Saccharomyces sensu stricto: systematics, genetic diversity and evolution

Saccharomyces sensu stricto is a species complex that includes most of the yeast strains relevant in the fermentation industry as well as in basic science. The taxonomy of these yeasts has always been controversial, particularly at species level. Over the years, the grouping of Saccharomyces sensu stricto yeasts has undergone changes in accordance with the system employed in classifying yeast cultures. Names of species and single isolates have also undergone changes that have caused confusion for yeast scientists and fermentation technologists. Recent findings have demonstrated that Saccharomyces hayanus and S. pastorianus are not homogeneous and do not seem to be natural groups. The present work examines the current trends in systematics studies, evidences the importance and mechanism of genetic variation and explores the most recent evolutionary theories as a way to elucidate the mechanism of speciation and achieve a more natural grouping of Saccharomyces sensu stricto species.     

Process simulation of a hybrid SOFC/mGT and enriched air/steam fluidized bed gasifier power plant

The aim of this work is to experimentally and numerically analyze the performance of a integrated power plant composed by a steam oxygen fluidized bed biomass gasifier fed by woods, a Solid Oxide Fuel Cell (SOFC) and a micro Gas Turbine (mGT). The numerical analysis is carried out by using ChemCAD software. In particular, SOFC and gasifier were modeled using proper developed Fortran subroutines interfaced to the basic software. The adopted SOFC model was already validated by the authors in previous works, while the gasifier model was here developed and validated by means of experimental activities carried out by using a bench scale gasifier. Different compounds (Benzene, Toluene, Naphthalene, Phenols) were chosen to analyze the tar evolution in the gaseous stream during the gasification process. Hot gas cleaning (based on catalytic ceramic filter candles inserted in the freeboard of the gasifier – UNIQUE concept) was adopted to remove tar and particulates from the fuel hot gas stream. Different moisture contents in the range between 10 and 30% (i.e. in a deviation of 10% around the usual wood moisture content of 20%) were numerically simulated as well as the degree of purity of the oxygen utilized in the power plant (between 25% and 95%, the rest being N₂). The power requirement for pure oxygen production leads to a reduction of the electrical efficiency of the whole power plant. For this reason, a sensitivity analysis was conducted to find the optimal operation conditions in order to maximise the syngas (H₂, CO) content in the produced gas, while maintaining a high overall electrical efficiency.     

Effects of gas diffusion layer (GDL) and micro porous layer (MPL) on cathode performance in microbial fuel cells (MFCs)

This study focused on novel cathode structures to increase power generation and organic substrate removal in microbial fuel cells (MFCs). Three types of cathode structures, including two-layer (gas diffusion layer (GDL) and catalyst layer (CL)), three-layer (GDL, micro porous layer (MPL) and CL), and multi-layer (GDL, CL, carbon based layer (CBL) and hydrophobic layers) structures were examined and compared in single-chamber MFCs (SCMFCs). The results showed that the three-layer (3L) cathode structures had lower water loss than other cathodes and had a high power density (501 mW/m²). The MPL in the 3L cathode structure prevented biofilm penetration into the cathode structure, which facilitated the oxygen reduction reaction (ORR) at the cathode. The SCMFCs with the 3L cathodes had a low ohmic resistance (R_ohmic: 26-34 Ω) and a high cathode open circuit potential (OCP: 191 mV). The organic substrate removal efficiency (71-78%) in the SCMFCs with 3L cathodes was higher than the SCMFCs with two-layer and multi-layer cathodes (49-68%). This study demonstrated that inserting the MPL between CL and GDL substantially enhanced the overall electrical conduction, power generation and organic substrate removal in MFCs by reducing water loss and preventing biofilm infiltration into the cathode structure.     

MALDI-TOF mass spectrometry detection of extra-virgin olive oil adulteration with hazelnut oil by analysis of phospholipids using an ionic liquid as matrix and extraction solvent

The adulteration of extra virgin olive oil (EVOO) with hazelnut oil (HO) is frequent and constitutes a serious concern both for oil suppliers and consumers. The high degree of similarity between the two oils as regards triacylglycerol, total sterol and fatty acid profile, complicates the detection of low percentages of HO in EVOO. However, phospholipids (PLs) are usually present in seed oils at a concentration range of 10–20 g/kg, while the amounts of PLs in VOOs are 300–400 times lower. Thus, in this work a sample pretreatment procedure focused towards the selective PLs extraction was developed; the Bligh–Dyer extraction procedure was modified introducing the ionic liquid resulting from the combination of TBA (tributylamine) and CHCA (α-Cyano-4-hydroxycinnamic acid) as extraction solvent. The selective extraction and enrichment of phospholipids from EVOO and HO samples was then achieved. The relevant extracts were analyzed by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS) using the same ionic liquid TBA-CHCA as MALDI matrix, that was found to be very suitable for PLs analysis. In fact, a remarkable increase of the phospholipids signals, with a simultaneous decrease of those relevant to triacylglycerols and diacylglycerols, was observed in the relevant mass spectra. The applicability of the whole method to the individuation of the presence of HO in EVOO was demonstrated by the analysis of EVOO samples progressively adulterated with variable quantities of HO, that was still detectable at a 1% contamination level.     

