Mechanism‐Guided Library Design and Dual Genetic Selection of Synthetic OFF Riboswitches

After the recent discovery of bacterial riboswitches, synthetic riboswitches have been engineered by using natural and artificial RNA aptamers. In contrast to natural riboswitches, the majority of synthetic riboswitches in bacteria reported to date are ON switches that activate gene expression in response to the aptamer ligand. In this study, we adopted a mechanism‐guided approach to design libraries predisposed to contain OFF riboswitches that respond to thiamine pyrophosphate (TPP). The first library design exploited a pseudo‐Shine‐Dalgarno (SD) sequence located near the 3′‐end of the TPP aptamer, which would be less accessible to the ribosome when the aptamer is bound to TPP. In the second library, an SD sequence was strategically placed in the aptamer's P1 stem, which is stabilized upon ligand binding. OFF riboswitches were obtained by dual genetic selection of these libraries. The results underscore the importance of effective library design to achieve desired riboswitch functions.     

Incorporation of benzothiadiazole moiety at junction of polyfluorene–polytriarylamime block copolymer for effective color tuning in organic light emitting diode

Block copolymer consisting of polyfluorene and polytriarylamine with benzothiadiazole moiety at the junction is prepared in order to obtain an orange emitting polymer via Suzuki‐Miyaura followed by Buchwald‐Hartwig coupling reactions. Electroluminescent device fabricated with resulting block copolymer exhibit only orange emission, although slight blue emission is observed in the fluorescent spectrum for the thin film, indicating that benzothiadiazole part plays a role of an effective trap site. Devices based on polyfluorene homopolymer doped with block copolymer (10 wt %) or an orange emitting model compound at the corresponding content of benzotiadiazole unit are also fabricated. The device with the model compound exhibits orange emission with Commission Internationale de l'Éclairage (CIE) coordinate of (0.58, 0.42), whereas that with block copolymer pale orange with the coordinate of (0.44, 0.38). This fact is probably due to the preferential distribution of block copolymer at the vicinity of anode via hydrophilic interaction of trioxyethylene side chains with poly(3,4‐ethylenedioxythiophene):poly(styrene sulfonate). © 2017 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2017 , 134, 45393.     

A Comprehensive Study of the Interaction between Peptidoglycan Fragments and the Extracellular Domain of Mycobacterium tuberculosis Ser/Thr Kinase PknB

The Mycobacterium tuberculosis Ser/Thr kinase PknB is implicated in the regulation of bacterial cell growth and cell division. The intracellular kinase function of PknB is thought to be triggered by peptidoglycan (PGN) fragments that are recognized by the extracytoplasmic domain of PknB. The PGN in the cell wall of M. tuberculosis has several unusual modifications, including the presence of N-glycolyl groups (in addition to N-acetyl groups) in the muramic acid residues and amidation of d -Glu in the peptide chains. Using synthetic PGN fragments incorporating these diverse PGN structures, we analyzed their binding characters through biolayer interferometry (BLI), NMR spectroscopy, and native mass spectrometry (nMS) techniques. The results of BLI showed that muropeptides containing 1,6-anhydro-MurNAc and longer glycan chains exhibited higher binding potency and that the fourth amino acid of the peptide stem, d -Ala, was crucial for protein recognition. Saturation transfer difference (STD) NMR spectroscopy indicated the major involvement of the stem peptide region in the PASTA-PGN fragment binding. nMS suggested that the binding stoichiometry was 1:1. The data provide the first molecular basis for the specific interaction of PGN with PknB and firmly establish PGNs as the effective ligands of PknB.     

Behavior of N-methylcarbamate pesticides during refinement processing of edible oils

The following N-methylcarbamate pesticides, aldicarb, aldicarb sulfoxide, aldicarb sulfone, oxamyl, methomyl, thiodicarb, propoxur, carbofuran, carbosulfan, benfuracarb, bendiocarb, carbaryl, fenobcarb and furathiocarb, were added to soybean oil, each at 5 mg/kg(5 ppm), followed by degumming, alkali refining, bleaching and deodorization for oil refinement. Residual pesticide content in each case was determined immediately after refining. DEGUMMING: Aldicarb, aldicarb sulfoxide, aldicarb sulfone, oxamyl, thiodicarb, carbosulfan, benfuracarb were each found to decrease by as much as 70% by H(3)PO(4) treatment, this being less than 26% noted for the other pesticides. With hot water treatment, the decrease in any one pesticide was less than 52%. ALKALI REFINING: The rate of decrease varied with the pesticide, ranging from 8% to 100%. 200%NaOH were effectively brought about pesticide removal, compared to 125%NaOH. BLEACHING: Aldicarb, aldicarb sulfoxide, aldicarb sulfone, oxamyl, methomyl, thiodicarb, carbosulfan, benfuracarb, bendiocarb and furathiocarb each decreased by more than 80% with activated clay containing activated charcoal. Carbaryl decreased remarkably by this clay. Pesticide removal in all cases was at less than 30%. DEODORIZATION: 40% Furathiocarb, 14% carbosulfan, 11% benfuracarb and 3% carbofuran could still be detected subsequent to deodorization at 260 degrees C while all other pesticide amounts were too small to permit quantitative detection. Degumming with H(3)PO(4) and bleaching with activated clay caused the conversion of carbosulfan and benfuracarb into carbofuran. Carbofuran and furathiocarb may thus possibly still remain in the oil following the above 4 refinement processes.     

