Recurrent protein folding motifs include various types of helical bundles formed by α-helices that supercoil around each other. While specific patterns of amino acid residues (heptad repeats) characterize the highly versatile folding motif of four-α-helical bundles, the significance of the polypeptide chain directionality is not sufficiently understood, although it determines sequence patterns, helical dipoles, and other parameters for the folding and oligomerization processes of bundles. To investigate directionality aspects in sequence-structure relationships, we reversed the amino acid sequences of two well-characterized, highly regular four-α-helical bundle proteins and studied the folding, oligomerization, and structural properties of the retro-proteins, using Circular Dichroism Spectroscopy (CD), Size Exclusion Chromatography combined with Multi-Angle Laser Light Scattering (SEC-MALS), and Small Angle X-ray Scattering (SAXS). The comparison of the parent proteins with their retro-counterparts reveals that while the α-helical character of the parents is affected to varying degrees by sequence reversal, the folding states, oligomerization propensities, structural stabilities, and shapes of the new molecules strongly depend on the characteristics of the heptad repeat patterns. The highest similarities between parent and retro-proteins are associated with the presence of uninterrupted heptad patterns in helical bundles sequences. 相似文献
The x(CuO)/(1−x)Ni(OH)2 [x=0, 0.1 and 0.3] nanocomposites were prepared by the hydrothermal method in the presence of the surfactant polyethylenglycol-10000 (PEG-10000). X-ray diffraction (XRD), infrared (IR) spectroscopy, scanning electron microscopy (SEM) and transmission electron microscopy (TEM) were used to characterize the as-prepared samples. The increase of the CuO content led to the increase of the crystallite size of both, the β-Ni(OH)2 and the CuO. The increase in the crystallite size greatly affects the band gap energy of the as-prepared nanocomposites. The band gap energies of the x(CuO)/(1−x)Ni(OH)2 nanocomposites were estimated by UV–vis spectroscopic method. UV–vis spectroscopic results showed an apparent decrease in the direct band gap energies. The x(CuO)/(1−x)Ni(OH)2 [x=0, 0.1 and 0.3] nanocomposites show low band gap energies compared to the Ni(OH)2 bulk materials. The enhanced optical properties lead to their possible use in photocatalytic and photovoltaic applications. 相似文献
The methyllysine reader protein Spindlin1 has been implicated in the tumorigenesis of several types of cancer and may be an attractive novel therapeutic target. Small‐molecule inhibitors of Spindlin1 should be valuable as chemical probes as well as potential new therapeutics. We applied an iterative virtual screening campaign, encompassing structure‐ and ligand‐based approaches, to identify potential Spindlin1 inhibitors from databases of commercially available compounds. Our in silico studies coupled with in vitro testing were successful in identifying novel Spindlin1 inhibitors. Several 4‐aminoquinazoline and quinazolinethione derivatives were among the active hit compounds, which indicated that these scaffolds represent promising lead structures for the development of Spindlin1 inhibitors. Subsequent lead optimization studies were hence carried out, and numerous derivatives of both lead scaffolds were synthesized. This resulted in the discovery of novel inhibitors of Spindlin1 and helped explore the structure–activity relationships of these inhibitor series. 相似文献
Supercharged diesel engines are a key element in diesel powertrains that have been extensively modelled yet often without explainable mathematical trends. The present paper demonstrates the analytical modelling of in-cylinder gas speed dynamics and engine brake power. These analytical models provide explainable mathematical trends. In addition, they provide gear-shifting-based modeling because the model parameters can be adjusted to reflect different driving conditions without the need for gathering field data. An unprecedented sensitivity analysis was conducted on these developed models for simplifying them. They were validated using experimental data and the relative error of the developed model of the in-cylinder gas speed dynamics was 9.8%. The study demonstrates with 73% coefficient of determination that the average percentage of deviation of the simulated results from the corresponding field data on the engine brake power is 6.9%. The relative error of the developed model of the engine brake power is 7%. These values of relative error are an order of magnitude of deviation that is less than that of widely recognized models in the field of vehicle powertrain modeling such as the CMEM and GT-Power. These analytically developed models serve as widely valid models. Having addressed and corrected flaws in the corresponding models, such as the model of the in-cylinder gas speed dynamics presented in a key reference in this research area, these developed models can help in better analyzing and assessing the performance of diesel engines.