Determination of the fraction and stoichiometry of femtomolar levels of biomolecular complexes in an excess of monomer using single-molecule, two-color coincidence detection

We have extended the method of single-molecule fluorescence, two-color coincidence detection (TCCD) to detect coincident events due to a low fraction of a complex against a background of chance coincident events, due to monomers. We developed two complementary methods to determine the number of chance coincident events using the experimental data and without the need for additional experiments. We show that the subtraction of the chance coincidence level is essential for accurate quantification of the relative number of complexes and their stoichiometry. By performing experiments on model samples made from fluorophore-labeled duplex DNA and free dye, a linear dependence on the fraction of duplex DNA was found, independent of the level or ratio of free dye, with quantification down to a level of 0.5% and 500 fM duplex DNA. The method was then used to measure the equilibrium dissociation constant and offrate of a 9-mer duplex DNA, demonstrating the application of this method to systems with nanomolar dissociation constants. These improvements to the method of TCCD analysis significantly extend the application of TCCD to weakly bound complexes and large multicomponent biomolecular systems.     

A test of metabolically efficient coding in the retina

We tested the hypothesis that aspects of the neural code of retinal ganglion cells are optimized to transmit visual information at minimal metabolic cost. Under a broad ensemble of light patterns, ganglion cell spike trains consisted of sparse, precise bursts of spikes. These bursts were viewed as independent neural symbols. The noise in each burst was measured via repeated presentation of the visual stimulus, and the energy cost was estimated from the total charge flow during ganglion cell spiking. Given these costs and noise, the theory of efficient codes predicts an optimal distribution of symbol usage. Symbols that are either noisy or costly occur less frequently in this optimal code. We found good qualitative and quantitative agreement with the measured distribution of burst sizes for ganglion cells in the tiger salamander retina.     

DNA sensing by silicon nanowire: charge layer distance dependence

To provide a comprehensive understanding of the field effect in silicon nanowire (SiNW) sensors, we take a systematic approach to fine tune the distance of a charge layer by controlling the hybridization sites of DNA to the SiNW preimmobilized with peptide nucleic acid (PNA) capture probes. Six target DNAs of the same length, but differentiated successively by three bases in the complementary segment, are hybridized to the PNA. Fluorescent images show that the hybridization occurs exclusively on the SiNW surface between the target DNAs and the PNA. However, the field-effect response of the SiNW sensor decreases as the DNA (charge layer) moves away from the SiNW surface. Theoretical analysis shows that the field effect of the SiNW sensor relies primarily on the location of the charge layer. A maximum of 102% change in resistance is estimated based on the shortest distance of the DNA charge layer (4.7 A) to the SiNW surface.     

MEMS tunable SOI waveguide Bragg grating filter with 1.3 THz tuning range for C-band 100 GHz DWDM optical network

A MEMS tunable integrated waveguide Bragg grating-based filter for C-band optical dense wavelength-division multiplexing (DWDM) network is presented and analyzed in this work. Waveguide Bragg grating being a notch filter in the transmission spectrum is used to realize a tunable filter by varying the applied voltages to the fixed–fixed beam loaded with this grating. The strain across the grating is enhanced by choosing MEMS beam configuration such that the metal electrode is the bottom-most layer of the composite fixed–fixed beam. Device dimensions are chosen to achieve a narrow full width half maximum of 0.77 nm, allowing filtering of adjacent channels of 100 GHz DWDM network. A large Bragg wavelength shift of 10.4 nm (1552.52–1562.92 nm) was achieved at 45.8 V actuation providing tuning for 14 DWDM channels with inter-channel cross talk below ? 21 dB, with tuning range of 1.3 THz.

