Deformable M-Reps for 3D Medical Image Segmentation

M-reps (formerly called DSLs) are a multiscale medial means for modeling and rendering 3D solid geometry. They are particularly well suited to model anatomic objects and in particular to capture prior geometric information effectively in deformable models segmentation approaches. The representation is based on figural models, which define objects at coarse scale by a hierarchy of figures—each figure generally a slab representing a solid region and its boundary simultaneously. This paper focuses on the use of single figure models to segment objects of relatively simple structure.A single figure is a sheet of medial atoms, which is interpolated from the model formed by a net, i.e., a mesh or chain, of medial atoms (hence the name m-reps), each atom modeling a solid region via not only a position and a width but also a local figural frame giving figural directions and an object angle between opposing, corresponding positions on the boundary implied by the m-rep. The special capability of an m-rep is to provide spatial and orientational correspondence between an object in two different states of deformation. This ability is central to effective measurement of both geometric typicality and geometry to image match, the two terms of the objective function optimized in segmentation by deformable models. The other ability of m-reps central to effective segmentation is their ability to support segmentation at multiple levels of scale, with successively finer precision. Objects modeled by single figures are segmented first by a similarity transform augmented by object elongation, then by adjustment of each medial atom, and finally by displacing a dense sampling of the m-rep implied boundary. While these models and approaches also exist in 2D, we focus on 3D objects.The segmentation of the kidney from CT and the hippocampus from MRI serve as the major examples in this paper. The accuracy of segmentation as compared to manual, slice-by-slice segmentation is reported.     

Describing Near Surface, Transient Flow Processes in Unconfined Aquifers below Irrigated Lands: Model Application in the Western San Joaquin Valley, California

In order to rigorously examine near surface, field to field interactions between irrigation management regimes and a shallow fluctuating water table, an enhanced deforming finite element (DFE) model was recently developed. The enhanced DFE model, through a process of iteration within each time step, avoids making common assumptions regarding the changing geometry of an aquifer free surface. This paper demonstrates the usefulness and effectiveness of the model by employing it to an irrigated region in the western San Joaquin Valley, Calif., where shallow subsurface tile drains have been installed to control shallow water tables. By virtue of the problems created by the need to dispose off the drainage water, this region has been the focus of several important regional scale modeling exercises, which have evaluated the utility of management strategies, such as source control, groundwater pumping, and land retirement. By refining the focus of the analysis, the enhanced DFE model is found to be able to show that both sources control and managed pumping could be more effective drainage control strategies than predicted based on the results of regional models.     

A novel polarizer‐free dye‐doped polymer‐dispersed liquid crystal for reflective TFT displays

Abstract— A novel preparation method for dichroic dye‐doped polymer‐dispersed liquid crystals has been developed. This was achieved by creating a porous polymer matrix first by washing out the liquid crystal from a polymer‐dispersed liquid crystal (PDLC), which is then refilled with dye‐doped liquid crystal. Optimizing the liquid crystal used in the refilling results in decreased turn‐on voltage and faster response time. Poster‐standard reflectivity and newspaper‐standard contrast was demonstrated with a 3.8‐in. QVGA reflective TFT display with a drive voltage of 10 V.     

Labelled-replica techniques: post-shadow labelling of intramembrane particles in freeze-fracture replicas

Three methods are described for direct post-fracture, post-shadow labelling of individual classes of intramembrane particles (IMPs) in freeze-fracture replicas of biological membranes. The P-face IMPs corresponding to the acetylcholine receptor complexes (AChRs) of vertebrate neuroeffector junctions are identified by post-replication labelling with ferritin-antibody complexes and with neurotoxin-biotin-avidin-colloidal gold affinity ligands. (The freeze-etch nomenclature of Branton et al., 1975, is used in this report.) These post-shadow labelling techniques resemble conventional en bloc labelling techniques except that the labelling reagents must penetrate a thin but discontinuous layer of platinum superimposed on the molecules of interest. In the ‘sectioned labelled-replica technique’, the replicated and labelled tissues are stained, embedded in plastic and sectioned parallel to the replica-tissue interfaces. In the direct ‘labelled-replica techniques’, the replicated and labelled samples are freeze-dried or critical point dried, the labelled surfaces are stabilized by carbon coating, and the underlying tissues are dissolved, allowing the labelled-replicas to be examined as conventional freeze-fracture replicas. The unshadowed side of each AChR IMP is shown to retain sufficient biochemical information to permit both immunospecific and neurotoxin specific labelling despite formaldehyde fixation, freezing, fracturing, platinum shadowing, and thawing in aqueous media. A new mixed ferricyanide-osmium staining method reveals electron opaque structures spanning the membrane bilayer in the same size, number and distribution as the labelled IMPs. These experiments demonstrate the feasibility of identifying individual IMPs in freeze-fracture replicas and may allow the identification of specific membrane lesions in human disease.     

