TUNEL Assay: A Powerful Tool for Kidney Injury Evaluation

Terminal deoxynucleotidyl transferase dUTP nick-end labeling (TUNEL) assay is a long-established assay used to detect cell death-associated DNA fragmentation (3’-OH DNA termini) by endonucleases. Because these enzymes are particularly active in the kidney, TUNEL is widely used to identify and quantify DNA fragmentation and cell death in cultured kidney cells and animal and human kidneys resulting from toxic or hypoxic injury. The early characterization of TUNEL as an apoptotic assay has led to numerous misinterpretations of the mechanisms of kidney cell injury. Nevertheless, TUNEL is becoming increasingly popular for kidney injury assessment because it can be used universally in cultured and tissue cells and for all mechanisms of cell death. Furthermore, it is sensitive, accurate, quantitative, easily linked to particular cells or tissue compartments, and can be combined with immunohistochemistry to allow reliable identification of cell types or likely mechanisms of cell death. Traditionally, TUNEL analysis has been limited to the presence or absence of a TUNEL signal. However, additional information on the mechanism of cell death can be obtained from the analysis of TUNEL patterns.     

The Functional Role of Loops and Flanking Sequences of G-Quadruplex Aptamer to the Hemagglutinin of Influenza a Virus

Nucleic acid aptamers are generally accepted as promising elements for the specific and high-affinity binding of various biomolecules. It has been shown for a number of aptamers that the complexes with several related proteins may possess a similar affinity. An outstanding example is the G-quadruplex DNA aptamer RHA0385, which binds to the hemagglutinins of various influenza A virus strains. These hemagglutinins have homologous tertiary structures but moderate-to-low amino acid sequence identities. Here, the experiment was inverted, targeting the same protein using a set of related, parallel G-quadruplexes. The 5′- and 3′-flanking sequences of RHA0385 were truncated to yield parallel G-quadruplex with three propeller loops that were 7, 1, and 1 nucleotides in length. Next, a set of minimal, parallel G-quadruplexes with three single-nucleotide loops was tested. These G-quadruplexes were characterized both structurally and functionally. All parallel G-quadruplexes had affinities for both recombinant hemagglutinin and influenza virions. In summary, the parallel G-quadruplex represents a minimal core structure with functional activity that binds influenza A hemagglutinin. The flanking sequences and loops represent additional features that can be used to modulate the affinity. Thus, the RHA0385–hemagglutinin complex serves as an excellent example of the hypothesis of a core structure that is decorated with additional recognizing elements capable of improving the binding properties of the aptamer.     

Adaptive Synthesis of Functional Amphiphilic Dendrons as a Novel Approach to Artificial Supramolecular Objects

Supramolecular structures, such as micelles, liposomes, polymerosomes or dendrimerosomes, are widely studied and used as drug delivery systems. The behavior of amphiphilic building blocks strongly depends on their spatial distribution and shape of polar and nonpolar component. This report is focused on the development of new versatile synthetic protocols for amphiphilic carbosilane dendrons (amp-CS-DDNs) capable of self-assembly to regular micelles and other supramolecular objects. The presented strategy enables the fine modification of amphiphilic structure in several ways and also enables the facile connection of a desired functionality. DLS experiments demonstrated correlations between structural parameters of amp-CS-DDNs and the size of formed nanoparticles. For detailed information about the organization and spatial distribution of amp-CS-DDNs assemblies, computer simulation models were studied by using molecular dynamics in explicit water.     

Competitive transport of hydrochloric acid and zinc chloride through polymeric anion‐exchange membrane

Competitive transport of hydrochloric acid and zinc chloride has been investigated in a two‐compartment mixed cell with an anion‐exchange membrane Neosepta‐AFN developed and produced by Tokuyama Soda Co. These experiments have proved that hydrochloric acid permeates well through the membrane used but, on the other hand, zinc chloride is not effectively rejected. The flux of zinc chloride has been found to be increasing with increasing acid and salt concentrations. Furthermore, it has been found that it is approximately one order of magnitude higher than that found in the case of simultaneous transport of sulfuric acid and zinc sulfate through the same membrane. The further calculations concerning the ionic equilibria with sorption isotherms for the HCl? ZnCl₂ system, which have been measured experimentally, have revealed that high flux of ZnCl₂ is due to the fact that a considerable amount of zinc chloride in the membrane is in the form of ZnCl₃^? complex, which is relatively small and passes well through this membrane. © 2006 Wiley Periodicals, Inc. J Appl Polym Sci 101: 1391–1397, 2006     

