High Resolution Structure of the Mature Capsid of Ralstonia solanacearum Bacteriophage ϕRSA1 by Cryo-Electron Microscopy

The ϕRSA1 bacteriophage has been isolated from Ralstonia solanacearum, a gram negative bacteria having a significant economic impact on many important crops. We solved the three-dimensional structure of the ϕRSA1 mature capsid to 3.9 Å resolution by cryo-electron microscopy. The capsid shell, that contains the 39 kbp of dsDNA genome, has an icosahedral symmetry characterized by an unusual triangulation number of T = 7, dextro. The ϕRSA1 capsid is composed solely of the polymerization of the major capsid protein, gp8, which exhibits the typical “Johnson” fold first characterized in E. coli bacteriophage HK97. As opposed to the latter, the ϕRSA1 mature capsid is not stabilized by covalent crosslinking between its subunits, nor by the addition of a decoration protein. We further describe the molecular interactions occurring between the subunits of the ϕRSA1 capsid and their relationships with the other known bacteriophages.     

Measurement of group refractive index wavelength dependence using a low-coherence tandem interferometer

A technique for the measurement of the group refractive index wavelength dependence of optical materials using a low-coherence tandem interferometer and a spectrometer is proposed. Four channeled spectra resulting from interferences of light beams from different pairs of optical paths are used for the calculation of optical path differences. The group refractive index wavelength dependence is calculated from these optical path differences generated from the sample under measurement. No a priori information of the geometric thickness of a sample is required. The wavelength dependence of the group refractive index of the samples BK7 parallel plate of 5.200 and 10.025 mm from 675 to 850 nm is experimentally measured with an accuracy of the order of 10(-5) and a repeatability of the order of 10(-9).     

Development of effective detection method for Coxiella burnetii in mayonnaise by real-time PCR and investigation of C. burnetii contamination in commercial mayonnaise in Tokyo

A PCR method for the effective detection of Coxiella burnetii in commercially available mayonnaise was developed. Sample preparations were isolated from 50 g portions of each mayonnaise product by four successive extraction steps in phosphate buffer with 2.0 M NaCl. These extracts were then centrifuged at 20,000 x g for 60 min. DNA was isolated from the solution containing the precipitate with a commercial kit, and amplified quantitatively using real-time PCR that targeted the com1 region of C. burnetii. The recoveries of C. burnetii from 2 kinds of commercial mayonnaise specimens, with a baseline control of 1 x 10(7) particles of the Nine Mile phase II strain, were 85.0 +/- 6.0% and 72.0 +/- 0.4%, respectively. The determination limit of this method was 500 C. burnetii particles per 50 g of mayonnaise. The DNA specimens isolated from 50 different commercial mayonnaise samples sold in Tokyo using this method were amplified using both nested PCR and real-time PCR. No contamination by C. burnetii was detected in any of the mayonnaise samples.     

Effect of Yb concentration on optical properties of Yb:CaF2 transparent ceramics

In Yb:CaF₂, the coordination of Yb³⁺ in the CaF₂ lattice determines the spectroscopic properties that make Yb:CaF₂ a good candidate for high power laser applications. In this work, we measure the optical absorption, emission, and fluorescence lifetime of 0.1, 1, 5, and 10 at% Yb:CaF₂ ceramics to determine whether Yb³⁺ substitutes as hexamer clusters giving rise to the tenability and long fluorescent lifetime observed in Yb:CaF₂ single crystals. Absorption and emission spectra show that the concentration of Yb³⁺ present in hexamer clusters, as opposed to isolated ions, increases with increasing Yb³⁺ content. Fluorescence lifetime also increases with increasing Yb³⁺ content. Laser testing on a 1 at% Yb:CaF₂ transparent ceramic demonstrates that these materials are viable laser gain media.     

Inhibition of mammary tumor growth using lysyl oxidase-targeting nanoparticles to modify extracellular matrix

A cancer nanotherapeutic has been developed that targets the extracellular matrix (ECM)-modifying enzyme lysyl oxidase (LOX) and alters the ECM structure. Poly(d,l-lactide-co-glycolide) nanoparticles (～220 nm) coated with a LOX inhibitory antibody bind to ECM and suppress mammary cancer cell growth and invasion in vitro as well as tumor expansion in vivo, with greater efficiency than soluble anti-LOX antibody. This nanomaterials approach opens a new path for treating cancer with higher efficacy and decreased side effects.     

