Status of non-indigenous benthic invertebrates in the Duluth–Superior Harbor and the role of sampling methods in their detection

As part of a study to develop recommendations for non-indigenous species (NIS) monitoring in Great Lakes areas at risk of invasion, we conducted intensive sampling in the Duluth–Superior Harbor and lower St. Louis River in 2005 and 2006. Of the ~ 240 benthic invertebrate taxa identified, 19 were non-indigenous, including 8 first detection records for this system: New Zealand mud snail Potamopyrgus antipodarum; African/Asian-origin cladoceran Daphnia lumholtzi; Eurasian-origin amphipod Echinogammarus ischnus; Eurasian-origin bivalves Dreissena bugensis, Pisidium henslowanum and Pisidium supinum; and possibly range expanding oligochaetes Paranais frici and Pristina acuminata. Dreissenids were by far the most abundant NIS. Several other NIS were also common, but others were detected in only a few of the > 200 samples taken. Non-indigenous amphipods and Dreissena were most frequently detected in sweep net and colonization plate samples of littoral vegetation, while NIS oligochaetes, gastropods, and non-dreissenid bivalves were most frequently detected in ponar and bottom sled samples of sediments. Our findings confirm that this major shipping port remains a NIS “hotspot” and emphasize that regular surveys covering a range of habitats with multiple sampling gears and thorough taxonomic effort are needed to detect and monitor non-indigenous species.     

Model experiments mimicking the human intestinal transit and metabolism of D-galacturonic acid and amidated pectin

In order to study the human intestinal transit and metabolism of D-galacturonic acid and amidated pectin a number of model experiments were carried out. Both substrates were incubated under aerobic conditions at 37 degrees C using saliva (2 min) and simulated gastric juice (4 h). Under anaerobic conditions the substrates were incubated at 37 degrees C using human ileostomy and colostomy fluids, each obtained from three different donors, for 10 and for 24 h, respectively. D-Galacturonic acid, SCFA (acetic acid, propionic acid, and butyric acid), as well as methanol were analyzed photometrically after carbazole reaction, GC-flame ionization detection (GC-FID), and headspace solid-phase microextraction GC/MS (HS-SPME-GC/MS), respectively. D-Galacturonic acid and amidated pectin were found to be stable during incubations with saliva and simulated gastric juice, whereas both substrates underwent degradation in the course of human ileostomy and colostomy fluid incubations. D-Galacturonic acid was practically completely decomposed within 10 h and SCFA, with acetic acid as the major representative, were formed up to 98% of the incubated substrate in colostomy effluent. The amidated pectin was only degraded in part, revealing stable amounts of 22-35% and 3-17% in ileostomy (after 10 h) and colostomy fluid (after 24 h), respectively. SCFA were generated up to 59% of the applied amidated pectin. In parallel, 19-60% and 52-67% of the available methyl ester groups were cleaved in the course of incubations with ileostomy and colostomy fluids, respectively. The results demonstrate for the first time that D-galacturonic acid and amidated pectin are stable in human saliva and simulated gastric juice. The degradation of both compounds during incubation with ileostomy effluent is highlighted, providing evidence for a considerable metabolic potential of the small intestine.     

Zur Desorption von mit leichtflüchtigen chlorierten Kohlenwasserstoffen (LCKW) beladenen Adsorberpolymeren

To verify the regeneration of novel crosslinked polymeric adsorbents the desorption of VCHC loaded polymeric adsorbents was investigated and compared to activated carbons. Desorption methods used were thermal analysis, steam regeneration, hot inert gas and solvent regeneration. It was proven that the novel crosslinked polymeric adsorbents were effectively desorbed both by thermal desorption methods and by organic solvents. Thereby, the desorption of the polymeric adsorbents proceeds faster and more complete than of the activated carbons.     

Inhibitory Response to CK II Inhibitor Silmitasertib and CDKs Inhibitor Dinaciclib Is Related to Genetic Differences in Pancreatic Ductal Adenocarcinoma Cell Lines