Toxic Effects of the Major Components of Diesel Exhaust in Human Alveolar Basal Epithelial Cells (A549)

We investigated the toxicity of benzo[a]pyrene (B[a]P), 1-nitropyrene (1-NP) and 3-nitrobenzanthrone (3-NBA) in A549 cells. Cells were treated for 4 h and 24 h with: B[a]P (0.1 and 1 μM), 1-NP (1 and 10 μM) and 3-NBA (0.5 and 5 μM). Bulky DNA adducts, lipid peroxidation, DNA and protein oxidation and mRNA expression of CYP1A1, CYP1B1, NQO1, POR, AKR1C2 and COX2 were analyzed. Bulky DNA adducts were induced after both treatment periods; the effect of 1-NP was weak. 3-NBA induced high levels of bulky DNA adducts even after 4-h treatment, suggesting rapid metabolic activation. Oxidative DNA damage was not affected. 1-NP caused protein oxidation and weak induction of lipid peroxidation after 4-h incubation. 3-NBA induced lipid peroxidation after 24-h treatment. Unlike B[a]P, induction of the aryl hydrocarbon receptor, measured as mRNA expression levels of CYP1A1 and CYP1B1, was low after treatment with polycyclic aromatic hydrocarbon (PAH) nitro-derivatives. All test compounds induced mRNA expression of NQO1, POR, and AKR1C2 after 24-h treatment. AKR1C2 expression indicates involvement of processes associated with reactive oxygen species generation. This was supported further by COX2 expression induced by 24-h treatment with 1-NP. In summary, 3-NBA was the most potent genotoxicant, whereas 1-NP exhibited the strongest oxidative properties.     

RP-HPLC/MS-APCI Analysis of Branched Chain TAG Prepared by Precursor-Directed Biosynthesis with <Emphasis Type="Italic">Rhodococcus</Emphasis><Emphasis Type="Italic">erythropolis</Emphasis>

Reversed phase liquid chromatography–atmospheric pressure chemical ionization mass spectrometry (RP-HPLC/MS-APCI) was used to analyze both synthetic triacylglycerols (TAG) having 1–3 branched fatty acids (FA) in the molecule, and natural TAG prepared by precursor directed biosynthesis from valine, leucine and isoleucine and the corresponding branched short-chain acids in cultivations of Rhodococcus erythropolis. The technique made it possible to identify and quantify TAG differing in a single branched-chain FA. Altogether 11 TAG were synthesized, out of which 8 were synthesized stereospecifically. Branched- and straight-chain-TAG were separated and identified while TAG differing only in iso or anteiso FA could not be separated. The APCI mass spectra of iso-, anteiso- and straight-chain TAG were completely identical. The natural material was found to contain 19 TAG having at least one branched FA. Cultivation on six different substrates showed, apart from the presumed and common incorporation of precursors to iso-even, iso-odd and anteiso FA, also some unusual features such as an increase in the content of odd-FA after the addition of Val (attributed to catabolism of Val to propionate) or the appearance of branched monounsaturated FA. The two-sample paired t test, when applied to the TAG, showed that only the pair Val and isobutyrate differ in incorporation into FA—see, e.g. proportions of M/M/O and brM/brM/O (1.2:1.2 and 1.9:1.2, respectively). Also, incorporation of Val (isobutyrate) yielded only TAG having two branched FA in the molecule, whereas Leu and Ile (isovalerate and 2-methyl-butyrate) gave only TAG with a single branched FA in the molecule.     

