The Impact of Sub-Millisecond Damage Fixation Kinetics on the In Vitro Sparing Effect at Ultra-High Dose Rate in UNIVERSE

The impact of the exact temporal pulse structure on the potential cell and tissue sparing of ultra-high dose-rate irradiation applied in FLASH studies has gained increasing attention. A previous version of our biophysical mechanistic model (UNIVERSE: UNIfied and VERSatile bio response Engine), based on the oxygen depletion hypothesis, has been extended in this work by considering oxygen-dependent damage fixation dynamics on the sub-milliseconds scale and introducing an explicit implementation of the temporal pulse structure. The model successfully reproduces in vitro experimental data on the fast kinetics of the oxygen effect in irradiated mammalian cells. The implemented changes result in a reduction in the assumed amount of oxygen depletion. Furthermore, its increase towards conventional dose-rates is parameterized based on experimental data from the literature. A recalculation of previous benchmarks shows that the model retains its predictive power, while the assumed amount of depleted oxygen approaches measured values. The updated UNIVERSE could be used to investigate the impact of different combinations of pulse structure parameters (e.g., dose per pulse, pulse frequency, number of pulses, etc.), thereby aiding the optimization of potential clinical application and the development of suitable accelerators.     

Mechanochemically induced amorphous/crystalline phase transition in the Bi4Ti3O12 compound

Concurrent milling of Bi₄Ti₃O₁₂ was carried out in a planetary ball mill with hardened-steel 13 or 6 mm diameter balls with a goal to investigate how the system responds to the constrains imposed by milling. Milling intensity for various milling parameters was derived from the electrical power measurement. The reverse amorphous ↔ crystalline phase transition induced by milling is governed by impact energy and frequency. Below a certain threshold value of impact energy crystallization does not occur, whereas a higher impact frequency accelerates amorphization. Mechanochemical reactions are predominantly discrete processes, which occur at the moment of impact.     

Lipid oxidative changes in chitosan-oregano coated traditional dry fermented sausage Petrovská klobása

The effect of a chitosan coating with added essential oil of oregano (Origanum vulgare) on lipid oxidation of dry fermented sausage (Petrovská klobása) was investigated. Fatty acid profile, aldehyde contents and sensory analysis of odor and flavor were determined after drying and during seven months of storage.     

Multimorphing: A tool for shape synthesis and analysis

Morphing is a shape transformation where the shape of one object is deformed to the shape of the other object. It is used as an animation or a modeling technique. Classical morphing operates between two input objects but this concept can be extended to multiple input objects – the so called multimorphing. Shapes generated by the multimorphing form a space of shapes motivated by an affine space. Besides the analogy with an affine space we also introduce an inner product and a concept of an orthogonal projection. We also show how to explore space of shapes and how to systematically generate new shapes. The paper focuses on the boundary representation, although some ideas are more general and can be used for other representations, too.     

Food,Family, and Memory: Belgrade Mothers and Their Migrant Children

This article explores the link between food, memory, and cultural transmission in the context of migrant adult children and their mothers left behind. Since the fall of Yugoslavia in 1991 these women have experienced severe social, financial, and emotional disruption caused by the consequences of war, hyperinflation, post-communist turmoil, and the loss of children to migration. All this had a profoundly disorienting effect on these elderly women, leaving them to their own means to re-establish the sense of “wholeness” in their lives. Sending food to migrant children served to instill a memory of who these women are to their children and to remind migrants of their family. It also served mothers themselves to reiterate their role as “mothers” within a wider social network and society. Cultural transmission in the sphere of domesticity is one of few available ways for these elderly women to attain at least some sort of power in a male-dominated patriarchal Serbian society. Food, it will be argued here, does not only help migrants restore sense of “wholeness” (Sutton 2001:75), but it serves as a powerful tool in the process of social reproduction.     

