An investigation of the pH-activity relationships of Cex, a family 10 xylanase from Cellulomonas fimi: xylan inhibition and the influence of nitro-substituted aryl-beta-D-xylobiosides on xylanase activity

The kinetic parameters of Cex, a family 10 xylanase from Cellulomonas fimi, were determined at various pH levels using soluble birchwood xylan (BWX) as a natural polymeric substrate along with three other synthetic aryl-beta-D-xylobioside substrates. Using BWX, a high level of substrate inhibition was observed which increased with decreasing pH. In contrast, typical Michaelis-Menten-type profiles were obtained using the three aryl-beta-D-xylobiosides as substrates. The k(cat) values determined using o-nitrophenyl-beta-D-xylobioside did not change as the pH increased, whereas the k(cat) values obtained with BWX, phenyl-beta-D-xylobioside and p-nitrophenyl-beta-D-xylobioside decreased, suggesting that the presence of an ortho nitro group affects the activity displayed by Cex. These differences were not observed with XynB from Clostridium stercorarium F9, a member of the same family of xylanases as Cex. These results indicate that a careful evaluation is required when employing substituted aryl-beta-D-xylobiosides in the characterization of xylanases.     

Mathematics based on incremental learning—Excluded middle and inductive inference

Learning theoretic aspects of mathematics and logic have been studied by many authors. They study how mathematical and logical objects are algorithmically “learned” (inferred) from finite data. Although they study mathematical objects, the objective of the studies is learning. In this paper, a mathematics whose foundation itself is learning theoretic will be introduced. It is called Limit-Computable Mathematics. It was originally introduced as a means for “Proof Animation”, which is expected to make interactive formal proof development easier. Although the original objective was not learning theoretic at all, learning theory is indispensable for our research. It suggests that logic and learning theory are related in a still unknown but deep new way.     

Updated data dissemination methods for updating old replicas in ad hoc networks

In this paper, we propose two updated data dissemination methods to not only reduce the number of accesses to old replicas, but also to improve the data accessibility in ad hoc networks where data items are updated regularly. In the first method, when a mobile host updates a data item, it disseminates the updated data item after the flooding of with invalidation reports. In the second method, two newly connected mobile hosts disseminate updated data items with each other after the flooding with invalidation reports.     

ELECTRON GUN FOR LARGE ORBIT GYROTRON (LOG) WITH DECREASED INFLUENCE OF CATHODE PLASMA ON ELECTRON BEAM PROPERTIES

High power Large Orbit Gyrotron (LOG) [1] is now under development at FIR FU. First version of this device was recently manufactured and then assembled with power supply ETIGO-IV [2]. Results of preliminary tests of electron-optic system are presented. The conditions when stable flat form of current pulse realized are discussed. Analytical estimations of cathode-anode distance to achieve small influence of cathode plasma during high voltage (HV) pulse are performed. Two new electron gun versions with decreased influence of the cathode plasma on its impedance and pulse form are suggested and optimized. New optimal magnetic field distributions are found. First gun has quiasi-flat cathode configuration near the anode diaphragm and provides operating current about 60 A. Second one uses blade cathode with operating current about 30 A. Beam quality for both guns is suitable for LOG operation.     

New Paradigms in Wireless Communication Systems

This paper discusses what a new paradigm can be in wireless communication systems of the twenty-first century. First, it suggests two directions for the new paradigm; one is “micro- and nano-device communication system” which is the projected scenario considering that the entities in source and destination have been shrinking throughout the history of wireless communication systems. The second direction is “networked robot system”, which emerges as a natural extension of mobile ad hoc networking where the networking is closely related to motion control of robots. Secondly, it shows two interesting research topics, “the new communication protocol design” and “signal processing”, respectively, that arise in the wake of the fusion between the two directions in the novel communication paradigm. Finally, it considers a new science of wireless communications in the twenty-first century. Shinsuke Hara received the B.Eng., M.Eng. and Ph.D. degrees in communications engineering from Osaka University, Osaka, Japan, in 1985, 1987 and 1990, respectively. From April 1990 to March 1997, he was an assistant professor in the Department of Communication Engineering, School of Engineering, Osaka University, and from October 1997 to September 2005, he was an associate professor in the Department of Electronic, Information and Energy Engineering, Graduate School of Engineering, Osaka University. Since October 2005, he has been a professor in the Department of Physical Electronics and Informatics, Graduate School of Engineering, Osaka City University. In addition, from April 1995 to March 1996, he was a visiting scientist at Telecommunications and Traffic Control Systems Group, Delft University of Technology, Delft, The Netherlands. His research interests include wireless communications systems and digital signal processing. Hiroyuki Yomo received B.S. degree in communication engineering from Department of Communication Engineering, Osaka University, Osaka, Japan, in 1997, and M.S. and Ph.D. degrees in communication engineering from Department of Electronic, Information, and Energy Engineering, Graduate School of Engineering, Osaka University, Osaka Japan, in 1999 and 2002, respectively. From April 2002 to March 2004, he was a Post-doctoral Fellow in Department of Communication Technology, Aalborg University, Denmark. From April 2004 to September 2004, he was at Internet System Laboratory, NEC Corporation, Japan. Since October 2004, he has been an Assistant Research Professor in Center for TeleInfrastructure (CTIF), Aalborg University, Denmark. His main research interests are access technologies, radio resource management, and link-layer techniques in the area of short-range communication, cellular network, cognitive radio, and sensor network. Petar Popovski received the Dipl.-Ing. in electrical engineering and M.Sc. in communication engineering from the Faculty of Electrical Engineering, Sts. Cyril and Methodius University, Skopje, Republic of Macedonia, in 1997 and 2000, respectively. He received a Ph.D. degree from Aalborg University, Denmark, in 2004. From 1998 to 2001 he was a teaching and research assistant at the Institute of Telecommunications, Faculty of Electrical Engineering in Skopje. He is currently Assistant Professor at the Department of Communication Technology at the Aalborg University. His research interests are related to the PHY-MAC aspects of wireless protocols, wireless sensor networks, random access protocols, and network coding. Kazunori Hayashi received the B.E., M.E. and Ph.D. degrees in communication engineering from Osaka University, Osaka, Japan, in 1997, 1999 and 2002, respectively. He spent 3 months in 2000 at Aalborg University, Denmark, as a Visiting Scholar. Since 2002, he has been with the Department of Systems Science, Graduate School of Informatics, Kyoto University. He is currently an Assistant Professor there. His research interests include digital signal processing for communications systems.     