Dynamics of Plasma and Urinary Extracellular DNA in Acute Kidney Injury

Early and reliable markers of acute kidney injury (AKI) are essential. One such candidate marker of tissue damage is extracellular DNA (ecDNA). The aim of our present study is to describe the unknown dynamics of ecDNA in an animal model of AKI. Glycerol-induced nephropathy was used to model AKI in adult male Wistar rats (n = 93). Blood and urine samples were collected 1, 3, and 24 h after model induction. Total ecDNA and its sub-cellular origin was assessed. In the plasma, total ecDNA and nuclear ecDNA were significantly increased in the AKI group already after 1 h (160% and 270%, respectively, p = 0.02 and p = 0.04). Both nuclear and mitochondrial ecDNA were higher after 3 h (180% and 170%, respectively, p = 0.002 and p = 0.005). Urinary ecDNA concentrations in the AKI group were significantly increased only 24 h after model induction (130% for total ecDNA, p = 0.009; 210% for nuclear ecDNA, p = 0.02; and 200% for mitochondrial ecDNA, p = 0.0009). Our results indicate that plasma ecDNA has the potential to serve as an early and sensitive, albeit non-specific marker of AKI. Further studies should elucidate the source of ecDNA and the dynamics of ecDNA in other animal models of AKI and patients with AKI.     

Microwave-assisted synthesis of carboxymethylcellulose – based polymeric surfactants

Summary Carboxymethylcellulose (CMC, DS_CM = 1) was partially hydrophobized in order to prepare polymeric surfactants by the transesterification reaction using the methyl ester of the fatty acid complex of rapeseed oil (MERO). The chemical modification was performed in different reaction media (i) DMF/TSA and (ii) H₂O/DMF with and without K₂CO₃ as catalyst, at various reaction conditions and using microwave radiation with controlled power as heating source. The obtained MERO-hydrophobized CMC (MH-CMC) comprising mixed fatty acyl esters were characterized by FT-IR and NMR spectroscopic techniques, which indicated a very low degree of esterification (DS < 0.1). The derivatives showed, in spite of moderate surface tension-lowering effects, excellent emulsifying activity for ‘oil in water’ type emulsions as well as good performance properties including washing power and antiredeposition efficiency. The results suggested that surface-active MH-CMC derivatives can be prepared under microwave heating at reaction times in the range of several minutes, what is a great advantage in comparison to transesterification reactions lasting up to 6 h at conventional heating. The novel CMC esters represent biodegradable polymeric surfactants with potential applications in manufacture of consumer products and in industrial processes.     

Of Coffee Shops and Parking Lots: Considering Matters of Space and Place in the Use of Public Wi-Fi

Wireless local area networks – or Wi-Fi networks – are proliferating in some societies. Our interest in this exploratory essay is to illustrate how ostensibly free, publicly-accessible Wi-Fi requires users to apply conventional understandings of space and place (particularly commercial spaces and places) as they make sense of some ambiguities about proper use in those places. We show, through an examination of the metaphorical terms used to describe Wi-Fi, how spatial notions are employed in an attempt to define ownership of the signal and rights to its use. We consider how place-behaviors require evaluation of legitimacy of users in public places and of hospitality of Wi-Fi providers. We observe that commercial interests underpin notions of ownership, legitimacy and hospitality of social actors in public places like coffee shops and parking lots. As researchers considering matters of participation in virtual places, we must first have some appreciation for the normative constraints and conventions that govern the commercial public places in which users access “free” Wi-Fi.     

The effects of drink-driving checkpoints on crashes—A meta-analysis

A meta-analysis has been conducted on the effects on crashes of DUI-checkpoints (DUI, driving under the influence). The results indicate that crashes involving alcohol are reduced by 17% at a minimum and that all crashes, independent of alcohol involvement, are reduced by about 10–15%. In a moderator analysis the effects of a number of factors that may affect the effectiveness of DUI-checkpoints were investigated by means of subgroup analyses and meta-regression. Those moderator variables that were found to be most relevant, are the time period studied, country, and study design. DUI-checkpoints were found to be most effective during the first half year. Australian checkpoints were found to be more effective than checkpoints in other countries. Smaller crash reductions were found in studies that have applied a control group than in other studies. Testing all drivers who are stopped at a checkpoint may improve the effectiveness of DUI-checkpoints. The results do not indicate that DUI-checkpoints have greater effects on more severe crashes or that the use of paid publicity improves the effectiveness. Most likely there are further factors that affect the effectiveness of DUI-checkpoints that could not be investigated in the present analysis.