Real-time monitoring of DNA hybridization and melting processes using a fiber optic sensor

In this paper a fiber optic surface plasmon resonance (FO-SPR) sensor was used to analyze the melting process of DNA linked to silica nanoparticles. Real-time monitoring of a DNA melting process has rarely been studied using surface plasmon resonance (SPR), since most commercial SPR setups do not allow for dynamic and accurate temperature control above 50 °C. The FO-SPR sensor platform, with silica nanobead signal amplification, allows sensing inside a standard PCR thermocycler, which makes high resolution DNA melting curve analysis possible. This innovative combination was used to characterize the hybridization and melting events between DNA immobilized on the sensor surface and DNA probes on silica nanoparticles. At optimized hybridization conditions complementary DNA strands of different lengths could be distinguished. While the real-time FO-SPR analysis of DNA hybridization did not result in significant variances, the analysis of DNA melting determined the exact length of overlap and the matching Gibbs energy.     

Three compartment bioimpedance spectroscopy in the nutritional assessment and the outcome of patients with advanced or end stage kidney disease: What have we learned so far?

Bioimpedance spectroscopy (BIS) is an easily applicable tool to assess body composition. The three compartment model BIS (3C BIS) conventionally expresses body composition as lean tissue index (LTI) (lean tissue mass [LTM]/height in meters squared) and fat tissue index (FTI) (adipose tissue mass/height in meters squared), and a virtual compartment reflecting fluid overload (FO). It has been studied extensively in relation to diagnosis and treatment guidance of fluid status disorders in patients with advanced‐stage or end‐stage renal disease. It is the aim of this article to provide a narrative review on the relevance of 3C BIS in the nutritional assessment in this population. At a population level, LTI decreases after the start of hemodialysis, whereas FTI increases. LTI below the 10th percentile is a consistent predictor of outcome whereas a low FTI is predominantly associated with outcome when combined with a low LTI. Recent research also showed the connection between low LTI, inflammation, and FO, which are cumulatively associated with an increased mortality risk. However, studies toward nutritional interventions based on BIS data are still lacking in this population. In conclusion, 3C BIS, by disentangling the components of body mass index, has contributed to our understanding of the relevance of abnormalities in different body compartments in chronic kidney disease patients, and appears to be a valuable prognostic tool, at least at a population level. Studies assessing the effect of BIS guided nutritional intervention could further support its use in the daily clinical care for renal patients.     

Potential and limits of FTIR methods for reclaimed asphalt characterisation

In recent years, as a result of both environmental policy and industrial economic strategy, the amount of asphalt pavement that has been recycled has risen dramatically. As a result of this, several international research projects have shown the need for improvements in reclaimed asphalt (RA) characterisation to support these higher recycling rates. During the life of a pavement, as well as the structural damage induced by traffic, the intrinsic properties of asphaltic materials are affected through the oxidative ageing of the bituminous binder. The molecular changes associated with this oxidation can be monitored via variations in Fourier transform infrared (FTIR) spectra. Therefore, if the relationships between binder properties, such as penetration, softening point and complex shear modulus and the spectra parameters can be established, the characterisation of RA produced by the milling of old pavements can be greatly improved. However, the interpretation of oxidation parameters from these spectra is not straightforward, and many different techniques are used to calculate them in the asphalt community. This paper gives a brief overview of asphalt oxidation and the FTIR principle. It then presents the results from four different calculation methods for the oxidation parameters applied to a set of more than 100 spectra obtained during the RILEM TC-ATB-TG5 round robin test. From this study, it is obvious that the conclusions of the analysis performed on the same set of raw spectra can differ considerably according to the FTIR oxidation index calculation method adopted. Using the RILEM database, the potential links between a given ageing index and the physical properties are then evaluated. As a result of this study it can be concluded that ageing comparison through FTIR should be considered as relative and restricted for use in measurements at different ageing steps on the same type of initial mixture. For FTIR spectra to be comparable between different laboratories, harmonisation of the data acquisition procedures is needed. Also the different calculation methods of the oxidation indicators seem to reflect different physical properties. So a first step toward harmonisation would be to agree on the relevant physical properties actually needed for efficient RA characterisation. This could then lead to a common FTIR index calculation method, which would reflect the properties of interest. For this, additional research is needed to improve knowledge of the relationship between the chemical oxidative process of a binder and the evolution of its physical properties.     

Photon-assisted tunneling in a carbon nanotube quantum dot

We report on photon-assisted tunneling (PAT) experiments in a carbon nanotube quantum dot using microwave frequencies between 20 and 60 GHz. In addition to the basic PAT effect, revealed by the appearance of two extra resonances in the current through the dot, we use PAT for spectroscopy of excited states. The experimental data are in good agreement with simulations.     

