New Beta-lactamases in Candidate Phyla Radiation: Owning Pleiotropic Enzymes Is a Smart Paradigm for Microorganisms with a Reduced Genome

The increased exploitation of microbial sequencing methods has shed light on the high diversity of new microorganisms named Candidate Phyla Radiation (CPR). CPR are mainly detected via 16S rRNA/metabarcoding analyses or metagenomics and are found to be abundant in all environments and present in different human microbiomes. These microbes, characterized by their symbiotic/epiparasitic lifestyle with bacteria, are directly exposed to competition with other microorganisms sharing the same ecological niche. Recently, a rich repertoire of enzymes with antibiotic resistance activity has been found in CPR genomes by using an in silico adapted screening strategy. This reservoir has shown a high prevalence of putative beta-lactamase-encoding genes. We expressed and purified five putative beta-lactamase sequences having the essential domains and functional motifs from class A and class B beta-lactamase. Their enzymatic activities were tested against various beta-lactam substrates using liquid chromatography-mass spectrometry (LC-MS) and showed some beta-lactamase activity even in the presence of a beta-lactamase inhibitor. In addition, ribonuclease activity was demonstrated against RNA that was not inhibited by sulbactam and EDTA. None of these proteins could degrade single- and double-stranded-DNA. This study is the first to express and test putative CPR beta-lactamase protein sequences in vitro. Our findings highlight that the reduced genomes of CPR members harbor sequences encoding for beta-lactamases known to be multifunction hydrolase enzymes.     

A Multistage In Silico Study of Natural Potential Inhibitors Targeting SARS-CoV-2 Main Protease

Among a group of 310 natural antiviral natural metabolites, our team identified three compounds as the most potent natural inhibitors against the SARS-CoV-2 main protease (PDB ID: 5R84), M^pro. The identified compounds are sattazolin and caprolactin A and B. A validated multistage in silico study was conducted using several techniques. First, the molecular structures of the selected metabolites were compared with that of GWS, the co-crystallized ligand of M^pro, in a structural similarity study. The aim of this study was to determine the thirty most similar metabolites (10%) that may bind to the M^pro similar to GWS. Then, molecular docking against M^pro and pharmacophore studies led to the choice of five metabolites that exhibited good binding modes against the M^pro and good fit values against the generated pharmacophore model. Among them, three metabolites were chosen according to ADMET studies. The most promising M^pro inhibitor was determined by toxicity and DFT studies to be caprolactin A (292). Finally, molecular dynamics (MD) simulation studies were performed for caprolactin A to confirm the obtained results and understand the thermodynamic characteristics of the binding. It is hoped that the accomplished results could represent a positive step in the battle against COVID-19 through further in vitro and in vivo studies on the selected compounds.     

Regulation of Cell Signaling Pathways and Non-Coding RNAs by Baicalein in Different Cancers

Landmark discoveries in molecular oncology have provided a wide-angle overview of the heterogenous and therapeutically challenging nature of cancer. The power of modern ‘omics’ technologies has enabled researchers to deeply and comprehensively characterize molecular mechanisms underlying cellular functions. Interestingly, high-throughput technologies have opened new horizons for the design and scientific fool-proof evaluation of the pharmacological properties of targeted chemical compounds to tactfully control the activities of the oncogenic protein networks. Groundbreaking discoveries have galvanized the expansion of the repertoire of available pharmacopoeia to therapeutically target a myriad of deregulated oncogenic pathways. Natural product research has undergone substantial broadening, and many of the drugs which constitute the backbone of modern pharmaceuticals have been derived from the natural cornucopia. Baicalein has gradually gained attention because of its unique ability to target different oncogenic signal transduction cascades in various cancers. We have partitioned this review into different sub-sections to provide a broader snapshot of the oncogenic pathways regulated by baicalein. In this review, we summarize baicalein-mediated targeting of WNT/β-catenin, AKT/mTOR, JAK/STAT, MAPK, and NOTCH pathways. We also critically analyze how baicalein regulates non-coding RNAs (microRNAs and long non-coding RNAs) in different cancers. Finally, we conceptually interpret baicalein-mediated inhibition of primary and secondary growths in xenografted mice.     