Performance analysis of shaft generator systems

A shaft generator system supplies electrical power required in a ship by using a part of the power produced by the main engine. Since the speed of the main engine can vary over a wide range, an externally commutated thyristor inverter, which has high reliability, is generally used to produce ac power with constant voltage and frequency. In this paper, a set of system equations, by which the total harmonic distortion of the output voltage, for example, can be estimated, is derived first. The effects of leading angle of the inverter and the reactance of ac reactor located in the output side of the inverter on the system performances and the operation limit of the system are then clarified. Moreover, a way of taking the system losses into account is proposed to obtain precise calculation results. Finally, the apparent power for the synchronous condenser to provide reactive power in the system is discussed. © 2000 Scripta Technica, Electr Eng Jpn, 131(3): 70–79, 2000     

Large eddy simulation of swirling jet in a bluff-body burner

The large eddy simulation (LES) is applied to an unconfined swirling flow of an air surrounding a bluff-body having a central jet of air, and the complicated flowfield that involves the recirculation and vortex breakdown is investigated. The Smagorinsky model is used as the sub-grid scale model. The results of the present numerical simulation are compared with the experimental data of the mean and stochastic root mean square (RMS) variations of two velocity components. Although the inflow conditions are specified in a simple manner, the obtained numerical results are in reasonable agreement with the experiments, except for a part of RMS variation values near downstream of the bluff body. The present numerical calculations can successfully reproduce the two characteristics of the flow, i.e., an upstream recirculation zone established just downstream of the burner plane and the additional recirculation zone established at the more downstream location.     

Impact of Dynamic Interlayer Interactions on Thermal Conductivity of Ca3Co4O9

The phonon thermal conductivity of misfit-layered Ca₃Co₄O₉ has been calculated by perturbed molecular dynamics using a classical force field. Detailed numerical analyses reveal that, in spite of its smaller cross-sectional area, the CoO₂ layer transports more heat than the thicker rock salt (RS) layer, although its local thermal conduction is more suppressed than in another layered cobaltite, Na _x CoO₂. The origins of these differences have been elucidated through careful examination of the atomic arrangements in each layer. Since thermal conduction in the RS layer can be reduced without deteriorating electronic properties for which the CoO₂ layer is responsible, it is suggested that the RS layer should be modified to further suppress the overall in-plane thermal conductivity. Computational experiments with increasing number of Ca–O planes in the RS layer showed the opposite trend to what can be predicted based on the misfit between two dissimilar layers. Further analyses to reveal the origin of these unexpected results provide yet another strategy to further decrease the thermal conductivity, namely to control the dynamic interference between atoms across the interface between two layers.     

Deficiency of IL-5 receptor alpha-chain selectively influences the development of the common mucosal immune system independent IgA-producing B-1 cell in mucosa-associated tissues

Deletion of IL-5R alpha-chain (IL-5R alpha-/-) selectively influenced the mucosal IgA responses in vivo. While levels of IgA in mucosal secretions were more reduced in IL-5R alpha-/- mice than in wild-type mice, the levels of IgA in serum were not changed. The frequency of IgA-producing cells was reduced in mucosal effector sites (e.g., intestinal lamina propria and nasal passage), but not in inductive sites such as Payer's patches and nasal-associated lymphoreticular tissues in IL-5R alpha-/- mice. IgA-committed (surface IgA+; sIgA+) B-1 cells mainly resided in mucosal effector tissues, while conventional sIgA+ B (B-2) cells formed in mucosal inductive sites of wild-type mice. In contrast, in the effector tissue of IL-5R alpha-/- mice, sIgA+ B-1 cells, but not sIgA+ B-2 cells in the inductive site, were significantly reduced. IL-5R alpha was more expressed on sIgA+ B-1 cells than was IL-6R, while both IL-5R alpha and IL-6R were expressed on sIgA+ B-2 cells in wild-type mice. sIgA+ B-1 cells produced high levels of IgA with rIL-5 rather than of rIL-6 in vitro. Taken together, the findings suggest that the IL-5/IL-5R signaling pathway is critically important for the development of common mucosal immune system independent sIgA+ B-1 cell in mucosal effector tissues in vivo.     

Highly Flexible MoS(2) Thin-Film Transistors with Ion Gel Dielectrics

Molybdenum disulfide (MoS(2)) thin-film transistors were fabricated with ion gel gate dielectrics. These thin-film transistors exhibited excellent band transport with a low threshold voltage (<1 V), high mobility (12.5 cm(2)/(V·s)) and a high on/off current ratio (10(5)). Furthermore, the MoS(2) transistors exhibited remarkably high mechanical flexibility, and no degradation in the electrical characteristics was observed when they were significantly bent to a curvature radius of 0.75 mm. The superior electrical performance and excellent pliability of MoS(2) films make them suitable for use in large-area flexible electronics.