at the upstream end of most secondary channels restrict inflow from the main channel, resulting in gradients of flow connectivity among secondary channels that vary with river stage. We investigated the relationship of flow connectivity to benthic macroinvertebrate assemblage richness and structure among a series of secondary channels of the Lower Mississippi River. Samples were collected over 2 years at times of high and low river stages. We discovered (1) macroinvertebrate assemblage structure and taxonomic richness varied along the flow connectivity gradient, and (2) there was a legacy effect of prior connection on assemblage structure that lasted up to a year. We contend that for management and restoration planning aimed at conservation of large river biological diversity, an important consideration are the life history requirements of animals utilizing secondary channel habitats.     

Interstitial fauna in newly‐created floodplain canals of a large regulated river

Artificial drainage canals are often dug in large river floodplains to prevent winter inundation when groundwater level increases. Nothing is known about the biodiversity of the interstitial fauna of these artificial aquatic systems. The water chemistry and interstitial fauna of four drainage canals along the River Rhône (dug 11–15 years ago) were sampled in July during 3 years (1995–1997). A total of 53 taxa were found, with both epigean and hypogean organisms, and some rare phreatobites previously considered as absent from this sector of the Rhône. The faunal assemblage is characterized by limited temporal variations between the 3 successive years. Differences in interstitial fauna composition between the four drainage canals were mostly linked to oxygen availability and to heterogeneity in water origin (true ground water or surface water infiltration through embankment). Low oxygen content results in poorly diversified assemblages, which are always dominated by the same small set of species. In contrast, heterogeneity in water origin resulted in elevated faunal diversity. Copyright © 2000 John Wiley & Sons, Ltd.     

Point source effects on density,biomass and diversity of benthic macroinvertebrates in a Mediterranean stream

We sampled benthic macroinvertebrates above and below a point source effluent in La Tordera stream (NE, Spain) over 2001–2002 to assess the effects of nutrient enrichment on the structure, and taxonomic composition of the benthic macroinvertebrate community. Below the point source, discharge, specific conductance and nutrient concentrations were higher than at the upstream reach, while dissolved oxygen (DO) decreased. Macroinvertebrate density was higher at the downstream reach than at the upstream reach on most dates but the two reaches did not differ in macroinvertebrate biomass. On average, taxa richness at the upstream reach was 20% higher than at the downstream reach. Several taxa, especially mayflies, stoneflies and caddisflies, were present only at the upstream reach. Shannon diversity was similar between the two reaches on 50% of the dates. Ordination analysis clearly separated the samples of the upstream reach from the samples of the downstream reach in the first axis and corroborated the effect of the point source on the benthic community. The two reaches followed a similar temporal pattern with respect to the distribution of taxa along the second axis of the ordination analysis. Higher similarities between the two reaches in taxa composition, densities and biomass after the spates of April and May 2002, suggest that flooding events may act as a reset mechanism for benthic communities and play an important role in stream restoration. Copyright © 2007 John Wiley & Sons, Ltd.     

Changes in fish communities of the Phongolo floodplain,Zululand (South Africa) before,during and after a severe drought

The Pongolapoort Dam in Zululand, South Africa has regulated the flow of the Phongolo River to its floodplain downstream since 1970. Ecological surveys of the floodplain fish communities were conducted before (1974–6), during (September 1983) and after (August 1984) a severe drought to assess the response of the fish stocks. During the three study periods the floodplain lake communities varied. Fish populations were markedly reduced during the drought. The redistribution offish on the floodplain after the drought was rapid. Colonization of previously dry lakes was mainly by juvenile fish and the mean size of the fish was lower in these lakes than in the refuge lakes. A few species successfully spawned during the drought, although the natural mortality of the young of the year was probably greater due to increased competition and predation in restricted habitats. Large scale spawning in most species occurred immediately after the drought was broken by a large flood.     

Spatial patterns of fish communities in the Upper Mississippi River System: assessing fragmentation by low‐head dams

We assessed the similarity of fish communities among river reaches to assess community‐level fragmentation by low‐head dams in the Upper Mississippi River System (UMRS). The spatial coverage of standardized electrofishing sampling used in the Long Term Resource Monitoring Program (LTRMP) was extended for three of the six regional trend areas (RTA; pools 4, 13, and the Open River Reach) to include river reaches (outpools) immediately upstream and downstream from the standard RTA from 15 June to 31 October 2000. Additionally, pools 19 and 20 were sampled in September 2000. Cluster analysis and non‐metric multidimensional scaling of community composition and structure data revealed two major groups, upper and lower reaches, and four (for composition) or five (for structure) sub‐groupings of river reaches. In general, all outpools grouped with the nearest RTA for both community composition (no exception) and community structure (one exception). This suggests that fragmentation of fish communities from low‐head dams is minimal. Mantel correlations demonstrated strong inverse association between the similarity of fish communities with the distance between reaches. Habitat variables measured during electrofishing collections were significantly correlated with spatial variation of fish composition and community structure, but provided only marginal improvements to correlations with distance between reaches alone. Furthermore, habitat variability among river reaches also was related to distance between reaches. Determining the extent to which variation of fish communities is related to habitat or demographic processes (e.g. migration, larval drift, source‐sink dynamics) will be challenging for this system. Although low‐head dams on the UMRS may restrict movements for individuals and populations of certain fish species, we found little evidence that these effects have led to substantial, community‐level fragmentation. Copyright © 2006 John Wiley & Sons, Ltd.