Development of mushrooms for thrombosis prevention by protoplast fusion

With thrombosis a major cause of death in Japan and the Western world, thrombin-inhibitory agents that constrain the formation of fibrin are sought. We screened for basidiomycetes showing anti-thrombin activity and isolated Laetiporus sulphureus. However, it was difficult to cultivate and its form was not satisfactory. We therefore used protoplast fusion between L. sulphureus and the commonly cultivated basidiomycete Hypsizygus marmoreaus to obtain cultivable basidiomycetes that produced an anti-thrombin substance. For the protoplast fusion of L. sulphureus and H. marmoreaus, the protoplast concentration, alternating electric field intensity, dielectrophoresis duration, and field pulse intensity used were of 1 x 10(7) protoplasts/ml, 100 V/cm.1 MHz, 60 s, and 8 kV/cm, respectively. The number of regenerated colonies obtained was 4961, from which 43 strains were selected for electrophoretic analysis. Four of the fusants were found to have a band from each parent in isozyme patterns obtained using their crude extract. The fruiting bodies of the fusants were very similar to those of H. marmoreaus. Crude extract from each of the fusants and from L. sulphureus showed anti-coagulative activity in terms of the thrombin clotting time. We thus obtained improved basidiomycetes that produce an anti-thrombin substance, are easily cultivated, and whose form resembles H. marmoreaus, a commonly used culinary mushroom.     

Efficient transformation of Mesorhizobium huakuii subsp. rengei and Rhizobium species

The transformation of Mesorhizobium huakuii subsp. rengei B3 with either pBBR122 or pKT230 was carried out. We determined the optimal conditions required for transformation by electroporation and obtained up to 10(5) CFU/microg pBBR122. Plasmids prepared from strain B3 yielded higher transformation efficiency than those from various dam or dcm mutant strains of Escherichia coli. This result suggests that a high transformation efficiency is not related to the methylation of plasmid DNA in E. coli. Using the optimal conditions for electroporation, we performed transformation of several species of Rhizobium, Mesorhizobium and Sinorhizobium. All tested strains of these species were transformed with pBBR122. Strains of M. huakuii and R. phaseoli AHU1133 were transformed at high efficiency, whereas transformation efficiencies of Rhizobium sp. NGR234 and S. meliloti strains were less than 2 x 10(3) CFU/microg plasmid DNA.     

Purification and some properties of a chitinase from Xanthomonas sp. strain AK

Chitinase B (ChiB) was purified from the culture supernatant of Xanthomonas sp. strain AK by Phenyl-Toyopearl 650M and DEAE-Toyopearl 650M column chromatographies. The purified enzyme preparation gave a single band on SDS-polyacrylamide gel electrophoresis and the molecular weight of ChiB was estimated to be 48,000. The enzyme was optimally active at pH 6.0 and 60 degrees C. N-Terminal amino acid sequence analysis suggested that ChiB is a member of glycosyl hydrolase family 18 and that it is genetically different from ChiA recently reported (Sakka et al., J. Ferment. Bioeng., 86, 527-533, 1998). Immunological analysis suggested that ChiB was the major chitinase species in the culture supernatant of Xanthomonas sp. strain AK and that production of the enzyme was induced by the presence of chitin.     

Inhibition by drebrin of the actin-bundling activity of brain fascin, a protein localized in filopodia of growth cones

The purification of drebrin, an actin-binding protein that is specifically expressed in embryonic rat brain, was described previously. During the purification of drebrin, we found that an actin-binding protein of 54 kDa was also expressed at high levels in embryonic brain, and this protein was identified by immunoblotting as fascin. To explore the roles of fascin in brain development, we purified fascin from brains of infant rats and characterized it. We found that the actin-binding activity of fascin was strongly inhibited by drebrin. Fascin caused formation of actin bundles, a process that was inhibited in the presence of drebrin, as confirmed by electron microscopy and a low-speed centrifugation assay. In PC12 cells, fascin was localized in the filopodia of growth cones, whereas drebrin was localized in the basal region of growth cones. Our results suggest that fascin might play an important role in the organization of actin in filopodia and that this organization might be regulated by drebrin.