Force detected electron spin resonance at 94 GHz

Force detected electron spin resonance (FDESR) detects the presence of unpaired electrons in a sample by measuring the change in force on a mechanical resonator as the magnetization of the sample is modulated under magnetic resonance conditions. The magnetization is coupled to the resonator via a magnetic field gradient. It has been used to both detect and image distributions of electron spins, and it offers both extremely high absolute sensitivity and high spatial imaging resolution. However, compared to conventional induction mode ESR the technique also has a comparatively poor concentration sensitivity and it introduces complications in interpreting and combining both spectroscopy and imaging. One method to improve both sensitivity and spectral resolution is to operate in high magnetic fields in order to increase the sample magnetization and g-factor resolution. In this article we present FDESR measurements on the organic conductor (fluoranthene)(2)PF(6) at 3.2 T, with a corresponding millimeter-wave frequency of 93.5 GHz, which we believe are the highest field results for FDESR reported in the literature to date. A magnet-on-cantilever approach was used, with a high-anisotropy microwave ferrite as the gradient source and employing cyclic saturation to modulate the magnetization at the cantilever fundamental frequency.     

Foreword: Values in psychotherapy.

Contends that the glory of psychotherapists' "tree of psychology" is that its roots are absolutely philosophical and, therefore, limitless in scope and devoid of absolute proofs. The trunk of this tree is a solid and substantial store of scientific and empirical data. The branches bear a multitude of flowers, many of which are not quite substantial; not made to endure the critical climate of a questioning world. Ultimately, however, these flowers contain the germinating factor, that which allows human knowledge the possibility of continued growth and rejuvenation. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

The territory ahead for multicultural competence: The "spinning" of racism.

Multicultural competence has become a mainstay within the training of professional psychologists, yet important areas within this framework remain to be more fully addressed. In particular, the dynamics of contemporary forms of racism have largely gone unexplored, depriving psychologists of clear direction in exploring the deepest levels of racist influences in their work. This qualitative analysis sought to shed light into this area by studying White people's experiences of race and racism. Although most affirmed the existence of racism, it was "spun" by most White participants--in other words, interpreted to their own advantage-into a problem that lies outside the scope of their own lives and responsibilities. Implications and resources for the practice and training of professional psychologists are presented. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Rapid Proteomic Characterization of Bacteriocin-Producing Enterococcus faecium Strains from Foodstuffs

Enterococcus belongs to a group of microorganisms known as lactic acid bacteria (LAB), which constitute a broad heterogeneous group of generally food-grade microorganisms historically used in food preservation. Enterococci live as commensals of the gastrointestinal tract of warm-blooded animals, although they also are present in food of animal origin (milk, cheese, fermented sausages), vegetables, and plant materials because of their ability to survive heat treatments and adverse environmental conditions. The biotechnological traits of enterococci can be applied in the food industry; however, the emergence of enterococci as a cause of nosocomial infections makes their food status uncertain. Recent advances in high-throughput sequencing allow the subtyping of bacterial pathogens, but it cannot reflect the temporal dynamics and functional activities of microbiomes or bacterial isolates. Moreover, genetic analysis is based on sequence homologies, inferring functions from databases. Here, we used an end-to-end proteomic workflow to rapidly characterize two bacteriocin-producing Enterococcus faecium (Efm) strains. The proteome analysis was performed with liquid chromatography coupled to a trapped ion mobility spectrometry-time-of-flight mass spectrometry instrument (TimsTOF) for high-throughput and high-resolution characterization of bacterial proteins. Thus, we identified almost half of the proteins predicted in the bacterial genomes (>1100 unique proteins per isolate), including quantifying proteins conferring resistance to antibiotics, heavy metals, virulence factors, and bacteriocins. The obtained proteomes were annotated according to function, resulting in 22 complete KEGG metabolic pathway modules for both strains. The workflow used here successfully characterized these bacterial isolates and showed great promise for determining and optimizing the bioengineering and biotechnology properties of other LAB strains in the food industry.