Risk-maps informing land-use planning processes A survey on the Netherlands and the United Kingdom recent developments

The definition of safety distances as required by Art 12 of the Seveso II Directive on dangerous substances (96/82/EC) is necessary to minimize the consequences of potential major accidents. As they affect the land-use destinations of involved areas, safety distances can be considered as risk tolerability criteria with a territorial reflection. Recent studies explored the suitability of using Geographical Information System technologies to support their elaboration and visual rendering. In particular, the elaboration of GIS "risk-maps" has been recognized as functional to two objectives: connecting spatial planners and safety experts during decision making processes and communicating risk to non-experts audiences. In order to elaborate on these findings and to verify their reflection on European practices, the article presents the result of a comparative study between the United Kingdom and the Netherlands recent developments. Their land-use planning practices for areas falling under Seveso II requirements are explored. The role of GIS risk-maps within decisional processes is analyzed and the reflection on the transparency and accessibility of risk-information is commented. Recommendations for further developments are given.     

Non-destructive Investigation of Paintings on Canvas by Continuous Wave Terahertz Imaging and Flash Thermography

Terahertz (THz) imaging is increasingly used in the cultural heritage field. In particular, continuous wave (CW) and low frequency THz is attracting more attention. The first application of the THz technique inherent to the cultural heritage field dates back 10 years ago. Since 2006, tangible improvements have been conducted in the refinement of the technique, with the aim to produce clear maps useful for any art restorer. In this paper, a CW THz (0.1 THz) imaging system was used to inspect paintings on canvas both in reflection and in transmission modes. In particular, two paintings were analyzed: in the first one, similar materials and painting execution of the original artwork were used, while in the second one, the canvas layer is slightly different. Flash thermography was used herein together with the THz method in order to observe the differences in results for the textile support materials. A possible application of this method for the detection of artwork forgery requires some parameterization and analysis of various materials or thickness influence which will be addressed in a future study. In this work, advanced image processing techniques including principal component thermography (PCT) and partial least squares thermography (PLST) were used to process the infrared data. Finally, a comparison of CW THz and thermographic results was conducted.     

An order batching algorithm for wave picking in a parallel-aisle warehouse

In this paper we address the problem of batching orders in a parallel-aisle warehouse, with the objective to minimize the maximum lead time of any of the batches. This is a typical objective for a wave picking operation. Many heuristics have been suggested to solve order batching problems. We present a branch-and-bound algorithm to solve this problem exactly. An initial upper bound for the branch-and-bound algorithm is obtained using a 2-opt heuristic. We present a basic version of the algorithm and show that major improvements are obtained by a simple but very powerful preprocessing step and an improved lower bound. The improvements for the algorithm are developed and tested using a relatively small test set. Next, the improved algorithm is tested on an extensive test set. It appears that problems of moderate size can be solved to optimality in practical time, especially when the number of batches is of importance. The 2-opt heuristic appears to be very powerful, providing tight upper bounds. Therefore, a truncated branch-and-bound algorithm would suffice in practice.     

Simulation study of an automated storage/retrieval system

In this paper we present a simulation study of an automated storage/retrieval system and examine a wide variety of control policies. We compare several storage location assignment policies. For the class-based storage policy, we apply a recent algorithm that enables us to evaluate the trade-off between storage space requirements and travel times. We also study a new storage location policy which combines low storage space requirements with short mean travel times. Furthermore, we study the sequencing of storage and retrieval requests whereby we focus on the trade-off between efficient travel of the S/R machines and response time performance.     

Real-time control of the 3-DOF sled dynamics of a -flux Maglev system with a passive sled

The real-time control of the three degrees of freedom (DOF) dynamics of an electrodynamic (EDS) Maglev vehicle is presented. The design is based on a 5-DOF state-space model of the sled dynamics that uses a simple algebraic model to describe the interaction between the -flux coils on the track and the permanent magnets on the sled. A first-order sliding mode controller with integral error term is used to control heave, pitch, and roll in real time from position-attitude information measured with sensors located on the sled. Experimental results show that control of the 3-DOF dynamics of the levitated vehicle in real time can be successfully achieved by the proposed method.     

The human RAD54 recombinational DNA repair protein is a double-stranded DNA-dependent ATPase

DNA double-strand break repair through the RAD52 homologous recombination pathway in the yeast Saccharomyces cerevisiae requires, among others, the RAD51, RAD52, and RAD54 genes. The biological importance of homologous recombination is underscored by the conservation of the RAD52 pathway from fungi to humans. The critical roles of the RAD52 group proteins in the early steps of recombination, the search for DNA homology and strand exchange, are now becoming apparent. Here, we report the purification of the human Rad54 protein. We showed that human Rad54 has ATPase activity that is absolutely dependent on double-stranded DNA. Unexpectedly, the ATPase activity appeared not absolutely required for the DNA repair function of human Rad54 in vivo. Despite the presence of amino acid sequence motifs that are conserved in a large family of DNA helicases, no helicase activity of human Rad54 was observed on a variety of different DNA substrates. Possible functions of human Rad54 in homologous recombination that couple the energy gained from ATP hydrolysis to translocation along DNA, rather than disruption of base pairing, are discussed.