Semantic Web: A road to the knowledge infrastructure on the internet

In this article, I describe the basic technologies for Semantic Web and relationship between Semantic Web and Knowledge Representation in Artificial Intelligence. Semantic Web is planned as an extension of the current web in order to help cooperation between computers and humans, i.e., computers and humans are expected to understand each other in the knowledge level. I first describe the vision of the Semantic Web, then introduce the current Semantic Web technologies, i.e., RDF, RDFS, and OWL. I describe relationship between the trend of Semantic Web and Knowledge Representation, and clarify challenges and difficulties of Semantic Web from the point of view of Knowledge Representation. Hideaki Takeda: He is a professor at National Institute of Informatics (NII) and a professor in Department of Informatics at the Graduate University of Advanced Studies (Sokendai). He received his Ph.D. from the University of Tokyo in 1991. His research interest in computer science includes ontology engineering, community informatics and knowledge sharing systems.     

Partial redundancy elimination for access expressions by speculative code motion

We present a new memory access optimization for Java to perform aggressive code motion for speculatively optimizing memory accesses by applying partial redundancy elimination (PRE) techniques. First, to reduce as many barriers as possible and to enhance code motion, we perform alias analysis to identify all the regions in which each object reference is not aliased. Secondly, we find all the possible barriers. Finally, we perform code motions in three steps. For the first step, we apply a non‐speculative PRE algorithm to move load instructions and their following instructions in the backwards direction of the control flow graph. For the second step, we apply a speculative PRE algorithm to move some of them aggressively before the conditional branches. For the third step, we apply our modified version of a non‐speculative PRE algorithm to move store instructions in the forward direction of the control flow graph and to even move some of them after the merge points. We implemented our new algorithm in our production‐level Java just‐in‐time compiler. Our experimental results show that our speculative algorithm improves the average (maximum) performance by 13.1% (90.7%) for jBYTEmark and 1.4% (4.4%) for SPECjvm98 over the fastest algorithm previously described, while it increases the average (maximum) compilation time by 0.9% (2.9%) for both benchmark suites. Copyright © 2004 John Wiley & Sons, Ltd.     

State-of-the-Art Molecular Dynamics Simulation Studies of RNA-Dependent RNA Polymerase of SARS-CoV-2

Molecular dynamics (MD) simulations are powerful theoretical methods that can reveal biomolecular properties, such as structure, fluctuations, and ligand binding, at the level of atomic detail. In this review article, recent MD simulation studies on these biomolecular properties of the RNA-dependent RNA polymerase (RdRp), which is a multidomain protein, of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are presented. Although the tertiary structures of RdRps in SARS-CoV-2 and SARS-CoV are almost identical, the RNA synthesis activity of RdRp of SARS-CoV is higher than SARS-CoV-2. Recent MD simulations observed a difference in the dynamic properties of the two RdRps, which may cause activity differences. RdRp is also a drug target for Coronavirus disease 2019 (COVID-19). Nucleotide analogs, such as remdesivir and favipiravir, are considered to be taken up by RdRp and inhibit RNA replication. Recent MD simulations revealed the recognition mechanism of RdRp for these drug molecules and adenosine triphosphate (ATP). The ligand-recognition ability of RdRp decreases in the order of remdesivir, favipiravir, and ATP. As a typical recognition process, it was found that several lysine residues of RdRp transfer these ligand molecules to the binding site such as a “bucket brigade.” This finding will contribute to understanding the mechanism of the efficient ligand recognition by RdRp. In addition, various simulation studies on the complexes of SARS-CoV-2 RdRp with several nucleotide analogs are reviewed, and the molecular mechanisms by which these compounds inhibit the function of RdRp are discussed. The simulation studies presented in this review will provide useful insights into how nucleotide analogs are recognized by RdRp and inhibit the RNA replication.     

