NKX2-5 Variant in Two Siblings with Thyroid Hemiagenesis

Thyroid hemiagenesis (THA) is an inborn absence of one thyroid lobe of largely unknown etiopathogenesis. The aim of the study was to reveal genetic factors responsible for thyroid maldevelopment in two siblings with THA. None of the family members presented with congenital heart defect. The samples were subjected to whole-exome sequencing (WES) (Illumina, TruSeq Exome Enrichment Kit, San Diego, CA 92121, USA). An ultra-rare variant c.839C>T (p.Pro280Leu) in NKX2-5 gene ({"type":"entrez-nucleotide","attrs":{"text":"NM_004387.4","term_id":"1519243386","term_text":"NM_004387.4"}}NM_004387.4) was identified in both affected children and an unaffected father. In the mother, the variant was not present. This variant is reported in population databases with 0.0000655 MAF (GnomAD v3, dbSNP rs761596254). The affected amino acid position is moderately conserved (positive scores in PhyloP: 1.364 and phastCons: 0.398). Functional prediction algorithms showed deleterious impact (dbNSFP v4.1, FATHMM, SIFT) or benign (CADD, PolyPhen-2, Mutation Assessor). According to ACMG criteria, variant is classified as having uncertain clinical significance. For the first time, NKX2-5 gene variants were found in two siblings with THA, providing evidence for its potential contribution to the pathogenesis of this type of thyroid dysgenesis. The presence of the variant in an unaffected parent, carrier of p.Pro280Leu variant, suggests potential contribution of yet unidentified additional factors determining the final penetrance and expression.     

Staphylococcal Enterotoxin Genes in Coagulase-Negative Staphylococci—Stability,Expression, and Genomic Context

In the current study, we screened a collection of coagulase-negative staphylococci (CoNS) isolates for orthologues of staphylococcal enterotoxins (SEs) involved in S. aureus-related staphylococcal food poisoning (SFP). The amplicons corresponding to SEs were detected in S. chromogenes, S. epidermidis, S. haemolyticus, S. borealis, S. pasteuri, S. saprophyticus, S. vitulinus, S. warneri, and S. xylosus. All amplicons were sequenced and identified as parts of known S. aureus or S. epidermidis SE genes. Quantitative real-time PCR allowed determining the relative copy number of each SE amplicon. A significant portion of the amplicons of the sea, seb, sec, and seh genes occurred at low copy numbers. Only the amplicons of the sec gene identified in three isolates of S. epidermidis displayed relative copy numbers comparable to sec in the reference enterotoxigenic S. aureus and S. epidermidis strains. Consecutive passages in microbiological media of selected CoNS isolates carrying low copy numbers of sea, seb, sec, and seh genes resulted in a decrease of gene copy number. S. epidermidis isolates harbored a high copy number of sec, which remained stable over the passages. We demonstrated that enterotoxin genes may occur at highly variable copy numbers in CoNS. However, we could identify enterotoxin genes only in whole-genome sequences of CoNS carrying them in a stable form at high copy numbers. Only those enterotoxins were expressed at the protein level. Our results indicate that PCR-based detection of enterotoxin genes in CoNS should always require an additional control, like analysis of their presence in the bacterial genome. We also demonstrate S. epidermidis as a CoNS species harboring SE genes in a stable form at a specific chromosome site and expressing them as a protein.     

Impact of the addition of dolomite to cream-firing clays on the technological and color properties of sintered ceramics

Sintered ceramics, represented by ceramic tiles or clinker bricks, are widely used in the building materials industry due to their technological properties and visual qualities. The topic of color changing of ceramic materials from cream-firing clays with the use of mineral additives has not been addressed to date. The aim of the paper was to investigate the effect of granulation of dolomite additives to ceramic masses based on cream-firing Borkowice clay on the color and properties of fired ceramic materials. The paper proposes that grain size of mineral additive affects the color of sintered ceramics. In order to confirm this hypothesis, a number of experiments were performed, consisting of determination of the color and technological properties of ceramic materials. The conducted tests showed that the color and technological properties of sintered ceramics are influenced by the grain size of the additives used.     

