The effective hydrodynamic radius of single DNA-grafted colloids as measured by fast Brownian motion analysis

Optical tweezers accomplished with fast position detection enable one to carry out Brownian motion analysis of single DNA-grafted (grafting density: ∼1000 molecules per particle, molecular weight: 4000 bp) colloids in media of varying NaCl concentration. By that the effective hydrodynamic radius of the colloid under study is determined and found to be strongly dependent on the conformation of the grafted DNA chains. Our results compare well both with recent measurements of the pair interaction potential between DNA-grafted colloids (Kegler et al. Phys Rev Lett 2008; 100:118302) and with microfluidic studies (Gutsche et al. Microfluid Nanofluid 2006; 2:381-386). The observed scaling of the brush height with the ion concentration is in full accord with the theoretical predictions by Pincus, Zhulina, Birshtein and Borisov.     

Drag reduction by DNA-grafting for single microspheres in a dilute λ-DNA solution

The fluid resistance of single micrometre-sized blank and DNA-grafted polystyrene microspheres under shear flow is compared in purified water and dilute λ-DNA solutions by means of optical tweezers experiments with a high spatial (±4 nm) and temporal (±0.2 ms) resolution. The measurement results show that the drag experienced by a colloid in a dilute λ-DNA solution (molecular weight of 48,502 bp per molecule, radius of gyration of 0.5 μm) is significantly decreased if the microsphere bears a grafted DNA brush. This newly discovered drag reduction effect is studied for different parameters, comprising the molecular weight of the grafted DNA molecules (250 bp, 1000 bp and 4000 bp), the concentration of the λ-DNA solution (11, 17 and 23 μg ml^?1, all being significantly smaller than the critical entanglement concentration c¹), the microsphere core diameter (2 μm, 3 μm and 6 μm) as well as the flow speed of the medium (10–50 μm s^?1). The maximum extent of the drag reduction is found to amount to (60 ± 20)% compared to the λ-DNA-induced contribution on the drag acting on blank colloids. We propose a theoretical explanation of this effect based on the combination of the dynamic density functional theory of Rauscher and co-workers [Rauscher M. J. Phys.: Condens. Matter 2010;22:364109] and the stagnation length theory of polymer brushes, as it was established by Kim, Lobaskin et al. [Kim et al. Macromolecules 2008;42(10):3650–3655]. In particular, the solution of the Stokes equation (i.e., the Navier–Stokes equation for creeping flow) for the studied system yields a numerical prediction that is found to be in full accord with our experimental results within measurement uncertainty.     

Synthesis and Biological Evaluation of Novel Epothilone B Side Chain Analogues

The design, synthesis, and biological evaluation of a series of epothilone analogues with novel side chains equipped with an amino group are described. Their design facilitates potential conjugation to selective drug delivery systems such as antibodies. Their synthesis proceeded efficiently via Stille coupling of a readily available vinyl iodide and heterocyclic stannanes. Cytotoxicity studies and tubulin binding assays revealed two of these analogues to be more potent than epothilones A–D and the anticancer agent ixabepilone, currently in clinical use.     

Inroads to Predict in Vivo Toxicology-An Introduction to the eTOX Project

There is a widespread awareness that the wealth of preclinical toxicity data that the pharmaceutical industry has generated in recent decades is not exploited as efficiently as it could be. Enhanced data availability for compound comparison ("read-across"), or for data mining to build predictive tools, should lead to a more efficient drug development process and contribute to the reduction of animal use (3Rs principle). In order to achieve these goals, a consortium approach, grouping numbers of relevant partners, is required. The eTOX ("electronic toxicity") consortium represents such a project and is a public-private partnership within the framework of the European Innovative Medicines Initiative (IMI). The project aims at the development of in silico prediction systems for organ and in vivo toxicity. The backbone of the project will be a database consisting of preclinical toxicity data for drug compounds or candidates extracted from previously unpublished, legacy reports from thirteen European and European operation-based pharmaceutical companies. The database will be enhanced by incorporation of publically available, high quality toxicology data. Seven academic institutes and five small-to-medium size enterprises (SMEs) contribute with their expertise in data gathering, database curation, data mining, chemoinformatics and predictive systems development. The outcome of the project will be a predictive system contributing to early potential hazard identification and risk assessment during the drug development process. The concept and strategy of the eTOX project is described here, together with current achievements and future deliverables.     

Neodymium(III) cathodic processes in molten fluorides

The electrochemical behaviour of the Nd(III)/Nd(0) system has been investigated in several molten media and more particularly in LiF-CaF₂. A preliminary study based both on thermodynamic and experimental data showed that it is not possible to observe the Nd(III)/Nd(0) system in LiF-KF and LiF-NaF melts; because the K⁺ and Na⁺ cation reduction waves hide the Nd³⁺ reduction wave. Then, the Nd(III)/Nd(0) system has been investigated at 810 °C using solutions of NdF₃ in fluoride solvents without K⁺ and Na⁺ ions, such as LiF-CaF₂, by cyclic voltammetry, chronopotentiometry and square wave voltammetry. Experimental results show that neodymium trifluoride is reduced in Nd(0) in a one-step process exchanging three electrons (Nd(III) + 3e⁻ → Nd(0)). The electrode process is shown to be diffusion controlled. Nd(III) diffusion coefficient is in the range of 1.1-1.3 × 10⁻⁵ cm² s⁻¹ at 810 °C.     