     

Fatigue crack growth resistance of gas tungsten arc,electron beam and friction stir welded joints of AA2219 aluminium alloy

AA2219 aluminium alloy square butt joints without filler metal addition were fabricated using gas tungsten arc welding (GTAW), electron beam welding (EBW) and friction stir welding (FSW) processes. The effect of three welding processes on fatigue crack growth behaviour is reported in this paper. Transverse tensile properties of the welded joints were evaluated. Microstructure analysis was also carried out using optical and electron microscopes. It was found that the FSW joints are exhibiting superior fatigue crack growth resistance compared to EBW and GTAW joints. This was mainly due to the formation of very fine, dynamically recrystallised grains and uniform distribution of fine precipitates in the weld region.     

Mechanical Properties and Microstructural Characteristics of Friction Welded Dissimilar Joints of Aluminium Alloys

Joining of similar and dissimilar combinations of aluminium alloys 2024 and 6061 were performed using friction welding technique. Microstructure, hardness and tensile properties of the joints were characterized. Microstructure of the alloy were found to change significantly across the joint such as fully deformed, partially deformed and undeformed regions due to deformation, frictional heat and alloy characteristics. Extensive fine grain size was observed in the fully deformed region and volume fraction of finer grains was higher in the alloy 2024 as compared to alloy 6061. Hardness was lower in the weld interface region of the similar joints of AA2024 and AA6061. The lower hardness in the dissimilar metal joint was observed in the heat affected zone of alloy 6061. The tensile strengths of the similar joints were 80 and 85% of respective base metal of alloys 2024 and 6061. The strength of the dissimilar metal joint was observed to be similar to the base metal strength of 6061 alloy. Tensile fracture occurred in the region of joints where lower hardness was observed. The maximum elongation were obtained in dissimilar joints of alloys and characterized by scanning electron microscope. It revealed deep dimple patterns unlike what was observed in similar joints.     

Influences of tool pin profile and welding speed on the formation of friction stir processing zone in AA2219 aluminium alloy

AA2219 aluminium alloy has gathered wide acceptance in the fabrication of light weight structures requiring a high strength to weight ratio. Compared to the fusion welding processes that are routinely used for joining structural aluminium alloys, friction stir welding (FSW) process is an emerging solid state joining process in which the material that is being welded does not melt and recast. This process uses a non-consumable tool to generate frictional heat in the abutting surfaces. The welding parameters and tool pin profile play major roles in deciding the weld quality. In this investigation, an attempt has been made to understand the effect of welding speed and tool pin profile on FSP zone formation in AA2219 aluminium alloy. Five different tool pin profiles (straight cylindrical, tapered cylindrical, threaded cylindrical, triangular and square) have been used to fabricate the joints at three different welding speeds. The formation of FSP zone has been analysed macroscopically. Tensile properties of the joints have been evaluated and correlated with the FSP zone formation. From this investigation it is found that the square pin profiled tool produces mechanically sound and metallurgically defect free welds compared to other tool pin profiles.     

Highly basic CaO nanoparticles in mesoporous carbon materials and their excellent catalytic activity

Highly basic CaO nanoparticles immobilized mesoporous carbon materials (CaO-CMK-3) with different pore diameters have been successfully prepared by using wet-impregnation method. The prepared materials were subjected to extensive characterization studies using sophisticated techniques such as XRD, nitrogen adsorption, HRSEM-EDX, HRTEM and temperature programmed desorption of CO2 (TPD of CO2). The physico-chemical characterization results revealed that these materials possess highly dispersed CaO nanoparticles, excellent nanopores with well-ordered structure, high specific surface area, large specific pore volume, pore diameter and very high basicity. We have also demonstrated that the basicity of the CaO-CMK-3 samples can be controlled by simply varying the amount of CaO loading and pore diameter of the carbon support. The basic catalytic performance of the samples was investigated in the base-catalyzed transesterification of ethylacetoacetate by aryl, aliphatic and cyclic primary alcohols. CMK-3 catalyst with higher CaO loading and larger pore diameter was found to be highly active with higher conversion within a very short reaction time. The activity of 30% CaO-CMK3-150 catalyst for transesterification of ethylacetoacetate using different alcohols increases in the following order: octanol > butanol > cyclohexanol > benzyl alcohol > furfuryl alcohol.