Combining Data Longevity with High Storage Capacity—Layer‐by‐Layer DNA Encapsulated in Magnetic Nanoparticles

In this paper the practical density of long‐term DNA storage is increased. Specifically, the DNA weight loading of silica sphere DNA storage is increased to 3.4 wt%, a ten‐fold increase compared to the previous state‐of‐the‐art. By applying a Layer‐by‐Layer (LbL) design with alternating layers of DNA and a polycationic molecule, namely polyethyleneimine (PEI), another dimension to DNA surface binding onto magnetic nanoparticles is added. A protective silica layer is grown on top of the multilayered nanoparticles to shield the DNA from external sources of damage. Accelerated aging experiments of the nanoparticles and the subsequent quantification of DNA stability via qPCR show a significantly lower degradation rate compared to unprotected DNA. The novel material is compared to previous DNA storage technologies, outperforming those in DNA storage density as well as stability. Finally, the storage of an 83 kB digital file in DNA through a successful readout of a 4991 oligonucleotide pool is demonstrated from particle encapsulation, through accelerated aging, to sequencing.     

Marginal Abatement Cost Curves for Water Scarcity Mitigation under Uncertainty

Water Resources Management - As water scarcity and drought become more common, planning to avoid their consequences becomes crucial. Measures to prevent the impact of new climate conditions are...     

Regional Sentiment Bias in Social Media Reporting During Crises

Crisis events such as terrorist attacks are extensively commented upon on social media platforms such as Twitter. For this reason, social media content posted during emergency events is increasingly being used by news media and in social studies to characterize the public’s reaction to those events. This is typically achieved by having journalists select ‘representative’ tweets to show, or a classifier trained on prior human-annotated tweets is used to provide a sentiment/emotion breakdown for the event. However, social media users, journalists and annotators do not exist in isolation, they each have their own context and world view. In this paper, we ask the question, ‘to what extent do local and international biases affect the sentiments expressed on social media and the way that social media content is interpreted by annotators’. In particular, we perform a multi-lingual study spanning two events and three languages. We show that there are marked disparities between the emotions expressed by users in different languages for an event. For instance, during the 2016 Paris attack, there was 16% more negative comments written in the English than written in French, even though the event originated on French soil. Furthermore, we observed that sentiment biases also affect annotators from those regions, which can negatively impact the accuracy of social media labelling efforts. This highlights the need to consider the sentiment biases of users in different countries, both when analysing events through the lens of social media, but also when using social media as a data source, and for training automatic classification models.     

Towards analysing the rationale of information security non-compliance: Devising a Value-Based Compliance analysis method

Employees’ poor compliance with information security policies is a perennial problem. Current information security analysis methods do not allow information security managers to capture the rationalities behind employees’ compliance and non-compliance. To address this shortcoming, this design science research paper suggests: (a) a Value-Based Compliance analysis method and (b) a set of design principles for methods that analyse different rationalities for information security. Our empirical demonstration shows that the method supports a systematic analysis of why employees comply/do not comply with policies. Thus we provide managers with a tool to make them more knowledgeable about employees’ information security behaviours.     

Maternal inhalation of carbon black nanoparticles induces neurodevelopmental changes in mouse offspring

Background

Engineered nanoparticles are smaller than 100 nm and designed to improve or creating even new physico-chemical properties. Consequently, toxicological properties of materials may change as size reaches the nm size-range. We examined outcomes related to the central nervous system in the offspring following maternal inhalation exposure to nanosized carbon black particles (Printex 90).

Methods

Time-mated mice (NMRI) were exposed by inhalation, for 45 min/day to 0, 4.6 or 37 mg/m³ aerosolized carbon black on gestation days 4–18, i.e. for a total of 15 days. Outcomes included maternal lung inflammation (differential cell count in bronchoalveolar lavage fluid and Saa3 mRNA expression in lung tissue), offspring neurohistopathology and behaviour in the open field test.

