Molecular Glue for RNA: Regulating RNA Structure and Function through Synthetic RNA Binding Molecules

We introduce the concept of molecular glues for RNA, in which specific RNA-binding small molecules induce designed structural changes in target functional RNAs, resulting in modulation of the functions. (Z)-NCTS is an RNA-mismatch-binding small molecule that recognizes 5′-r(XGG)-3′/5′-r(XGG)-3′ sequences (X=U or A) and acts as a molecular glue for RNA. The binding of (Z)-NCTS brings two distinct 5′-r(XGG)-3′ domains into contact with each other, and this can result in higher-order structural changes of target RNAs. We applied (Z)-NCTS to induce the formation of a proposed tertiary structure of a ribozyme together with activation of RNA-cleaving ability. The concept of a molecular glue could inspire new small-molecule-based strategies for regulating biological functions: a synthetic small molecule targeting functional RNAs could regulate the RNA structure and function.     

黏滞阻尼器的优化布置及其在高层钢结构加固中的应用

阻尼器优化布置是结构减震设计过程中的重要环节,通常需要通过多次动力响应计算来完成。为此,提出了一种通过结构静力分析确定阻尼器合理布置位置的方法,并能够快速计算出优化方案的附加阻尼比。将该方法应用于一栋位于日本东京都新宿区29层钢结构建筑的减震加固设计中,分析了该建筑的强震观测系统在日本“311地震”中采集到的部分楼层加速度时程数据,并基于分析结果验证了所建立的非线性数值分析模型的可靠性。采用所提方法对结构进行减震加固,得到双向共64个阻尼器的优化布置方案及其附加阻尼比,并通过动力方法对结果进行了验证。同时针对长周期及长持时特性的地震波,对减震结构进行动力弹塑性时程分析,评估其抗震性能。分析结果表明：减震优化方案的减震效果明显,结构整体地震反应和构件损伤较非减震方案都大大减小;减震优化方案有效改善了高层钢结构楼层变形不均匀的情况,层间位移角均满足小于1/100的性能要求;通过减震优化后大部分钢支撑和钢梁的塑性率都降低至小于1。     

Batch foam separation of a soluble protein

Removal of protein dissolved in water by batch foam separation was conducted with using ovalbumin (OA) as a model protein in the light of wastewater treatment reducing organic loading. The removal efficiency had a maximum value near the i.e.p. of OA (pH 4.6); thus, most experiments were conducted at pH 4.6. Typical experimental conditions; superficial gas velocity, U(g): 1.97 x 10(-2)-5.37 x 10(-2)cm/s; initial bulk concentration of OA, C(i): ca. 0.05-0.25 g/L; liquid volume, V: 600 cm(3). A model estimating bulk concentration profile was proposed by taking into account a mass balance of the present system. The model predicted that OA could be removed perfectly, however, was not all removed experimentally. The residual OA concentration of the bulk liquid within the column reached plateau value, which correspond to ca. 18% of the initial OA concentration. The plateau value of the bulk concentration was attained for ca. 100-500 min with U(g)=1.97 x 10(-2)-5.37 x 10(-2)cm/s. Foaming ability test revealed that the foaming limit concentration of OA at pH 4.6 was 9.72 x 10(-3)g/L. These results suggested that OA molecules could be damaged by interaction of bubble surface in the dispersed phase, since there were the residual OA concentrations over the limit concentration. To take account of this phenomena and correct the model, average surface density, X(d), which should convert protein molecule into the denatured protein molecule, was introduced. The corrected model could explain well the time profile of OA bulk concentration.     

Surface durability of powder-forged roller treated by shot peening

To investigate the influence of shot peening on the surface durability of powder-forged rollers, the case-hardened powder-forged rollers with a forging density of 7.5 g/cm³ treated by the single shot peening and the double shot peening were fatigue-tested under a sliding-rolling contact condition. The surface roughness, the surface hardness and the surface compressive residual stress of the rollers were increased by the shot peening. In addition, the pores near the roller surface were deformed by the shot peening. The failure mode of all the test rollers was spalling due to subsurface cracking. The fatigue lives of all the test rollers were improved by the shot peening, and that of the test roller S08, which was shot-peened with the hardest steel shots in this experimental range, was especially improved. The surface durability of the test roller S08 was also most improved by the shot peening. Cracks became difficult to occur and propagate under the roller surface since the pores near the roller surface were deformed by the stronger shot peening. In this study, double shot peening, which generally restrains the increase in surface roughness, was not particularly effective for the improvement in the surface durability of the powder-forged rollers, because the influence of tangential force on fatigue was not always great in a case of subsurface cracking.     