基于实际运行数据的不同气候区冬季空气源热泵结霜特征分析

空气源热泵运行中存在的突出问题是室外机结霜而导致的机组性能下降。在实际应用中,当地气候条件下空气源热泵结霜的难易程度决定了大多数除霜技术的适用性。空气源热泵结霜的难易程度除了受气候影响外,还受系统运行性能甚至用户使用习惯的影响,难以做出定量的判断。因此本文提出结霜度时数的概念,以专门表征气候条件对结霜的影响。通过在国内多地采集空气源热泵实际运行数据,使得结霜度时数的计算更接近实际情况,再对运行数据进行拟合分析得到了不同功率类型的热泵系统的蒸发温度与室外干球温度之间的特征温差,此温差可以用来修正传统设计上所假设的某个定值。最后,根据不同特征温差下的结霜度时数分析,结合不同功率类型的热泵系统在国内275个城市的结霜特征,对这些城市进行了结霜气候分区,为空气源热泵系统进行气候适应性的设计以及控制策略开发提供参考。     

Self-assembly of three dimensional micro mechanisms using thermal shrinkage of polyimide

This paper describes three-dimensional microstructures fabricated using a simple self-assembly process involving the thermal shrinkage of polyimide. The proposed method enables hinged structures to be automatically rotated out of the wafer plane and to remain bent without the need to use any interlocking mechanisms. The hinged structures were fabricated using surface micromachining techniques involving heating in a furnace. An increase in the bending angle due to the shrinkage of polyimide was observed with increasing heating temperature, heating time, and length of the polyimide hinge. Of these three parameters, the heating time was found to be the most suitable for precise control of the bending angle. Furthermore, microcubes were fabricated by this method and the self-assembly process was successfully visualized using a CCD camera.     

Mutagenicity and DNA-damaging activity of decomposed products of food colours under UV irradiation

Five synthetic food colours Food Red Nos 3, 40 and 102 and Food Blue Nos 1 and 2, and their UV irradiated products were tested for mutagenic activity by means of the Ames test using Salmonella typhimurium strains TA98 and TA100. Food colours were irradiated with UV light for 14 days. Food Red Nos 3, 40 and 102 and Food Blue No. 1 were non-mutagenic before and after irradiation. UV irradiated products of Food Blue No. 2 were mutagenic in TA98 with or without S-9 mix. The mutagenic activity increased with increasing irradiation period, reached maximum potency on day 6, and then decreased. Moreover, Food Blue No. 2 showed DNA-damaging activity after 14 days of irradiation in rec-assay using Bacillus subtilis strains H17 and M45. The capillary electrophoresis was applied for the analysis of UV irradiated products of Food Blue No. 2. The original peak of Food Blue No. 2 was decomposed into seven peaks after UV irradiation.     

Cooperative behavior of various agents in dynamic environment

The multi-agent model is a model in which agents with limited ability cooperate each other to accomplish a goal. In this paper, we introduce a multi-agent model in which agents are created to imitate real ants. There are two different type of agents, each type of which has a particular task. We designed agents to communicate each other by using pheromone considering noise. On this model, we observed cooperative behavior of agents and evaluated conditions to make an order of behavior in the model.     

Ubiquitous Memories: a memory externalization system using physical objects

In this paper we propose an object-triggered human memory augmentation system named “Ubiquitous Memories” that enables a user to directly associate his/her experience data with physical objects by using a “touching” operation. A user conceptually encloses his/her experiences gathered through sense organs into physical objects by simply touching an object. The user can also disclose and re-experience for himself/herself the experiences accumulated in an object by the same operation. We implemented a prototype system composed basically of a radio frequency identification (RFID) device. Physical objects are also attached to RFID tags. We conducted two experiments. The first experiment confirms a succession of the “encoding specificity principle,” which is well known in the research field of psychology, to the Ubiquitous Memories system. The second experiment aims at a clarification of the system’s characteristics by comparing the system with other memory externalization strategies. The results show the Ubiquitous Memories system is effective for supporting memorization and recollection of contextual events.     

Thermodynamic evaluation of Cu– system based on newly determined Gibbs energy of formation of

Thermodynamic evaluation of Cu–Cu₃P system has been conducted by applying subregular solution model with Gibbs energy of Cu₃P formation that was newly determined by means of triple Knudsen cell mass spectrometry. Both the calculated vapor pressure of phosphorus and phase diagram of Cu–P system are excellently consistent with the literature data in the composition range of Cu–Cu₃P, indicating that there is no significant thermodynamic inconsistency between the present work based on the Gibbs energy of Cu₃P formation determined and the literature data.