Efficient PCR-based gene disruption in Saccharomyces strains using intergenic primers

Gene disruptions are a vital tool for understanding Saccharomyces cerevisiae gene function. An arrayed library of gene disruption strains has been produced by a consortium of yeast laboratories; however their use is limited to a single genetic background. Since the yeast research community works with several different strain backgrounds, disruption libraries in other common laboratory strains are desirable. We have developed simple PCR-based methods that allow transfer of gene disruptions from the S288C-derived strain library into any Saccharomyces strain. One method transfers the unique sequence tags that flank each of the disrupted genes and replaces the kanamycin resistance marker with a recyclable URA3 gene from Kluyveromyces lactis. All gene-specific PCR amplifications for this method are performed using a pre-existing set of primers that are commercially available. We have also extended this PCR technique to develop a second general gene disruption method suitable for any transformable strain of Saccharomyces.     

The absence of the Isw2p-Itc1p chromatin-remodelling complex induces mating type-specific and Flo11p-independent invasive growth of Saccharomyces cerevisiae

The Isw2p-Itc1p chromatin remodelling complex of Saccharomyces cerevisiae is a member of the ISWI class of ATPases with a nucleosome spacing activity, involved in regulation of expression of a broad spectrum of genes. Its absence causes derepression of a-specific genes and aberrant morphology in alpha-mating type cells. We report here that the deletion of the ISW2 gene in the originally non-invasive BY strain induces mating type-specific invasive growth strongly affected by nitrogen starvation. Although the Flo11 protein was postulated to be critical for haploid invasive growth, we showed that the invasive growth caused by the isw2 and itc1 deletions in alpha-mating type cells was Flo11p-independent. This type of invasive growth was proved to be a consequence of the activation of the pheromone response pathway. Our results suggest that Isw2 and Itc1 proteins do not have the same impact on the described phenomenon.     

Oxidative properties and chemical stability of fluoronanotubes in matrixes of binary inorganic compounds

The chemical stability of fluoronanotubes in selected solid inorganic matrixes has been studied by initially mixing and mechanically grinding the components and subsequently heating them at temperatures ranging from 35 to 600 degrees C. The inorganic compounds selected for matrixes included halides (KBr, KI, Lil, LiBr, LiCl, NaCl, Znl2), oxides (Li2O, Fe2O3, PbO, MnO), lithium peroxide (Li2O2), potassium superoxide (KO2), sulfides (Li2S and ZnS), zinc selenide (ZnSe), lithium nitride (Li3N), and aluminum phosphide (AIP). Solid products, resulting from the proceeding chemical reactions, were analyzed by X-ray diffraction, Raman spectroscopy, and SEM/EDX elemental analysis. Gaseous and volatile products were identified with the help of the TGA/MS technique. Experimental data presented in this paper provide clear evidence that fluoronanotubes are not chemically inert toward the solid matrixes studied and exhibit significant oxidative properties in the redox reactions occurring under various temperatures, depending on the nature of the inorganic compound.     

Exploring the bibliometric and semantic nature of negative results

Negative results are not popular to disseminate. However, their publication would help to save resources and foster scientific communication. This study analysed the bibliometric and semantic nature of negative results publications. The Journal of Negative Results in Biomedicine (JNRBM) was used as a role model. Its complete articles from 2002–2009 were extracted from SCOPUS and supplemented by related records. Complementary negative results records were retrieved from Web of Science in “Biochemistry” and “Telecommunications”. Applied bibliometrics comprised of co-author and co-affiliation analysis and a citation impact profile. Bibliometrics showed that authorship is widely spread. A specific community for the publication of negative results in devoted literature is non-existent. Neither co-author nor co-affiliation analysis indicated strong interconnectivities. JNRBM articles are cited by a broad spectrum of journals rather than by specific titles. Devoted negative results journals like JNRBM have a rather low impact measured by the number of received citations. On the other hand, only one-third of the publications remain uncited, corroborating their importance for the scientific community. The semantic analysis relies on negative expressions manually identified in JNRBM article titles and abstracts and extracted to syntactic patterns. By using a Natural Language Processing tool these patterns are then employed to detect their occurrences in the multidisciplinary bibliographical database PASCAL. The translation of manually identified negation patterns to syntactic patterns and their application to multidisciplinary bibliographic databases (PASCAL, Web of Science) proved to be a successful method to retrieve even hidden negative results. There is proof that negative results are not only restricted to the biomedical domain. Interestingly a high percentage of the so far identified negative results papers were funded and therefore needed to be published. Thus policies that explicitly encourage or even mandate the publication of negative results could probably bring about a shift in the current scientific communication behaviour.