DDI-microFIA--A readily configurable microarray-fluorescence immunoassay based on DNA-directed immobilization of proteins

We describe a chip-based immunoassay for multiplex antigen detection, based on the self-assembly of semi-synthetic DNA-protein conjugates to generate an easily configurable protein microarray. The general principle of this microarray-fluorescence immunoassay (microFIA) is similar to that of a two-sided (sandwich) immunoassay. However, covalent single-stranded DNA-streptavidin conjugates are employed for the efficient immobilization of biotinylated capture antibodies through hybridization to complementary surface-bound DNA oligomers. In a model system, we use the DNA-directed immobilization (DDI) of antibodies to generate an antibody microarray for the parallel detection of the tumor marker human carcinoembryonic antigen (CEA), recombinant mistletoe lectin rViscumin (rVis), ceruloplasmin (CEP), and complement-1-inactivator (C1A) in human blood serum samples. Detection limits down to 400 pg mL(-1) are reached. In addition, we describe a method for the internal standardization of protein microarray analyses, based on the simultaneous measurement of constant amounts of the blood proteins CEP and C1 A, intrinsically present in human serum, to compensate for interexperimental variations usually occurring in microarray analyses. The standardization leads to a significantly higher data reliability and reproducibility in intra- and interassay measurements. We further demonstrate that the DDI-microFIA can also be carried out in a single step by tagging of the analyte simultaneously with both capture and detection antibody and subsequent immobilization of the immunocomplex formed, on the DNA microarray capture matrix. This protocol significantly reduces handling time and costs of analysis.     

Synthesis of new boron-rich building blocks for boron neutron capture therapy or energy-filtering transmission electron microscopy

The synthesis of a new ortho-carborane derivative, tetracarboranylketone 4, is reported here. Ketone 4 was prepared from a tetraalkynylated ketone by the addition of decaborane. The keto group was then easily modified to yield the glycosides 17alpha and 18beta, which contain glucose or galactose, respectively, and the nucleotide 13b. In addition to ketone 4, which is acyclic, cyclic ketone 8 was also synthesised. X-ray diffraction analysis of compound 4 indicated the presence of two toluene guest molecules per molecule of the host compound. Furthermore, compound 4 displays a rather low cytotoxicity. These novel products can be used as building blocks to create a new class of biomolecules containing high-density carborane clusters. Such molecules may constitute powerful tools for applications like Boron Neutron Capture Therapy or Energy-Filtering Transmission Electron Microscopy.     

Micellization Behavior of Long-Chain Substituted Alkylguanidinium Surfactants

Surface activity and micelle formation of alkylguanidinium chlorides containing 10, 12, 14 and 16 carbon atoms in the hydrophobic tail were studied by combining conductivity and surface tension measurements with isothermal titration calorimetry. The purity of the resulting surfactants, their temperatures of Cr→LC and LC→I transitions, as well as their propensity of forming birefringent phases, were assessed based on the results of ¹H and ¹³C NMR, differential scanning calorimetry (DSC), and polarizing microscopy studies. Whenever possible, the resulting values of Krafft temperature (T_K), critical micelle concentration (CMC), minimum surface tension above the CMC, chloride counter-ion binding to the micelle, and the standard enthalpy of micelle formation per mole of surfactant (Δ_micH°) were compared to those characterizing alkyltrimethylammonium chlorides or bromides with the same tail lengths. The value of T_K ranged between 292 and 314 K and increased strongly with the increase in the chain length of the hydrophobic tail. Micellization was described as both entropy and enthalpy-driven. Based on the direct calorimetry measurements, the general trends in the CMC with the temperature, hydrophobic tail length, and NaCl addition were found to be similar to those of other types of cationic surfactants. The particularly exothermic character of micellization was ascribed to the hydrogen-binding capacity of the guanidinium head-group.     

Different Enzymatic Processing of γ‐Phosphoramidate and γ‐Phosphoester‐Modified ATP Analogues

Monitoring the activity of ATP‐consuming enzymes provides the basis for elucidating their modes of action and regulation. Although a number of ATP analogues have been developed for this, their scope is restricted because of the limited acceptance by respective enzymes. In order to clarify which kind of phosphate‐modified ATP analogues are accepted by the α‐β‐phosphoanhydride‐cleaving ubiquitin‐activating enzyme 1 (UBA1) and the β‐γ‐phosphoanhydride‐cleaving focal adhesion kinase (FAK), we tested phosphoramidate‐ and phosphoester‐modified ATP analogues. UBA1 and FAK were able to convert phosphoramidate‐modified ATP analogues, even with a bulky modification like biotin. In contrast, a phosphoester‐modified analogue was poorly accepted. These results demonstrate that minor variations in the design of ATP analogues for monitoring ATP utilization have a significant impact on enzymatic acceptance.     

In-service performance assessment of electrostatic precipitators serving a rubber vulcanization process

We examined two emission abatement systems of some vulcanization ovens, serving a unit producing small rubber-based parts for automotive application. Each emission control unit treats the gases exhausted by three to five ovens. A heat exchanger cools down the fumes to a temperature suitable for the correct operation of a couple of two-stage electrostatic precipitators in series. We performed quantitative analysis of concentrations and size distributions in these rubber fumes using aerosol technology instrumentation, namely optical particle spectrometers and electrical mobility particle sizers. The size of sampled particles was mainly between 100?nm and 1000?nm. We evaluated the performance of the exhaust fume abatement units, with focus on the electrostatic precipitator. Concerning batch ovens, the quantitative trend of the emissions follows the thermal cycle of the post-curing process. Time interval since the last maintenance operation causes a gradual reduction in the removal efficiency. The measured data demonstrate the reliability and the adequacy of aerosol instrumentation for the characterization of the emissions from rubber vulcanization ovens. The pair of electrostatic precipitators was shown to be effective in removing most of the particles detected in the fumes stream. The measurement protocol developed in this study allows assessing the influence of the maintenance schedule on the performance of the emission control units. New technologies for treating organic vapors can be evaluated in a reliable and effective way.

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