Casein kinase II (CK2) and cyclin-dependent kinases (CDKs) frequently interact within multiple pathways in pancreatic ductal adenocarcinoma (PDAC). Application of CK2- and CDK-inhibitors have been considered as a therapeutic option, but are currently not part of routine chemotherapy regimens. We investigated ten PDAC cell lines exposed to increasing concentrations of silmitasertib and dinaciclib. Cell proliferation, metabolic activity, biomass, and apoptosis/necrosis were evaluated, and bioinformatic clustering was used to classify cell lines into sensitive groups based on their response to inhibitors. Furthermore, whole exome sequencing (WES) and RNA sequencing (RNA-Seq) was conducted to assess recurrent mutations and the expression profile of inhibitor targets and genes frequently mutated in PDAC, respectively. Dinaciclib and silmitasertib demonstrated pronounced and limited cell line specific effects in cell death induction, respectively. WES revealed no genomic variants causing changes in the primary structure of the corresponding inhibitor target proteins. RNA-Seq demonstrated that the expression of all inhibitor target genes was higher in the PDAC cell lines compared to non-neoplastic pancreatic tissue. The observed differences in PDAC cell line sensitivity to silmitasertib or dinaciclib did not depend on target gene expression or the identified gene variants. For the PDAC hotspot genes kirsten rat sarcoma virus (KRAS) and tumor protein p53 (TP53), three and eight variants were identified, respectively. In conclusion, both inhibitors demonstrated in vitro efficacy on the PDAC cell lines. However, aberrations and expression of inhibitor target genes did not appear to affect the efficacy of the corresponding inhibitors. In addition, specific aberrations in TP53 and KRAS affected the efficacy of both inhibitors.     

First experiences with the new W7-X like control system at the WEGA stellarator

The new quality of the superconducting fusion device Wendelstein 7-X (W7-X) is its capability of steady state operation. Additionally the fusion device W7-X is a very complex technical system. The modular and strongly hierarchical control system has been designed to cope with these two requirements unique for fusion devices.To minimize the risks before commissioning the control and data acquisition system at W7-X it will be thoroughly tested in a prototype installation at the WEGA stellarator. WEGA is a classical stellarator which allows steady state plasma pulses at a magnetic field of 0.5 T. Despite its lesser complexity WEGA has the same main components, e.g. magnetic coil systems, ECRH, and diagnostics as W7-X and is therefore considered to be a suitable test-bed for the control system.The installation of the new W7-X like control and data acquisition system has been finished in March this year. Individual components of the control system have already been commissioned during the installation phase. In April final commissioning and testing of the complete system took place. First discharges fully controlled by the prototype control system have been realized.The contribution will focus on first discharges controlled by the new system. Furthermore it presents first experiences that will incorporate into the further development of the control system and the tools for planning, preparation, and realization of plasma discharges.     

Common browsing and retrieval of technical and experimental data for steady state experiments

Steady state experiments like Wendelstein 7-X have to deal with large amounts of data of different kind. Discharge lengths may last from less than a second up to 30 min. During this time diagnostics will measure data in different discharge phases with different rates depending on the physical program. Furthermore the technical configuration of all devices must be logged during the discharge as well as between experiment phases. This is necessary to allow supervision of constantly running devices. All measured data must be stored together in a common database to make it easily accessible and reduce the effort to combine data. Because of these requirements a continuous data acquisition system must be provided where data may exist at any time. Intelligent methods for browsing and retrieval of the acquired data from the common database are desired. This includes calendar-based time interval selection, overview plots for intervals that cover several days and online views of the last stored data. The contribution will explain the challenges and the advantages induced by this kind of data access methods. Existing and planned solutions for Wendelstein 7-X will be depicted. Particularly the “Data Browser” – a graphical tool specially designed to fulfil these tasks at W7-X – will be presented.     

Carbo-Iron - An Fe/AC composite - As alternative to nano-iron for groundwater treatment

Carbo-Iron^®1 is a novel colloidal composite consisting of activated carbon colloids (ACC) with a d₅₀ particle size of 0.8 μm and anchored deposits of zero-valent iron clusters. This study discusses the principal material properties of Carbo-Iron colloids (CIC) relevant for groundwater treatment in comparison to commercially available nano-sized zero-valent iron (nZVI). CIC with 10-25 wt% Fe⁰ have been developed and tested in laboratory studies for their suitability as dehalogenation reagent and are especially designed to overcome some limitations known from the utilization of nZVI: CIC combine the sorption properties of ACC and the chemical reactivity of nZVI. In column tests, flushed-in CIC showed an enhanced mobility in sediment material compared to nZVI, without the need for colloid stabilizers. However, adding 1-3 wt-% of carboxymethyl cellulose (CMC) related to CIC as colloid stabilizer was found to assure long-lived stable suspensions under laboratory conditions which may additionally support the already improved mobility of the CIC and the homogeneity of particle deposition on the sediment matrix. The hydrophobic character of the ACC carrier provides a high affinity of CIC to non-aqueous phase liquids (NAPL). In undisturbed flow, the reactive particles are collected at the water-NAPL interface. The reagent accumulation at the organic phase is necessary for a successful source attack.     

