'Size leap' algorithm: an efficient extraction of the longest common motifs from a molecular sequence set. Application to the DNA sequence reconstruction.

We propose a new method, called 'size leap' algorithm, of search for motifs of maximum size and common to two fragments at least. It allows the creation of a reduced database of motifs from a set of sequences whose size obeys the series of Fibonacci numbers. The convenience lies in the efficiency of the motif extraction. It can be applied in the establishment of overlap regions for DNA sequence reconstruction and multiple alignment of biological sequences. The method of complete DNA sequence reconstruction by extraction of the longest motifs ('anchor motifs') is presented as an application of the size leap algorithm. The details of a reconstruction from three sequenced fragments are given as an example.     

Catalysis of linoleate oxidation by soluble chicken muscle proteins

A soluble fraction of a chickenMusculus gastrocnemius muscle was used to characterize the catalyst of linoleate oxidation. Separation of the chicken muscle extract into low (free metal) and high (protein) molecular weight fractions revealed that the molecular weight of the major catalyst of linoleate oxidation in chicken muscle extract was greater than 700 daltons. Catalysis of linoleate oxidation by the protein fraction exhibited a pH optimum of 5.9. Subjecting the protein fraction to heat treatments at increasing temperatures (30–90 C) decreased the catalysis of linoleate oxidation. Addition of two mM EDTA had no effect on the catalysis of linoleate oxidation. Cyanide (2 mM), glutathione (1 mM) and cysteine (1 mM) decreased the oxidation of linoleate by the protein fraction 21.0%, 22.9% and 29.0% respectively. Characterization of the oxidative catalyst in chicken muscle extract indicated that free metals and hemoproteins contribute to overall catalysis of linoleate oxidation but are not the sole catalysts. Heat inactivation of the oxidative catalyst and the observed pH optimum suggests that the unidentified catalyst is proteinacious and may be an enzyme.     

Effect of spinneret hole diameter on the spinning and properties of acetate fibre

Conclusions The effect of the number and diameter of spinneret holes on hole clogging and the properties of acetate yarns has been investigated under manufacturing conditions.On reducing spinneret hole diameter and increasing the number of holes, the strength and fatigue properties are raised, but the elongation of acetate yarn is reduced.Translated from Khimicheskie Volokna, No. 1, pp. 29–30, January–February, 1986.     

Überlegungen zur Erweiterung des Klebstoffangebots im Holzleimbau

The procedure of testing adhesives for glulam production depends in Europe on the kind of resin. For example the testing of phenol-formaldehyde resins (PF-resins) includes the boiling test method, because the curing rate of these resins show a significant correlation between the strength after boiling and the resistance to moisture influence. On the other hand this test method is commonly insufficient for testing other resins. The results of investigations of glulam based on different kinds of resins show that there is a possibility to substitute the boiling test by a short-time accelerated aging method (KZB-Test) which will offer the same differentiation.     

Spannungsintensitätsfaktoren für vollständig umlaufende Oberflächenumfangsrisse in Rohren bei Thermoschockbelastung

Stress Intensity Factors for Complete Circumferential Surface Cracks in Thermally Shocked Pipes In the case of an emergency cooling of a reactor thermal stresses are generated in the pipes of the primary loop, which may be described conservatively as a thermal shock problem. In this paper complete interior circumferential surface cracks loaded by these thermal stresses are considered. By means of the weight function method stress intensity factors were calculated for this loading case.     

The nature and role of incoherent interphase interfaces in diffusional solid-solid phase transformations

In this article, some views on the nature of incoherent interphase interfaces, and their role in the nucleation and growth processes governing the evolution of microstructure in solid-state diffusional transformations (reconstructive transformations), are explored. It is argued that essentially incoherent interfaces can be involved in the initiation and propagation of polymorphic transformations and massive transformations as well as in various precipitation phenomena in metallic and ceramic systems. Similar views have already been advanced earlier in connection with studies of massive transformations. Faceting along the interphase interface during nucleation and growth can derive from thermodynamic, kinetic, and crystallographic factors independent of the bicrystallography of the conjugate phases. This idiomorphic behavior can be relevant to both intergranular and intragranular phase formation. The concept of one-dimensional (1-D) commensuration of phases through plane edge-to-edge/row matching is an interesting extension of the classic ideas of coherency and bicrystallography and potentially important in characterizing the behavior of certain types of boundaries. However, the general importance of these geometrical relations in real and reciprocal space will depend on the depth of the energy wells in orientation space associated with these special boundaries. This article is based on a presentation made in the “Hume-Rothery Symposium on Structure and Diffusional Growth Mechanisms of Irrational Interphase Boundaries,” which occurred during the TMS Winter meeting, March 15–17, 2004, in Charlotte, NC, under the auspices of the TMS Alloy Phases Committee and the co-sponsorship of the TMS-ASM Phase Transformations Committee.     

Evaluation of hydrological processes in a mountainous small basin using a quinone biomarker.

An applicability of quinone biomarker to the analysis of hillslope runoff was investigated. At first, quinone profiles of three streams as well as a hillslope runoff in a forested headwater catchment were compared. The quinone composition of hillslope runoff differed from others. Moreover, there were remarkable differences in quinone profile of hillslope runoff under different rainfall conditions. Then, the behavior of quinone biomarker during the increase and decrease of hillslope runoff after a rainfall event was examined. The fractional changes in Q-9 (H2), Q-10 (H2), Q-11, MK-6 and MK-10 suggested the effect of interflow.