Molecular and technological characterization of Staphylococcus xylosus isolated from naturally fermented Italian sausages by RAPD, Rep-PCR and Sau-PCR analysis

Coagulase-negative cocci (CNC) are important microorganisms in fermented sausages because they release lipases and proteases that are able to free short-chain fatty acids and peptides and aminoacids, respectively, that are responsible for the aroma of fermented sausage. The purpose of this study was to characterize Staphylococcus xylosus strains isolated from naturally fermented sausages, produced in three different processing plants in the Friuli Venezia Giulia region in the Northeast of Italy. Two hundred and forty-nine strains of S. xylosus were identified by species-specific PCR and subjected to molecular and technological characterization. RAPD-PCR with primer M13, Rep-PCR using primer (GTG)(5) and Sau-PCR with primer SAG(1) were used for the molecular analysis, while the capability of the strains to grow at different temperatures and in the presence of NaCl and their lipolytic and proteolytic activity were tested in order to define the technological characteristics. The results obtained allowed us to differentiate strains coming from different plants, thereby admitting the presence of strains that are plant-specific.     

Enantiodifferentiation of solerol isomers in dried figs and dates

Concentrates of dried fig (Ficus carica L.) and dried date (Phoenix dactylifera L.) fruits were obtained by solvent extraction (pentane: dichloromethane, 2∶1 by vol) and subsequently analysed by HRGC-MS. Using multidimensional gas chromatography (DB-Wax/oktakis2, 6-di-O-methyl-3-O-pentyl-γ-cyclodextrin) simultaneous enantiodifferentiation of 4,5-dihydroxyhexanoic acid-γ-lactone isomers (solerol) was carried out. The presence of this constituent is reported for the first time in figs and dates. Enantiomeric excesses of 80% and 90% were determined for the (4R,5R)-isomer in figs and dates, respectively.     

Study on silicon surface oxidation of post-implant resist cleaning

Minimum substrate loss is required for resist strip of high dose, ultra shallow junction implant for source/drain extensions. Silicon surface oxidation of downstream plasma resist strip results in silicon recess of the source/drain extension regions. This paper reports the study of silicon surface oxidation for different resist strip plasma chemistries and the effect of plasma strip process parameters such as power, pressure and temperature on silicon surface oxidation. A good agreement was found between optical ellipsometry, XPS (X-ray photoelectron spectroscopy) and TEM (transmission electron spectroscopy) for thickness measurement of very thin (<20 Å) oxide grown on silicon surface due to plasma exposure. Selectivity of crust breakthrough and resist removal over silicon oxidation was also discussed in this paper along with dopant loss.     

Efficient inclusion for a class of XML types with interleaving and counting

Inclusion between XML types is important but expensive, and is much more expensive when unordered types are considered. We prove here that inclusion for XML types with interleaving and counting can be decided in polynomial time in the presence of two important restrictions: no element appears twice in the same content model, and Kleene star is only applied to disjunctions of single elements.     

Study of Evaporative Convection in an Open Cavity under Shear Stress Flow

When a layer of volatile liquid is exposed to a shear flow of inert gas, thermal patterns, in the form of interfacial ripples and bulk plumes, are created by the combined action of evaporative, shear-driven and surface-tension-driven instabilities. The topology of the interfacial thermal patterns is mainly influenced by the geometry of the evaporating surface, the thickness of the evaporating layer, the intensity of the shear flow and by the physic-chemical properties of the working fluid. In this paper, by means of numerical simulations, we focused our attention on the dynamics of the interfacial thermal patterns for different working fluids and thicknesses of the volatile liquid layer. This study has been performed in the frame of the ESA sponsored Space Program on heat and mass transfer CIMEX-1. The choice of the fluids—ethyl alcohol and FC72 (n-perfluorohexane)—the reference values for the inert gas flow rate, the thickness of the liquid layer as well as the geometrical features of the computational domain correspond exactly to the ones foreseen for the CIMEX-1 experiment. However, the main conclusions can be considered of more general validity.