Critical evaluation of the 2D-CSIA scheme for distinguishing fuel oxygenate degradation reaction mechanisms

Although the uniform initial hydroxylation of methyl tert-butyl ether (MTBE) and other oxygenates during aerobic biodegradation has already been proven by molecular tools, variations in carbon and hydrogen enrichment factors (ε(C) and ε(H)) have still been associated with different reaction mechanisms (McKelvie et al. Environ. Sci. Technol. 2009, 43, 2793-2799). Here, we present new laboratory-derived ε(C) and ε(H) data on the initial degradation mechanisms of MTBE, ethyl tert-butyl ether (ETBE), and tert-amyl methyl ether (TAME) by chemical oxidation (permanganate, Fenton reagents), acid hydrolysis, and aerobic bacteria cultures (species of Aquincola, Methylibium, Gordonia, Mycobacterium, Pseudomonas, and Rhodococcus). Plotting of Δδ(2)H/ Δδ(13)C data from chemical oxidation and hydrolysis of ethers resulted in slopes (Λ values) of 22 ± 4 and between 6 and 12, respectively. With A. tertiaricarbonis L108, R. zopfii IFP 2005, and Gordonia sp. IFP 2009, ε(C) was low (<|-1|‰) and ε(H) was insignificant. Fractionation obtained with P. putida GPo1 was similar to acid hydrolysis and M. austroafricanum JOB5 and R. ruber DSM 7511 displayed Λ values previously only ascribed to anaerobic attack. The fractionation patterns rather correlate with the employment of different P450, AlkB, and other monooxygenases, likely catalyzing ether hydroxylation via different transition states. Our data questions the value of 2D-CSIA for a simple distinguishing of oxygenate biotransformation mechanisms, therefore caution and complementary tools are needed for proper interpretation of groundwater plumes at field sites.     

Partitioning of organic chemicals to storage lipids: elucidating the dependence on Fatty Acid composition and temperature

Lipids serve as important compartments in partitioning of neutral organic chemicals into organisms. Storage lipids, made up of triglycerides with various fatty acids, are among the major classes of lipids. Here, we present experimental equilibrium partition data for diverse chemicals in fish oil, linseed oil, and goose fat at 37 °C. These data, in combination with data from the literature for olive oil and milk fat, show that the fatty acid composition of triglycerides has no significant influence on the partition coefficient. This result allows the derivation of a general predictive model for partitioning into storage lipids. We have collected storage lipid/water partition coefficients for 247 compounds to calibrate polyparameter linear free energy relationships (pp-LFERs) for 37 °C, which achieved a model fit with a root mean squared error of 0.20 log units. To extend the applicability of this model toward the aquatic food chain, we also measured fish oil partition data at 7 °C. The resulting enthalpies were used to calibrate an additional pp-LFER for the temperature dependence of storage lipid/water partitioning. This model allows us to estimate partition coefficients at desired temperatures that occur under typical ambient conditions.     

Kinetics of desorption of organic compounds from dissolved organic matter

This study presents a new experimental technique for measuring rates of desorption of organic compounds from dissolved organic matter (DOM) such as humic substances. The method is based on a fast solid-phase extraction of the freely dissolved fraction of a solute when the solution is flushed through a polymer-coated capillary. The extraction interferes with the solute-DOM sorption equilibrium and drives the desorption process. Solutes which remain sorbed to DOM pass through the extraction capillary and can be analyzed afterward. This technique allows a time resolution for the desorption kinetics from subseconds up to minutes. It is applicable to the study of interaction kinetics between a wide variety of hydrophobic solutes and polyelectrolytes. Due to its simplicity it is accessible for many environmental laboratories. The time-resolved in-tube solid-phase microextraction (TR-IT-SPME) was applied to two humic acids and a surfactant as sorbents together with pyrene, phenanthrene and 1,2-dimethylcyclohexane as solutes. The results give evidence for a two-phase desorption kinetics: a fast desorption step with a half-life of less than 1 s and a slow desorption step with a half-life of more than 1 min. For aliphatic solutes, the fast-desorbing fraction largely dominates, whereas for polycyclic aromatic hydrocarbons such as pyrene, the slowly desorbing, stronger-bound fraction is also important.