The investigation of the lower limb geometry using 3D sonography and magnetic resonance

The main aim of this work was to test the developed system of a free hand sonographic probe in the clinical conditions. The measuring system consists of navigation system tracking the position of a linear ultrasound probe and the self-developed software to control the tools and analyse the recorded data. It enables both measurement of geometrical parameters according to the self-designed template and the identification of the three dimensional shape of bone. Moreover the software provides virtual planning of surgery and supports the surgeon to execute the planned scenario in the reality.     

Broadening project participation through a modified building sustainability assessment

Building assessment tools are used as a means to assess and encourage the adoption of sustainability-led thinking and practice in the delivery of buildings. However, the established tools focus primarily on the aspects of green or sustainable building (i.e. building as an end-product), rarely exploring the contributions towards sustainable product delivery (i.e. the building process). However, some principles of sustainable development are best implemented within the process rather than by being embedded in the product. By addressing the issues of equity via participation through stakeholder-oriented sustainability assessment, building assessment tools could be used to enhance significantly the overall sustainability of project delivery in the construction sector. A theoretical justification is advocated for implementing a participatory approach that is underpinning the development of a specification for a building sustainability assessment model currently under development. The barriers to participation in the construction process are considered as well as the need to develop innovative mechanisms to broaden membership of the construction project team. The philosophical approaches and resultant practices drawn from Environmental Assessment and the Process Protocol are presented as examples of potential solutions for incorporating stakeholder participation in a modified building assessment process.     

Raman Research on Bleomycin-Induced DNA Strand Breaks and Repair Processes in Living Cells

Even several thousands of DNA lesions are induced in one cell within one day. DNA damage may lead to mutations, formation of chromosomal aberrations, or cellular death. A particularly cytotoxic type of DNA damage is single- and double-strand breaks (SSBs and DSBs, respectively). In this work, we followed DNA conformational transitions induced by the disruption of DNA backbone. Conformational changes of chromatin in living cells were induced by a bleomycin (BLM), an anticancer drug, which generates SSBs and DSBs. Raman micro-spectroscopy enabled to observe chemical changes at the level of single cell and to collect hyperspectral images of molecular structure and composition with sub-micrometer resolution. We applied multivariate data analysis methods to extract key information from registered data, particularly to probe DNA conformational changes. Applied methodology enabled to track conformational transition from B-DNA to A-DNA upon cellular response to BLM treatment. Additionally, increased expression of proteins within the cell nucleus resulting from the activation of repair processes was demonstrated. The ongoing DNA repair process under the BLM action was also confirmed with confocal laser scanning fluorescent microscopy.     

Investigation of the Associations of Novel Inflammatory Biomarkers—Systemic Inflammatory Index (SII) and Systemic Inflammatory Response Index (SIRI)—With the Severity of Coronary Artery Disease and Acute Coronary Syndrome Occurrence

Atherosclerosis, the underlying cause of coronary artery disease (CAD), has a significant inflammatory component. White blood cell count is an affordable and accessible way to assess the systemic immune response, as it comprises many subgroups with distinct and complex functions. Considering their multidirectional effect on atherosclerosis, new biomarkers integrating various leukocyte subgroups, the Systemic Inflammatory Index (SII) and the Systemic Inflammatory Response Index (SIRI), were recently devised to describe the balance between inflammation and immune reaction. This research aimed to evaluate the relationship of the intensity of inflammation measured by these biomarkers with the severity of CAD assessed with coronary angiography and with the diagnosis of acute coronary syndrome (ACS) or stable CAD in 699 patients. SIRI, but not SII, was associated with the diagnosis, having the highest values for patients with ACS (STEMI), significantly higher than in patients with stable CAD (p < 0.01). The highest SII and SIRI values were observed in patients with three-vessel CAD. SII and SIRI require further in-depth and well-designed research to evaluate their potential in a clinical setting.