Results

Carbon black exposure did not cause lung inflammation in the exposed females, measured 11 or 28–29 days post-exposure. Glial fibrillary acidic protein (GFAP) expression levels were dose-dependently increased in astrocytes around blood vessels in the cerebral cortex and hippocampus in six weeks old offspring, indicative of reactive astrogliosis. Also enlarged lysosomal granules were observed in brain perivascular macrophages (PVMs) in the prenatally exposed offspring. The number of parvalbumin-positive interneurons and the expression levels of parvalbumin were decreased in the motor and prefrontal cortices at weaning and 120 days of age in the prenatally exposed offspring. In the open field test, behaviour was dose-dependently altered following maternal exposure to Printex 90, at 90 days of age. Prenatally exposed female offspring moved a longer total distance, and especially males spent significantly longer time in the central zone of the maze. In the offspring, the described effects were long-lasting as they were present at all time points investigated.

Conclusion

The present study reports for the first time that maternal inhalation exposure to Printex 90 carbon black induced dose-dependent denaturation of PVM and reactive astrocytes, similarly to the findings observed following maternal exposure to Printex 90 by airway instillation. Of note, some of the observed effects have striking similarities with those observed in mouse models of neurodevelopmental disorders.

     

The Phospholipid Composition of Kangaroo Spermatozoa Verified by Mass Spectrometric Lipid Analysis

Cryopreservation of kangaroo sperm has not been successful so far, and yet there is no promising cryopreservation protocol for these cells available. However, conservation of gametes is extremely important, particularly in the context of preserving endangered species. As spermatozoa are comprised of different membrane systems, the composition of these membranes might account for difficulties in cryopreservation. Lipids, as the main components, affect the physical properties of biological membranes and play a major role in sperm maturation. Therefore, knowledge of the lipid composition is crucial for any further step toward the preservation of the species. We used MALDI‐TOF, ESI‐IT, tandem mass spectrometry, and thin layer chromatography to investigate the lipid composition of epididymal spermatozoa of four different kangaroo species. Spectra of these species were very similar with respect to the identified lipid species. Tremendous changes in the lipid composition during the transit of sperm from caput to cauda epididymis could be seen, specifically an increase in poly‐unsaturated fatty acids, ether lipids, and plasmalogens, as well as a reduction in mono‐ and di‐unsaturated fatty acids. Additionally, phosphatidylcholines containing docosatrienoic acid (22:3), a heretofore unknown fatty acid for sperm membranes, showed the highest abundance in kangaroo sperm.     

Cadmium bioaccumulation factors for terrestrial species: application of the mechanistic bioaccumulation model OMEGA to explain field data

In environmental risk assessment of metals it is often assumed that the biota-to-soil accumulation factor (BSAF) is generic and constant. However, previous studies have shown that cadmium bioaccumulation factors of earthworms and small mammals are inversely related to total soil concentrations. Here, we provide an overview of cadmium accumulation in terrestrial species belonging to different trophic levels, including plants, snails and moles. Internal metal concentrations of these species are less than linearly related to total soil levels, which is in accordance with previously observed trends. The mechanistic bioaccumulation model OMEGA (Optimal Modeling for Ecotoxicological Applications) is used to provide a quantitative explanation of these trends in cadmium accumulation. Our results indicate that the model accurately predicts cadmium accumulation in earthworms, voles and shrews when accounting for geochemical availability of metals and saturable uptake kinetics.     

Extracting dust from soil: a simple solution to a tricky task

Air quality is commonly assessed by the ambient concentration of airborne particles sized smaller than 10 microm (PM10). However, in addition to concentration, particle shape as well as the type and bioaccessibility of elements adsorbed to this particulate fraction are likely to be related to subsequent respiratory health effects. In order to investigate this relationship, a relatively large mass of the relevant size fraction is needed since sample preparation is necessary prior to analysis. Most existing methods for sampling dust have been developed for analysing the dust directly, without prior handling or digestion. In order to provide sufficient material to be used for subsequent bioaccessibility analysis, these methods require repetitive and time consuming sampling as well as special equipment and procedures which are high in both cost and maintenance. This paper describes an inexpensive and relatively simple procedure for extracting the PM10 fraction from soil to be used for lung bioaccessibility studies. The method described involves dry and wet sieving in order to exclude larger size fractions as far as possible. Vacuum filtering of the wet-sieved soil solution through a 10 microm mesh was then employed to extract the required fraction. In order to avoid frequent blocking of the mesh, Stokes's law was applied in the construction of a tube which enables separation of the solution holding the smallest fraction.