Deposition of boron doped DLC films on TiNb and characterization of their mechanical properties and blood compatibility

Abstract

Diamond-like carbon (DLC) material is used in blood contacting devices as the surface coating material because of the antithrombogenicity behavior which helps to inhibit platelet adhesion and activation. In this study, DLC films were doped with boron during pulsed plasma chemical vapor deposition (CVD) to improve the blood compatibility. The ratio of boron to carbon (B/C) was varied from 0 to 0.4 in the film by adjusting the flow rate of trimethylboron and acetylene. Tribological tests indicated that boron doping with a low B/C ratio of 0.03 is beneficial for reducing friction (μ = 0.1), lowering hardness and slightly increasing wear rate compared to undoped DLC films. The B/C ratio in the film of 0.03 and 0.4 exhibited highly hydrophilic surface owing to their high wettability and high surface energy. An in vitro platelet adhesion experiment was conducted to compare the blood compatibility of TiNb substrates before and after coating with undoped and boron doped DLC. Films with highly hydrophilic surface enhanced the blood compatibility of TiNb, and the best results were obtained for DLC with the B/C ratio of 0.03. Boron doped DLC films are promising surface coatings for blood contacting devices.     

Multivariate curve resolution analysis on the multi-component water sorption process into a poly(2-methoxyethyl acrylate) film

In our previous study, sorption process of water into a biocompatible polymer film, poly(2-methoxyethyl acrylate) (PMEA) was monitored by time-resolved in situ attenuated total reflection infrared (ATR-IR) spectroscopy [S. Morita, et al., Langmuir 23, 3750 (2007)]. In the present study, noisy and heavily overlapped O-H stretching vibrational bands of diffusing water have been analyzed from the series spectra where the spectral shapes change irregularly with time. In spite of these complications, a powerful spectral analysis technique, multivariate curve resolution (MCR) by means of alternating least squares (ALS), yielded smooth and meaningful pure component spectra and detailed kinetic sorption profiles of each component, excluding noise. Ordinary smoothing techniques and Gaussian curve fitting would not achieve these significant results. The quantification of the kinetic parameters such as amplitudes (a) and relaxation time constants (tau) is significant for the systematic development of biocompatible materials and also for revealing the mechanisms of biocompatibility of a material. Moreover, the ratios of coefficients of each component at saturation corresponded well to the values obtained by Tanaka et al. measured by gravimetric analysis. This study is the first to report the detailed concentration profile of each water component whose sorption kinetics is discussed comprehensively.     

Growth of Cu2ZnSnS4 thin films on Si (100) substrates by multisource evaporation

Cu₂ZnSnS₄ films were grown on Si (100) by vacuum evaporation using elemental Cu, Sn, S and binary ZnS as sources. X-ray diffraction patterns of films grown at different substrate temperatures indicated that polycrystalline growth was suppressed and the orientational growths were relatively induced in a film grown at higher temperatures. Tetragonal structure of Cu₂ZnSnS₄ films was confirmed by studying RHEED patterns. The existence of c-axis ([001] direction) growth, two kinds of a-axis (〈100〉 direction) growth and four kinds of {112} twins which can be classified as two symmetrical pairs is proposed. Broad emissions at around 1.45 eV and 1.31 eV were observed in the photoluminescence spectrum measured at 13 K.     

Fracture- and Indentation-Induced Structural Changes of Sodium Borosilicate Glasses

It is known that indentation using a diamond indenter induces permanent densification to result in plastic or inelastic deformation of glass. However, it is still unclear whether a high tensile stress causes such a structural change or not. In this study, fracture- and indentation-induced structural changes of glasses with the compositions of 20 Na₂O − 40x B₂O₃ – (80−40x) SiO₂ (in mol%, x = 0, 0.5, 1, 1.5) are investigated. Two-point bending tests of the glass fibers are performed to apply a high tensile stress to the glasses, and Vickers indentation tests of the glasses are also carried out for comparison. The structural change of the glass is evaluated by using Raman spectroscopy. It is elucidated that a tensile side of the fractured fiber for every composition shows a permanent structural change, which is characterized by a lower wave number shift of Raman peak assigned to the Si-O-Si bending vibration mode. It is also found that the behaviors of Raman peaks of the fractured fiber are opposite to those of the indented glass under a high compressive stress.