Note: Unshielded bilateral magnetoencephalography system using two-dimensional gradiometers

Magnetoencephalography (MEG) noninvasively measures neuronal activity with high temporal resolution. The aim of this study was to develop a new type of MEG system that can measure bilateral MEG waveforms without a magnetically shielded room, which is an obstacle to reducing both the cost and size of an MEG system. An unshielded bilateral MEG system was developed using four two-dimensional (2D) gradiometers and two symmetric cryostats. The 2D gradiometer, which is based on a low-T(c) superconducting quantum interference device and wire-wound pickup coil detects a magnetic-field gradient in two orthogonal directions, or ?/?x(?(2)B(z)/?z(2)), and reduces environmental magnetic-field noise by more than 50 dB. The cryostats can be symmetrically positioned in three directions: vertical, horizontal, and rotational. This makes it possible to detect bilateral neuronal activity in the cerebral cortex simultaneously. Bilateral auditory-evoked fields (AEF) of 18 elderly subjects were measured in an unshielded hospital environment using the MEG system. As a result, both the ipsilateral and the contralateral AEF component N100m, which is the magnetic counterpart of electric N100 in electroencephalography and appears about 100 ms after the onset of an auditory stimulus, were successfully detected for all the subjects. Moreover, the ipsilateral P50m and the contralateral P50m were also detected for 12 (67%) and 16 (89%) subjects, respectively. Experimental results demonstrate that the unshielded bilateral MEG system can detect MEG waveforms, which are associated with brain dysfunction such as epilepsy, Alzheimer's disease, and Down syndrome.     

Developments in asymmetric hydrogenation from an industrial perspective

Examples of developments in asymmetric hydrogenation from various perspectives, in an effort to improve efficiency, are reported. Discussed in this Account are (1) the improved synthesis of BINAP ligands, (2) the design of SEGPHOS ligands for higher enantioselectivity, (3) a new protocol with fewer reaction steps to synthesize beta-aminoesters, and (4) a novel asymmetric hydrogenation mediated by a copper catalyst.     

Phospholipid polymer hydrogel formed by the photodimerization of cinnamoyl groups in the polymer side chain

We synthesized new polymers with both photocrosslinkability and biocompatibility by a random copolymerization of 4‐(4‐methoxycinnamoyl)phenyl methacrylate and 2‐methacryloyloxyethyl phosphorylcholine. These polymers were used as prepolymers to make a hydrogel by photoirradiation. Gelation began with 5 s of photoirradiation and reached an equilibrium state after 360 s of photoirradiation. The absorption maximum at 347 nm, attributed to the cinnamoyl group, disappeared with the photoirradiation time. That is, dimerization between cinnamoyl groups in the polymer proceeded and formed a hydrogel. The equilibrium water concentration of the hydrogels was more than 90%. Moreover, we succeeded in making a microshape hydrogel on glass by photoirradiation through a photomask. The window shape of the photomask was transferred to the hydrogel that was formed. We concluded that these photocrosslinkable polymers could be useful in preparing microfluidic devices for separating or immobilizing biomolecules and cells. © 2007 Wiley Periodicals, Inc. J Appl Polym Sci 104: 44–50, 2007     

Development of ultra-deep HDS catalyst for production of clean diesel fuels

Cosmo Oil has successfully developed a new CoMo HDS catalyst, C-606A, for production of ultra-low sulfur diesel fuels. This catalyst was prepared by an impregnation method using a solution containing Co, Mo, P, and citric acid on a HY-Al₂O₃. The resulting catalyst air-dried only without calcination. The HDS activity was measured with straight-run light gas oil feedstocks under industrial hydrotreating conditions. C-606A had a three times higher HDS activity compared with the conventional CoMoP/Al₂O₃ catalyst. Commercial operation with C-606A has successfully demonstrated high performance. This catalyst has superior activity, which enables <10-ppm sulfur content in products in a commercial hydrotreater designed to produce 500-ppm sulfur diesel fuels.     

Study of melting and crystallization behavior of polyacrylonitrile using ultrafast differential scanning calorimetry

The thermal behavior of polyacrylonitrile (PAN) has been investigated using X-ray diffraction, differential scanning calorimetry (DSC), and ultrafast DSC. In conventional DSC, it is difficult to prevent the concurrent occurrence of the exothermic reactions of PAN with melting. However, in the ultrafast DSC curve, the exothermic peak due to these reactions disappears over the temperature range 0–400 °C at heating rates above 250 °C s⁻¹. Alternatively, the glass transition and the melting of PAN are observed over the temperature range 109–129 °C and 335–362 °C, respectively. Moreover, upon cooling from the molten state at a rate of −7500 °C s⁻¹, PAN crystallization is observed at 204 °C. These findings were observed repeatedly during heating and cooling measurements. From the extrapolation analysis, the zero-entropy-production melting temperature of PAN is found to lie in the temperature range 320–350 °C. Finally, the equilibrium melting temperature of PAN is estimated to be ca. 465 °C.