Helicopter radar return analysis: Estimation and blade number selection

The problem of helicopter parameter estimation and blade number selection is addressed. The parameters are estimated based on Maximum Likelihood methods and the corresponding Cramér-Rao bounds are derived. To avoid ambiguities in blade number estimation, we apply information theoretic criteria for blade number selection incorporating alternate penalty functions. We assume that a clutter filter essentially removes all of the clutter and also part of the signal returns, lowering the effective signal-to-noise-ratio. The fractional Fourier transform is used to separate the combined tail and main rotor signals into two different returns, allowing initial estimates of their corresponding rotor parameters. The proposed technique is validated by using returns from a helicopter observed experimentally with a pulse-Doppler radar.     

Design,Construction, and Installation of Movable Electrode Biasing System on Tokamak

The first results of the movable electrode biasing experiments performed on the IR-T1 tokamak are presented. For this purpose, a movable electrode biasing system was designed, constructed, and installed on the IR-T1 tokamak, and then the positive voltage applied to an electrode inserted inside the tokamak limiter and the plasma current, poloidal and radial components of the magnetic fields, loop voltage, and diamagnetic flux in the absence and presence of the biased electrode were measured. Results compared and discussed.     

Effect of Humidity on NPK Fertilizer Drying

ABSTRACT

The drying process within rotary coolers during the manufacture of granular NPK fertilizer plays an important role in the production of fertilizer granules possessing both a low moisture content and low caking propensity. A theory for fertilizer drying has been developed which takes into account the low critical relative humidity of complex fertilizer found at high temperature. The theory proposes that the gradient between the partial vapour pressure of moisture in the air and the vapour pressure moisture adjacent to the surface of the fertilizer granule, is the rate controlling stage in the drying of hot granular fertilizer rather than the internal diffusion of moisture within the particle.     

Synthesis of Boron Nitride Microtubes and Formation of Boron Nitride Nanosheets

Boron nitride microtubes are synthesized in a dual zone quartz tube furnace at 1200°C with ammonia as a reaction atmosphere. Field emission scanning electron microscopy (FE-SEM) results show a unique cone-like morphology of the tubes with larger internal space and thin walls structure. The diameters of the tubes were found to be in the range of 1 to ～2 µm with the walls thickness estimated to be from 10 to 100 nm. XPS survey shows N 1 s and B 1 s peaks at 398.7 and 191 eV, respectively, that represent h-BN in the sample. Raman spectroscopy indicates a high-intensity peak at 1372.53 (cm^?1) that corresponds to the E_2g mode of h-BN. Along with the novel tubular morphology of boron nitride microtubes, the present work also explains a mechanism for the formation of boron nitride nanosheets (from boron nitride microtubes) found in the FE-SEM results of the current sample.     

Characterization of Biogenic Silica Generated by Thermo Chemical Treatment of Rice Husk

This study presents two routes to produce amorphous silica from an Egyptian rice husk under conditions optimized for least environmental impact and low cost. The first route includes thoroughly washing of the husk sample with water, dry milling and leaching with citric acid. The leaching process was applied in two stages, that is, at 323 K for 180 min and then at 353 K for 60 min. After washing and drying, the leached sample was subjected to a heat treatment in a muffles furnace at four sequential steps. The second route includes all the previously mentioned steps, except the citric acid leaching. The final products were characterized using x-ray fluorescence analysis, carbon content analysis, x-ray diffraction, differential thermal analysis, nitrogen adsorption, mercury intrusion, and scanning electron microscopy. The results show that the citric acid leaching has many advantages with respect to silica yield and porosity as well.